RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 HIP1O00291 1037 aa23.29■■□□□ 1.32
PCF11-203ENST00000530304 DNM1Q05193 864 aaKnown RBP23.29■■□□□ 1.32
PCF11-203ENST00000530304 LMOD2Q6P5Q4 547 aa23.29■■□□□ 1.32
PCF11-203ENST00000530304 AXIN2Q9Y2T1 843 aa23.29■■□□□ 1.32
PCF11-203ENST00000530304 KCNJ4P48050 445 aa23.29■■□□□ 1.32
PCF11-203ENST00000530304 PDIA6Q15084 440 aa23.29■■□□□ 1.32
PCF11-203ENST00000530304 HCLS1P14317 486 aaPredicted RBP23.28■■□□□ 1.32
PCF11-203ENST00000530304 NECAB1Q8N987 351 aa23.28■■□□□ 1.32
PCF11-203ENST00000530304 TLR7Q9NYK1 1049 aaKnown RBP23.28■■□□□ 1.32
PCF11-203ENST00000530304 SIL1Q9H173 461 aa23.28■■□□□ 1.32
PCF11-203ENST00000530304 USP25Q9UHP3 1055 aa23.28■■□□□ 1.32
PCF11-203ENST00000530304 TPCN1Q9ULQ1 816 aa23.28■■□□□ 1.32
PCF11-203ENST00000530304 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP23.28■■□□□ 1.32
PCF11-203ENST00000530304 IGKV5-2P06315 115 aa23.27■■□□□ 1.32
PCF11-203ENST00000530304 BOLA2Q9H3K6 86 aa23.27■■□□□ 1.32
PCF11-203ENST00000530304 SLIT3O75094 1523 aa23.26■■□□□ 1.31
PCF11-203ENST00000530304 SIPA1L3O60292 1781 aaPredicted RBP23.26■■□□□ 1.31
PCF11-203ENST00000530304 SLC27A2O14975 620 aa23.26■■□□□ 1.31
PCF11-203ENST00000530304 RIC3Q7Z5B4 369 aa23.26■■□□□ 1.31
PCF11-203ENST00000530304 SNRKQ9NRH2 765 aa23.26■■□□□ 1.31
PCF11-203ENST00000530304 VPS37CA5D8V6 355 aaPredicted RBP23.26■■□□□ 1.31
PCF11-203ENST00000530304 A0A0D9SFI3 127 aa23.25■■□□□ 1.31
PCF11-203ENST00000530304 COL9A3Q14050 684 aaPredicted RBP23.25■■□□□ 1.31
PCF11-203ENST00000530304 PSMA5P28066 241 aa23.25■■□□□ 1.31
PCF11-203ENST00000530304 KLHDC4Q8TBB5 520 aa23.25■■□□□ 1.31
PCF11-203ENST00000530304 GIMAP6Q6P9H5 292 aa23.24■■□□□ 1.31
PCF11-203ENST00000530304 FSD1Q9BTV5 496 aa23.24■■□□□ 1.31
PCF11-203ENST00000530304 ADCY5O95622 1261 aa23.24■■□□□ 1.31
PCF11-203ENST00000530304 SLC39A6Q13433 755 aa23.24■■□□□ 1.31
PCF11-203ENST00000530304 FUCA2Q9BTY2 467 aa23.24■■□□□ 1.31
PCF11-203ENST00000530304 ZNF790Q6PG37 636 aa23.23■■□□□ 1.31
PCF11-203ENST00000530304 LARP1Q6PKG0 1096 aaKnown RBP23.23■■□□□ 1.31
PCF11-203ENST00000530304 MYL6BP14649 208 aa23.23■■□□□ 1.31
PCF11-203ENST00000530304 KIAA2012Q0VF49 1180 aa23.23■■□□□ 1.31
PCF11-203ENST00000530304 LARP1BQ659C4 914 aaKnown RBP23.23■■□□□ 1.31
PCF11-203ENST00000530304 MPNDQ8N594 471 aa23.23■■□□□ 1.31
PCF11-203ENST00000530304 CAMTA1Q9Y6Y1 1673 aa23.22■■□□□ 1.31
PCF11-203ENST00000530304 NEURL1BA8MQ27 555 aa23.22■■□□□ 1.31
PCF11-203ENST00000530304 NEXNQ0ZGT2 675 aa23.22■■□□□ 1.31
PCF11-203ENST00000530304 GLIPR1L2Q4G1C9 344 aa23.21■■□□□ 1.31
PCF11-203ENST00000530304 RNF20Q5VTR2 975 aa23.21■■□□□ 1.31
PCF11-203ENST00000530304 BLOC1S2Q6QNY1 142 aa23.21■■□□□ 1.31
PCF11-203ENST00000530304 UQCRHLA0A096LP55 91 aa23.21■■□□□ 1.31
PCF11-203ENST00000530304 UQCRHP07919 91 aa23.21■■□□□ 1.31
PCF11-203ENST00000530304 KLHL34Q8N239 644 aa23.21■■□□□ 1.31
PCF11-203ENST00000530304 TCEANC2Q96MN5 208 aa23.21■■□□□ 1.31
PCF11-203ENST00000530304 NPHP4O75161 1426 aaPredicted RBP23.21■■□□□ 1.31
PCF11-203ENST00000530304 ADAMTS7Q9UKP4 1686 aa23.2■■□□□ 1.31
PCF11-203ENST00000530304 KDM4AO75164 1064 aa23.2■■□□□ 1.3
PCF11-203ENST00000530304 GCKRQ14397 625 aa23.2■■□□□ 1.3
PCF11-203ENST00000530304 EPHA10Q5JZY3 1008 aa23.2■■□□□ 1.3
PCF11-203ENST00000530304 ZNF830Q96NB3 372 aaPredicted RBP23.2■■□□□ 1.3
PCF11-203ENST00000530304 PDCL3Q9H2J4 239 aa23.2■■□□□ 1.3
PCF11-203ENST00000530304 TAF6LQ9Y6J9 622 aa23.2■■□□□ 1.3
PCF11-203ENST00000530304 MED23Q9ULK4 1368 aa23.2■■□□□ 1.3
PCF11-203ENST00000530304 ANKRD1Q15327 319 aa23.19■■□□□ 1.3
PCF11-203ENST00000530304 ZNF589Q86UQ0 364 aaPredicted RBP23.19■■□□□ 1.3
PCF11-203ENST00000530304 XAGE3Q8WTP9 111 aa23.19■■□□□ 1.3
PCF11-203ENST00000530304 PDIA4P13667 645 aaKnown RBP23.19■■□□□ 1.3
PCF11-203ENST00000530304 RPS6KB1P23443 525 aa23.19■■□□□ 1.3
PCF11-203ENST00000530304 CDC37L1Q7L3B6 337 aa23.19■■□□□ 1.3
PCF11-203ENST00000530304 COPS6Q7L5N1 327 aa23.19■■□□□ 1.3
PCF11-203ENST00000530304 MYD88Q99836 296 aa23.19■■□□□ 1.3
PCF11-203ENST00000530304 SLC52A2Q9HAB3 445 aa23.19■■□□□ 1.3
PCF11-203ENST00000530304 ERBB3P21860 1342 aa23.19■■□□□ 1.3
PCF11-203ENST00000530304 RBM10P98175 930 aaKnown RBP23.18■■□□□ 1.3
PCF11-203ENST00000530304 LMTK3Q96Q04 1460 aa23.18■■□□□ 1.3
PCF11-203ENST00000530304 KRT28Q7Z3Y7 464 aa23.18■■□□□ 1.3
PCF11-203ENST00000530304 METTL22Q9BUU2 404 aaPredicted RBP23.18■■□□□ 1.3
PCF11-203ENST00000530304 RGPD5Q99666 1765 aa23.17■■□□□ 1.3
PCF11-203ENST00000530304 KRT85P78386 507 aa23.17■■□□□ 1.3
PCF11-203ENST00000530304 FERMT3Q86UX7 667 aa23.17■■□□□ 1.3
PCF11-203ENST00000530304 NFATC2IPQ8NCF5 419 aa23.17■■□□□ 1.3
PCF11-203ENST00000530304 EDC3Q96F86 508 aaKnown RBP23.17■■□□□ 1.3
PCF11-203ENST00000530304 ALDH8A1Q9H2A2 487 aaPredicted RBP23.17■■□□□ 1.3
PCF11-203ENST00000530304 PDCP20941 246 aa23.17■■□□□ 1.3
PCF11-203ENST00000530304 TOB2Q14106 344 aaPredicted RBP23.17■■□□□ 1.3
PCF11-203ENST00000530304 SASS6Q6UVJ0 657 aa23.17■■□□□ 1.3
PCF11-203ENST00000530304 TTC6Q86TZ1 520 aa23.17■■□□□ 1.3
PCF11-203ENST00000530304 C5P01031 1676 aa23.16■■□□□ 1.3
PCF11-203ENST00000530304 MRC1P22897 1456 aa23.16■■□□□ 1.3
PCF11-203ENST00000530304 ZC3H6P61129 1189 aaKnown RBP23.16■■□□□ 1.3
PCF11-203ENST00000530304 FAM173BQ6P4H8 233 aa23.16■■□□□ 1.3
PCF11-203ENST00000530304 RAPGEF4Q8WZA2 1011 aa23.16■■□□□ 1.3
PCF11-203ENST00000530304 TTC12Q9H892 705 aaPredicted RBP23.16■■□□□ 1.3
PCF11-203ENST00000530304 JCADQ9P266 1359 aa23.15■■□□□ 1.3
PCF11-203ENST00000530304 NPHP3Q7Z494 1330 aa23.15■■□□□ 1.3
PCF11-203ENST00000530304 TSGA10IPQ3SY00 556 aa23.15■■□□□ 1.3
PCF11-203ENST00000530304 HMG20BQ9P0W2 317 aa23.15■■□□□ 1.3
PCF11-203ENST00000530304 TAF5LO75529 589 aa23.15■■□□□ 1.3
PCF11-203ENST00000530304 PIBF1Q8WXW3 757 aa23.15■■□□□ 1.3
PCF11-203ENST00000530304 COPRSQ9NQ92 184 aa23.15■■□□□ 1.3
PCF11-203ENST00000530304 KDM6AO15550 1401 aaPredicted RBP23.15■■□□□ 1.3
PCF11-203ENST00000530304 PLCB2Q00722 1185 aa23.14■■□□□ 1.3
PCF11-203ENST00000530304 ANKRD13DQ6ZTN6 518 aa23.14■■□□□ 1.3
PCF11-203ENST00000530304 JARID2Q92833 1246 aaPredicted RBP23.14■■□□□ 1.3
PCF11-203ENST00000530304 ZNF496Q96IT1 587 aaPredicted RBP23.14■■□□□ 1.29
PCF11-203ENST00000530304 FAM13BQ9NYF5 915 aa23.14■■□□□ 1.29
PCF11-203ENST00000530304 ELP1O95163 1332 aa23.14■■□□□ 1.29
PCF11-203ENST00000530304 DBNLQ9UJU6 430 aaKnown RBP23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms