RNA–Protein interactions for RNA: ENST00000515609.1

TPM3-222, Transcript of tropomyosin 3, humanhuman

TSL 3

Gene TPM3, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-222ENST00000515609 TSHZ2Q9NRE2 1034 aa11.68□□□□□ -0.54
TPM3-222ENST00000515609 PLSCR1O15162 318 aa11.67□□□□□ -0.54
TPM3-222ENST00000515609 CCDC57Q2TAC2 916 aa11.67□□□□□ -0.54
TPM3-222ENST00000515609 NLRP10Q86W26 655 aa11.67□□□□□ -0.54
TPM3-222ENST00000515609 ZNF34Q8IZ26 560 aa11.67□□□□□ -0.54
TPM3-222ENST00000515609 NYXQ9GZU5 481 aa11.67□□□□□ -0.54
TPM3-222ENST00000515609 OSBPL3Q9H4L5 887 aa11.67□□□□□ -0.54
TPM3-222ENST00000515609 COPRSQ9NQ92 184 aa11.67□□□□□ -0.54
TPM3-222ENST00000515609 TRMT112Q9UI30 125 aaKnown RBP11.67□□□□□ -0.54
TPM3-222ENST00000515609 TBC1D2BQ9UPU7 963 aa11.67□□□□□ -0.54
TPM3-222ENST00000515609 EXOC6BQ9Y2D4 811 aa11.67□□□□□ -0.54
TPM3-222ENST00000515609 COL5A3P25940 1745 aaPredicted RBP11.66□□□□□ -0.54
TPM3-222ENST00000515609 SH3TC1Q8TE82 1336 aa11.66□□□□□ -0.54
TPM3-222ENST00000515609 SBF2Q86WG5 1849 aa11.66□□□□□ -0.54
TPM3-222ENST00000515609 ERC2O15083 957 aa11.66□□□□□ -0.54
TPM3-222ENST00000515609 GNPATO15228 680 aa11.66□□□□□ -0.54
TPM3-222ENST00000515609 TRAPPC3LQ5T215 181 aa11.66□□□□□ -0.54
TPM3-222ENST00000515609 ILDR1Q86SU0 546 aaPredicted RBP11.66□□□□□ -0.54
TPM3-222ENST00000515609 FLAD1Q8NFF5 587 aa11.66□□□□□ -0.54
TPM3-222ENST00000515609 RHPN1Q8TCX5 695 aa11.66□□□□□ -0.54
TPM3-222ENST00000515609 UTP14AQ9BVJ6 771 aaKnown RBP11.66□□□□□ -0.54
TPM3-222ENST00000515609 NARFQ9UHQ1 456 aa11.66□□□□□ -0.54
TPM3-222ENST00000515609 APBB1O00213 710 aa11.65□□□□□ -0.54
TPM3-222ENST00000515609 PDE8AO60658 829 aa11.65□□□□□ -0.54
TPM3-222ENST00000515609 CAMTA2O94983 1202 aa11.65□□□□□ -0.54
TPM3-222ENST00000515609 IFIT2P09913 472 aaKnown RBP11.65□□□□□ -0.54
TPM3-222ENST00000515609 MX1P20591 662 aa11.65□□□□□ -0.54
TPM3-222ENST00000515609 RFC4P35249 363 aa11.65□□□□□ -0.54
TPM3-222ENST00000515609 CASP7P55210 303 aa11.65□□□□□ -0.54
TPM3-222ENST00000515609 IFIT5Q13325 482 aaKnown RBP11.65□□□□□ -0.54
TPM3-222ENST00000515609 TAF7LQ5H9L4 462 aa11.65□□□□□ -0.54
TPM3-222ENST00000515609 LMBR1LQ6UX01 489 aa11.65□□□□□ -0.54
TPM3-222ENST00000515609 LINC00116Q8NCU8 138 aa11.65□□□□□ -0.54
TPM3-222ENST00000515609 CHMP3Q9Y3E7 222 aa11.65□□□□□ -0.54
TPM3-222ENST00000515609 LY75O60449 1722 aa11.65□□□□□ -0.54
TPM3-222ENST00000515609 TTC41PQ6P2S7 1318 aa11.64□□□□□ -0.55
TPM3-222ENST00000515609 CIAO1O76071 339 aa11.64□□□□□ -0.55
TPM3-222ENST00000515609 TRIM37O94972 964 aa11.64□□□□□ -0.55
TPM3-222ENST00000515609 SSFA2P28290 1259 aa11.64□□□□□ -0.55
TPM3-222ENST00000515609 ANP32AP39687 249 aaKnown RBP11.64□□□□□ -0.55
TPM3-222ENST00000515609 IL15P40933 162 aaPredicted RBP11.64□□□□□ -0.55
TPM3-222ENST00000515609 FAM182BQ5T319 152 aa11.64□□□□□ -0.55
TPM3-222ENST00000515609 PLEKHM2Q8IWE5 1019 aa11.64□□□□□ -0.55
TPM3-222ENST00000515609 KAZALD1Q96I82 304 aa11.64□□□□□ -0.55
TPM3-222ENST00000515609 STAP2Q9UGK3 403 aa11.64□□□□□ -0.55
TPM3-222ENST00000515609 NIP7Q9Y221 180 aaKnown RBP eCLIP11.64□□□□□ -0.55
TPM3-222ENST00000515609 ANKRD36CQ5JPF3 1778 aa11.64□□□□□ -0.55
TPM3-222ENST00000515609 IRS4O14654 1257 aaPredicted RBP11.63□□□□□ -0.55
TPM3-222ENST00000515609 GPTP24298 496 aa11.63□□□□□ -0.55
TPM3-222ENST00000515609 GTF2E1P29083 439 aaPredicted RBP11.63□□□□□ -0.55
TPM3-222ENST00000515609 PDE1AP54750 535 aa11.63□□□□□ -0.55
TPM3-222ENST00000515609 FOXO4P98177 505 aa11.63□□□□□ -0.55
TPM3-222ENST00000515609 HLFQ16534 295 aa11.63□□□□□ -0.55
TPM3-222ENST00000515609 TTC22Q5TAA0 569 aa11.63□□□□□ -0.55
TPM3-222ENST00000515609 SETDB2Q96T68 719 aa11.63□□□□□ -0.55
TPM3-222ENST00000515609 GPR108Q9NPR9 543 aa11.63□□□□□ -0.55
TPM3-222ENST00000515609 AKAP2Q9Y2D5 859 aa11.63□□□□□ -0.55
TPM3-222ENST00000515609 ANKRD18BA2A2Z9 1011 aa11.62□□□□□ -0.55
TPM3-222ENST00000515609 CDC45O75419 566 aa11.62□□□□□ -0.55
TPM3-222ENST00000515609 GLRX3O76003 335 aaKnown RBP11.62□□□□□ -0.55
TPM3-222ENST00000515609 CSF1RP07333 972 aa11.62□□□□□ -0.55
TPM3-222ENST00000515609 CTSWP56202 376 aa11.62□□□□□ -0.55
TPM3-222ENST00000515609 SF3B2Q13435 895 aaKnown RBP11.62□□□□□ -0.55
TPM3-222ENST00000515609 CCDC152Q4G0S7 254 aa11.62□□□□□ -0.55
TPM3-222ENST00000515609 TPTE2Q6XPS3 522 aa11.62□□□□□ -0.55
TPM3-222ENST00000515609 TICAM2Q86XR7 235 aa11.62□□□□□ -0.55
TPM3-222ENST00000515609 FAM89AQ96GI7 184 aa11.62□□□□□ -0.55
TPM3-222ENST00000515609 RBM19Q9Y4C8 960 aaKnown RBP11.62□□□□□ -0.55
TPM3-222ENST00000515609 NUP98P52948 1817 aa11.61□□□□□ -0.55
TPM3-222ENST00000515609 BRWD3Q6RI45 1802 aa11.61□□□□□ -0.55
TPM3-222ENST00000515609 NPHP1O15259 732 aa11.61□□□□□ -0.55
TPM3-222ENST00000515609 APBA3O96018 575 aa11.61□□□□□ -0.55
TPM3-222ENST00000515609 ECHDC1Q9NTX5 307 aa11.61□□□□□ -0.55
TPM3-222ENST00000515609 CEP126Q9P2H0 1117 aa11.61□□□□□ -0.55
TPM3-222ENST00000515609 RTL9Q8NET4 1388 aa11.6□□□□□ -0.55
TPM3-222ENST00000515609 EYA2O00167 538 aa11.6□□□□□ -0.55
TPM3-222ENST00000515609 PTPN12Q05209 780 aaKnown RBP11.6□□□□□ -0.55
TPM3-222ENST00000515609 TXNRD1Q16881 649 aa11.6□□□□□ -0.55
TPM3-222ENST00000515609 C8orf34Q49A92 452 aa11.6□□□□□ -0.55
TPM3-222ENST00000515609 C4BP0C0L5 1744 aa11.6□□□□□ -0.55
TPM3-222ENST00000515609 USP42Q9H9J4 1324 aaKnown RBP11.6□□□□□ -0.55
TPM3-222ENST00000515609 HIP1O00291 1037 aa11.59□□□□□ -0.55
TPM3-222ENST00000515609 SMARCA5O60264 1052 aaPredicted RBP11.59□□□□□ -0.55
TPM3-222ENST00000515609 RFX5P48382 616 aaPredicted RBP11.59□□□□□ -0.55
TPM3-222ENST00000515609 RTL5Q5HYW3 569 aaPredicted RBP11.59□□□□□ -0.55
TPM3-222ENST00000515609 EPHA10Q5JZY3 1008 aa11.59□□□□□ -0.55
TPM3-222ENST00000515609 PTF1AQ7RTS3 328 aa11.59□□□□□ -0.55
TPM3-222ENST00000515609 AACSQ86V21 672 aa11.59□□□□□ -0.55
TPM3-222ENST00000515609 CNTROBQ8N137 903 aa11.59□□□□□ -0.55
TPM3-222ENST00000515609 TTLL11Q8NHH1 800 aa11.59□□□□□ -0.55
TPM3-222ENST00000515609 ARHGEF1Q92888 912 aaKnown RBP11.59□□□□□ -0.55
TPM3-222ENST00000515609 DDRGK1Q96HY6 314 aa11.59□□□□□ -0.55
TPM3-222ENST00000515609 CDC5LQ99459 802 aaKnown RBP11.59□□□□□ -0.55
TPM3-222ENST00000515609 SIL1Q9H173 461 aa11.59□□□□□ -0.55
TPM3-222ENST00000515609 IL1RAPL2Q9NP60 686 aa11.59□□□□□ -0.55
TPM3-222ENST00000515609 CARMIL3Q8ND23 1372 aa11.58□□□□□ -0.56
TPM3-222ENST00000515609 MYH14Q7Z406 1995 aaKnown RBP11.58□□□□□ -0.56
TPM3-222ENST00000515609 REC8O95072 547 aa11.58□□□□□ -0.56
TPM3-222ENST00000515609 LRRFIP1Q32MZ4 808 aaKnown RBP11.58□□□□□ -0.56
TPM3-222ENST00000515609 SLC10A5Q5PT55 438 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms