RNA–Protein interactions for RNA: ENST00000532331.5

PTPRK-221, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRK, Length 5,757 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-221ENST00000532331 ABCA8O94911 1581 aa13.22□□□□□ -0.29
PTPRK-221ENST00000532331 ZNF335Q9H4Z2 1342 aaPredicted RBP13.22□□□□□ -0.29
PTPRK-221ENST00000532331 DACH1Q9UI36 760 aa13.22□□□□□ -0.29
PTPRK-221ENST00000532331 SLC4A8Q2Y0W8 1093 aa13.22□□□□□ -0.29
PTPRK-221ENST00000532331 CATIPQ7Z7H3 387 aa13.22□□□□□ -0.29
PTPRK-221ENST00000532331 EVI5LQ96CN4 794 aa13.22□□□□□ -0.29
PTPRK-221ENST00000532331 KDM5DQ9BY66 1539 aa13.21□□□□□ -0.29
PTPRK-221ENST00000532331 EIF6P56537 245 aaKnown RBP13.21□□□□□ -0.29
PTPRK-221ENST00000532331 SLC12A7Q9Y666 1083 aa13.21□□□□□ -0.29
PTPRK-221ENST00000532331 TRIM27P14373 513 aa13.21□□□□□ -0.29
PTPRK-221ENST00000532331 STIM1Q13586 685 aa13.21□□□□□ -0.29
PTPRK-221ENST00000532331 IFIT3O14879 490 aaKnown RBP13.21□□□□□ -0.29
PTPRK-221ENST00000532331 CASTP20810 708 aaKnown RBP13.21□□□□□ -0.29
PTPRK-221ENST00000532331 CYP7A1P22680 504 aa13.21□□□□□ -0.29
PTPRK-221ENST00000532331 IL15P40933 162 aaPredicted RBP13.21□□□□□ -0.29
PTPRK-221ENST00000532331 PICALMQ13492 652 aa13.21□□□□□ -0.29
PTPRK-221ENST00000532331 CCP110O43303 1012 aa13.21□□□□□ -0.3
PTPRK-221ENST00000532331 TNNI2P48788 182 aa13.21□□□□□ -0.3
PTPRK-221ENST00000532331 PPP4R3BQ5MIZ7 849 aa13.21□□□□□ -0.3
PTPRK-221ENST00000532331 PRPF40BQ6NWY9 871 aaKnown RBP13.21□□□□□ -0.3
PTPRK-221ENST00000532331 CAGE1Q8TC20 777 aa13.21□□□□□ -0.3
PTPRK-221ENST00000532331 CCDC192P0DO97 292 aa13.2□□□□□ -0.3
PTPRK-221ENST00000532331 ZNF790Q6PG37 636 aa13.2□□□□□ -0.3
PTPRK-221ENST00000532331 PLEKHG3A1L390 1219 aa13.2□□□□□ -0.3
PTPRK-221ENST00000532331 HMGB1P09429 215 aaKnown RBP13.2□□□□□ -0.3
PTPRK-221ENST00000532331 PDIA4P13667 645 aaKnown RBP13.2□□□□□ -0.3
PTPRK-221ENST00000532331 BRPF1P55201 1214 aaPredicted RBP13.2□□□□□ -0.3
PTPRK-221ENST00000532331 NAA16Q6N069 864 aaPredicted RBP13.2□□□□□ -0.3
PTPRK-221ENST00000532331 TNMDQ9H2S6 317 aa13.2□□□□□ -0.3
PTPRK-221ENST00000532331 LINS1Q8NG48 757 aa13.2□□□□□ -0.3
PTPRK-221ENST00000532331 PDCL3Q9H2J4 239 aa13.2□□□□□ -0.3
PTPRK-221ENST00000532331 KAT14Q9H8E8 782 aa13.2□□□□□ -0.3
PTPRK-221ENST00000532331 ZCCHC11Q5TAX3 1644 aaKnown RBP13.2□□□□□ -0.3
PTPRK-221ENST00000532331 TMEM87AQ8NBN3 555 aa13.19□□□□□ -0.3
PTPRK-221ENST00000532331 NLRP1Q9C000 1473 aa13.19□□□□□ -0.3
PTPRK-221ENST00000532331 RDXP35241 583 aaKnown RBP13.19□□□□□ -0.3
PTPRK-221ENST00000532331 CFAP45Q9UL16 551 aa13.19□□□□□ -0.3
PTPRK-221ENST00000532331 DHX8Q14562 1220 aaKnown RBP13.19□□□□□ -0.3
PTPRK-221ENST00000532331 MLH3Q9UHC1 1453 aa13.19□□□□□ -0.3
PTPRK-221ENST00000532331 KIF5BP33176 963 aa13.19□□□□□ -0.3
PTPRK-221ENST00000532331 TTLL5Q6EMB2 1281 aa13.18□□□□□ -0.3
PTPRK-221ENST00000532331 FAM196AQ6ZSG2 479 aa13.18□□□□□ -0.3
PTPRK-221ENST00000532331 SUPT20HQ8NEM7 779 aa13.18□□□□□ -0.3
PTPRK-221ENST00000532331 CEP131Q9UPN4 1083 aa13.18□□□□□ -0.3
PTPRK-221ENST00000532331 TRIM21P19474 475 aaKnown RBP13.18□□□□□ -0.3
PTPRK-221ENST00000532331 MFSD6Q6ZSS7 791 aa13.18□□□□□ -0.3
PTPRK-221ENST00000532331 ZNHIT6Q9NWK9 470 aaKnown RBP13.18□□□□□ -0.3
PTPRK-221ENST00000532331 SERPINC1P01008 464 aa13.18□□□□□ -0.3
PTPRK-221ENST00000532331 PLCG2P16885 1265 aa13.18□□□□□ -0.3
PTPRK-221ENST00000532331 BEGAINQ9BUH8 593 aa13.18□□□□□ -0.3
PTPRK-221ENST00000532331 SLC52A2Q9HAB3 445 aa13.18□□□□□ -0.3
PTPRK-221ENST00000532331 ARHGEF12Q9NZN5 1544 aa13.18□□□□□ -0.3
PTPRK-221ENST00000532331 HSP90B2PQ58FF3 399 aa13.18□□□□□ -0.3
PTPRK-221ENST00000532331 LARGE2Q8N3Y3 721 aa13.18□□□□□ -0.3
PTPRK-221ENST00000532331 ZNF771Q7L3S4 317 aaPredicted RBP13.18□□□□□ -0.3
PTPRK-221ENST00000532331 SPATA32Q96LK8 384 aa13.18□□□□□ -0.3
PTPRK-221ENST00000532331 CIZ1Q9ULV3 898 aaPredicted RBP13.18□□□□□ -0.3
PTPRK-221ENST00000532331 UFL1O94874 794 aa13.17□□□□□ -0.3
PTPRK-221ENST00000532331 C8orf58Q8NAV2 365 aa13.17□□□□□ -0.3
PTPRK-221ENST00000532331 POLR3AO14802 1390 aaPredicted RBP13.17□□□□□ -0.3
PTPRK-221ENST00000532331 CCDC12Q8WUD4 166 aaPredicted RBP13.17□□□□□ -0.3
PTPRK-221ENST00000532331 TESK2Q96S53 571 aa13.17□□□□□ -0.3
PTPRK-221ENST00000532331 MYO6Q9UM54 1294 aa13.17□□□□□ -0.3
PTPRK-221ENST00000532331 SH3TC1Q8TE82 1336 aa13.17□□□□□ -0.3
PTPRK-221ENST00000532331 TSPY3P0CV98 308 aa13.17□□□□□ -0.3
PTPRK-221ENST00000532331 TSPY8P0CW00 308 aa13.17□□□□□ -0.3
PTPRK-221ENST00000532331 PZPP20742 1482 aa13.17□□□□□ -0.3
PTPRK-221ENST00000532331 KRT27Q7Z3Y8 459 aa13.17□□□□□ -0.3
PTPRK-221ENST00000532331 ARHGAP45Q92619 1136 aa13.17□□□□□ -0.3
PTPRK-221ENST00000532331 ZNF408Q9H9D4 720 aa13.17□□□□□ -0.3
PTPRK-221ENST00000532331 VAT1LQ9HCJ6 419 aa13.17□□□□□ -0.3
PTPRK-221ENST00000532331 CFAP65Q6ZU64 1925 aaKnown RBP13.16□□□□□ -0.3
PTPRK-221ENST00000532331 ARHGEF5Q12774 1597 aa13.16□□□□□ -0.3
PTPRK-221ENST00000532331 GOLGA8AA7E2F4 631 aa13.16□□□□□ -0.3
PTPRK-221ENST00000532331 GOLGA8BA8MQT2 603 aa13.16□□□□□ -0.3
PTPRK-221ENST00000532331 ZFYP08048 801 aaPredicted RBP13.16□□□□□ -0.3
PTPRK-221ENST00000532331 CCDC82Q8N4S0 544 aa13.16□□□□□ -0.3
PTPRK-221ENST00000532331 CARD14Q9BXL6 1004 aa13.16□□□□□ -0.3
PTPRK-221ENST00000532331 DDX21Q9NR30 783 aaKnown RBP eCLIP13.16□□□□□ -0.3
PTPRK-221ENST00000532331 CCDC178Q5BJE1 867 aa13.16□□□□□ -0.3
PTPRK-221ENST00000532331 DDX11Q96FC9 970 aa13.16□□□□□ -0.3
PTPRK-221ENST00000532331 TRAF1Q13077 416 aa13.16□□□□□ -0.3
PTPRK-221ENST00000532331 DPP8Q6V1X1 898 aaPredicted RBP13.16□□□□□ -0.3
PTPRK-221ENST00000532331 HELBQ8NG08 1087 aaPredicted RBP13.16□□□□□ -0.3
PTPRK-221ENST00000532331 BCS1LQ9Y276 419 aa13.16□□□□□ -0.3
PTPRK-221ENST00000532331 HECW2Q9P2P5 1572 aa13.16□□□□□ -0.3
PTPRK-221ENST00000532331 PLEKHH1Q9ULM0 1364 aa13.16□□□□□ -0.3
PTPRK-221ENST00000532331 MSL1Q68DK7 614 aa13.16□□□□□ -0.3
PTPRK-221ENST00000532331 VTI1AQ96AJ9 217 aa13.16□□□□□ -0.3
PTPRK-221ENST00000532331 STX8Q9UNK0 236 aa13.16□□□□□ -0.3
PTPRK-221ENST00000532331 ERVV-2B6SEH9 535 aa13.15□□□□□ -0.3
PTPRK-221ENST00000532331 LDHBP07195 334 aaKnown RBP13.15□□□□□ -0.3
PTPRK-221ENST00000532331 PPFIBP1Q86W92 1011 aa13.15□□□□□ -0.3
PTPRK-221ENST00000532331 DNAI2Q9GZS0 605 aa13.15□□□□□ -0.3
PTPRK-221ENST00000532331 GGA1Q9UJY5 639 aa13.15□□□□□ -0.3
PTPRK-221ENST00000532331 SLC4A4Q9Y6R1 1079 aa13.15□□□□□ -0.3
PTPRK-221ENST00000532331 SPDYE4A6NLX3 237 aa13.15□□□□□ -0.3
PTPRK-221ENST00000532331 PLBD2Q8NHP8 589 aa13.15□□□□□ -0.3
PTPRK-221ENST00000532331 ERCC4Q92889 916 aaPredicted RBP13.15□□□□□ -0.3
PTPRK-221ENST00000532331 RAB34Q9BZG1 259 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms