RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 GCC1Q96CN9 775 aa18.89■□□□□ 0.61
NKX3-1-202ENST00000523261 POLR3GLQ9BT43 218 aa18.89■□□□□ 0.61
NKX3-1-202ENST00000523261 NIP7Q9Y221 180 aaKnown RBP eCLIP18.89■□□□□ 0.61
NKX3-1-202ENST00000523261 FAM177BA6PVY3 158 aa18.88■□□□□ 0.61
NKX3-1-202ENST00000523261 HUNKP57058 714 aa18.88■□□□□ 0.61
NKX3-1-202ENST00000523261 TEFQ10587 303 aa18.88■□□□□ 0.61
NKX3-1-202ENST00000523261 NIM1KQ8IY84 436 aa18.88■□□□□ 0.61
NKX3-1-202ENST00000523261 FAM155AB1AL88 458 aaPredicted RBP18.87■□□□□ 0.61
NKX3-1-202ENST00000523261 GRIPAP1Q4V328 841 aa18.87■□□□□ 0.61
NKX3-1-202ENST00000523261 CTU1Q7Z7A3 348 aaKnown RBP18.87■□□□□ 0.61
NKX3-1-202ENST00000523261 SLC51AQ86UW1 340 aa18.87■□□□□ 0.61
NKX3-1-202ENST00000523261 IL17REQ8NFR9 667 aa18.87■□□□□ 0.61
NKX3-1-202ENST00000523261 ZC3H15Q8WU90 426 aaKnown RBP18.87■□□□□ 0.61
NKX3-1-202ENST00000523261 NPC1L1Q9UHC9 1359 aa18.86■□□□□ 0.61
NKX3-1-202ENST00000523261 RGL2O15211 777 aa18.86■□□□□ 0.61
NKX3-1-202ENST00000523261 TRPA1O75762 1119 aa18.86■□□□□ 0.61
NKX3-1-202ENST00000523261 HIRAP54198 1017 aaPredicted RBP18.86■□□□□ 0.61
NKX3-1-202ENST00000523261 CDC37L1Q7L3B6 337 aa18.86■□□□□ 0.61
NKX3-1-202ENST00000523261 NBPF15Q8N660 670 aa18.86■□□□□ 0.61
NKX3-1-202ENST00000523261 PANK3Q9H999 370 aa18.86■□□□□ 0.61
NKX3-1-202ENST00000523261 RNF186Q9NXI6 227 aa18.86■□□□□ 0.61
NKX3-1-202ENST00000523261 USP16Q9Y5T5 823 aa18.86■□□□□ 0.61
NKX3-1-202ENST00000523261 ABCC12Q96J65 1359 aa18.85■□□□□ 0.61
NKX3-1-202ENST00000523261 GMPSP49915 693 aaPredicted RBP18.85■□□□□ 0.61
NKX3-1-202ENST00000523261 CXCL9Q07325 125 aa18.85■□□□□ 0.61
NKX3-1-202ENST00000523261 HABP4Q5JVS0 413 aaKnown RBP18.85■□□□□ 0.61
NKX3-1-202ENST00000523261 HPS5Q9UPZ3 1129 aa18.85■□□□□ 0.61
NKX3-1-202ENST00000523261 KCNQ3O43525 872 aa18.84■□□□□ 0.61
NKX3-1-202ENST00000523261 HOXA10P31260 410 aaPredicted RBP18.84■□□□□ 0.61
NKX3-1-202ENST00000523261 KIF23Q02241 960 aaPredicted RBP18.84■□□□□ 0.61
NKX3-1-202ENST00000523261 RGMBQ6NW40 437 aa18.84■□□□□ 0.61
NKX3-1-202ENST00000523261 AKAP11Q9UKA4 1901 aa18.84■□□□□ 0.61
NKX3-1-202ENST00000523261 PPIP5K2O43314 1243 aa18.83■□□□□ 0.6
NKX3-1-202ENST00000523261 GTF2E1P29083 439 aaPredicted RBP18.83■□□□□ 0.6
NKX3-1-202ENST00000523261 TRPM4Q8TD43 1214 aa18.83■□□□□ 0.6
NKX3-1-202ENST00000523261 CDHR2Q9BYE9 1310 aa18.82■□□□□ 0.6
NKX3-1-202ENST00000523261 AOC3Q16853 763 aa18.82■□□□□ 0.6
NKX3-1-202ENST00000523261 DLK2Q6UY11 383 aa18.82■□□□□ 0.6
NKX3-1-202ENST00000523261 RIC1Q4ADV7 1423 aa18.82■□□□□ 0.6
NKX3-1-202ENST00000523261 PRAMEF22A3QJZ6 481 aa18.81■□□□□ 0.6
NKX3-1-202ENST00000523261 HLFQ16534 295 aa18.81■□□□□ 0.6
NKX3-1-202ENST00000523261 USP48Q86UV5 1035 aa18.81■□□□□ 0.6
NKX3-1-202ENST00000523261 RPGRQ92834 1020 aaKnown RBP18.81■□□□□ 0.6
NKX3-1-202ENST00000523261 CCDC102AQ96A19 550 aa18.81■□□□□ 0.6
NKX3-1-202ENST00000523261 ZNRF3Q9ULT6 936 aa18.81■□□□□ 0.6
NKX3-1-202ENST00000523261 KIF7Q2M1P5 1343 aa18.8■□□□□ 0.6
NKX3-1-202ENST00000523261 GNAT3A8MTJ3 354 aa18.8■□□□□ 0.6
NKX3-1-202ENST00000523261 NBPF26B4DH59 902 aa18.8■□□□□ 0.6
NKX3-1-202ENST00000523261 NBPF10Q6P3W6 841 aaKnown RBP18.8■□□□□ 0.6
NKX3-1-202ENST00000523261 NUTM1Q86Y26 1132 aa18.8■□□□□ 0.6
NKX3-1-202ENST00000523261 PPEF1O14829 653 aaPredicted RBP18.79■□□□□ 0.6
NKX3-1-202ENST00000523261 CRAMP1Q96RY5 1269 aa18.79■□□□□ 0.6
NKX3-1-202ENST00000523261 VPS33BQ9H267 617 aa18.79■□□□□ 0.6
NKX3-1-202ENST00000523261 CEMIPQ8WUJ3 1361 aa18.79■□□□□ 0.6
NKX3-1-202ENST00000523261 TCERG1O14776 1098 aaKnown RBP18.78■□□□□ 0.6
NKX3-1-202ENST00000523261 CSRNP1Q96S65 589 aa18.78■□□□□ 0.6
NKX3-1-202ENST00000523261 NYXQ9GZU5 481 aa18.78■□□□□ 0.6
NKX3-1-202ENST00000523261 GBA2Q9HCG7 927 aaPredicted RBP18.78■□□□□ 0.6
NKX3-1-202ENST00000523261 SHTN1A0MZ66 631 aa18.77■□□□□ 0.6
NKX3-1-202ENST00000523261 BTBD11A6QL63 1104 aa18.77■□□□□ 0.6
NKX3-1-202ENST00000523261 ZNF157P51786 506 aaPredicted RBP18.77■□□□□ 0.6
NKX3-1-202ENST00000523261 BCL2L13Q9BXK5 485 aa18.77■□□□□ 0.6
NKX3-1-202ENST00000523261 PKN2Q16513 984 aaKnown RBP18.76■□□□□ 0.59
NKX3-1-202ENST00000523261 C2orf69Q8N8R5 385 aa18.76■□□□□ 0.59
NKX3-1-202ENST00000523261 GAS2L2Q8NHY3 880 aa18.76■□□□□ 0.59
NKX3-1-202ENST00000523261 RBM17Q96I25 401 aaKnown RBP18.76■□□□□ 0.59
NKX3-1-202ENST00000523261 CNOT7Q9UIV1 285 aaKnown RBP18.76■□□□□ 0.59
NKX3-1-202ENST00000523261 RAD17O75943 681 aa18.75■□□□□ 0.59
NKX3-1-202ENST00000523261 SLC10A3P09131 477 aa18.75■□□□□ 0.59
NKX3-1-202ENST00000523261 SNRPA1P09661 255 aaKnown RBP18.75■□□□□ 0.59
NKX3-1-202ENST00000523261 RTFDC1Q9BY42 306 aaPredicted RBP18.75■□□□□ 0.59
NKX3-1-202ENST00000523261 DIAPH1O60610 1272 aaKnown RBP18.74■□□□□ 0.59
NKX3-1-202ENST00000523261 KRT26Q7Z3Y9 468 aa18.74■□□□□ 0.59
NKX3-1-202ENST00000523261 ATP6V0A2Q9Y487 856 aa18.74■□□□□ 0.59
NKX3-1-202ENST00000523261 IBTKQ9P2D0 1353 aaPredicted RBP18.73■□□□□ 0.59
NKX3-1-202ENST00000523261 H7C1D1 291 aa18.73■□□□□ 0.59
NKX3-1-202ENST00000523261 FXR1P51114 621 aaKnown RBP eCLIP18.73■□□□□ 0.59
NKX3-1-202ENST00000523261 TNIP1Q15025 636 aa18.73■□□□□ 0.59
NKX3-1-202ENST00000523261 SUPT20HQ8NEM7 779 aa18.73■□□□□ 0.59
NKX3-1-202ENST00000523261 POLR2AP24928 1970 aaKnown RBP18.73■□□□□ 0.59
NKX3-1-202ENST00000523261 C3orf67Q6ZVT6 689 aa18.72■□□□□ 0.59
NKX3-1-202ENST00000523261 MICALL2Q8IY33 904 aa18.72■□□□□ 0.59
NKX3-1-202ENST00000523261 KNSTRNQ9Y448 316 aa18.72■□□□□ 0.59
NKX3-1-202ENST00000523261 NUP98P52948 1817 aa18.72■□□□□ 0.59
NKX3-1-202ENST00000523261 KIAA2012Q0VF49 1180 aa18.71■□□□□ 0.59
NKX3-1-202ENST00000523261 HDAC9Q9UKV0 1011 aa18.71■□□□□ 0.59
NKX3-1-202ENST00000523261 MKI67P46013 3256 aaKnown RBP18.71■□□□□ 0.59
NKX3-1-202ENST00000523261 ADM5C9JUS6 153 aa18.7■□□□□ 0.58
NKX3-1-202ENST00000523261 SAMD7Q7Z3H4 446 aa18.7■□□□□ 0.58
NKX3-1-202ENST00000523261 REM2Q8IYK8 340 aaPredicted RBP18.7■□□□□ 0.58
NKX3-1-202ENST00000523261 ZNF296Q8WUU4 475 aaPredicted RBP18.7■□□□□ 0.58
NKX3-1-202ENST00000523261 TMX4Q9H1E5 349 aaPredicted RBP18.7■□□□□ 0.58
NKX3-1-202ENST00000523261 UBN2Q6ZU65 1347 aa18.7■□□□□ 0.58
NKX3-1-202ENST00000523261 YDJCA8MPS7 323 aa18.69■□□□□ 0.58
NKX3-1-202ENST00000523261 ERVV-1B6SEH8 477 aa18.69■□□□□ 0.58
NKX3-1-202ENST00000523261 AMER1Q5JTC6 1135 aaPredicted RBP18.69■□□□□ 0.58
NKX3-1-202ENST00000523261 EGFRP00533 1210 aa18.68■□□□□ 0.58
NKX3-1-202ENST00000523261 SUSD4Q5VX71 490 aa18.68■□□□□ 0.58
NKX3-1-202ENST00000523261 FBXO46Q6PJ61 603 aaPredicted RBP18.68■□□□□ 0.58
NKX3-1-202ENST00000523261 DPP8Q6V1X1 898 aaPredicted RBP18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms