RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 DNAAF4Q8WXU2 420 aa13.06□□□□□ -0.32
TCOF1-211ENST00000513346 IPO4Q8TEX9 1081 aaKnown RBP13.05□□□□□ -0.32
TCOF1-211ENST00000513346 CCDC85AQ96PX6 553 aaPredicted RBP13.05□□□□□ -0.32
TCOF1-211ENST00000513346 BRMS1Q9HCU9 246 aa13.05□□□□□ -0.32
TCOF1-211ENST00000513346 IBTKQ9P2D0 1353 aaPredicted RBP13.05□□□□□ -0.32
TCOF1-211ENST00000513346 SLC3A2P08195 630 aaKnown RBP13.05□□□□□ -0.32
TCOF1-211ENST00000513346 PDE1AP54750 535 aa13.05□□□□□ -0.32
TCOF1-211ENST00000513346 CCDC148Q8NFR7 591 aa13.05□□□□□ -0.32
TCOF1-211ENST00000513346 SMARCC1Q92922 1105 aaPredicted RBP13.05□□□□□ -0.32
TCOF1-211ENST00000513346 DCTPP1Q9H773 170 aa13.05□□□□□ -0.32
TCOF1-211ENST00000513346 LRRFIP2Q9Y608 721 aaKnown RBP13.05□□□□□ -0.32
TCOF1-211ENST00000513346 MNAT1P51948 309 aa13.05□□□□□ -0.32
TCOF1-211ENST00000513346 IKQ13123 557 aaPredicted RBP13.05□□□□□ -0.32
TCOF1-211ENST00000513346 C16orf71Q8IYS4 520 aaPredicted RBP13.05□□□□□ -0.32
TCOF1-211ENST00000513346 FSIP1Q8NA03 581 aa13.05□□□□□ -0.32
TCOF1-211ENST00000513346 C8orf37Q96NL8 207 aa13.05□□□□□ -0.32
TCOF1-211ENST00000513346 EIF2AK4Q9P2K8 1649 aaKnown RBP13.05□□□□□ -0.32
TCOF1-211ENST00000513346 GNG11P61952 73 aa13.05□□□□□ -0.32
TCOF1-211ENST00000513346 FKBP4Q02790 459 aaKnown RBP eCLIP13.05□□□□□ -0.32
TCOF1-211ENST00000513346 ZFP91Q96JP5 570 aaPredicted RBP13.05□□□□□ -0.32
TCOF1-211ENST00000513346 DNAJC25Q9H1X3 360 aa13.05□□□□□ -0.32
TCOF1-211ENST00000513346 POLKQ9UBT6 870 aa13.05□□□□□ -0.32
TCOF1-211ENST00000513346 COL17A1Q9UMD9 1497 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-211ENST00000513346 TTC21BQ7Z4L5 1316 aa13.04□□□□□ -0.32
TCOF1-211ENST00000513346 YEATS2Q9ULM3 1422 aa13.04□□□□□ -0.32
TCOF1-211ENST00000513346 BICDL1Q6ZP65 573 aa13.04□□□□□ -0.32
TCOF1-211ENST00000513346 GTF3C6Q969F1 213 aa13.04□□□□□ -0.32
TCOF1-211ENST00000513346 PTPRCP08575 1304 aa13.04□□□□□ -0.32
TCOF1-211ENST00000513346 ATP2B1P20020 1258 aa13.04□□□□□ -0.32
TCOF1-211ENST00000513346 LARP1Q6PKG0 1096 aaKnown RBP13.04□□□□□ -0.32
TCOF1-211ENST00000513346 CCDC69A6NI79 296 aa13.04□□□□□ -0.32
TCOF1-211ENST00000513346 CCDC43Q96MW1 224 aaKnown RBP13.04□□□□□ -0.32
TCOF1-211ENST00000513346 ZFYVE16Q7Z3T8 1539 aa13.04□□□□□ -0.32
TCOF1-211ENST00000513346 NACAP1Q9BZK3 213 aa13.03□□□□□ -0.32
TCOF1-211ENST00000513346 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.03□□□□□ -0.32
TCOF1-211ENST00000513346 CCAR1Q8IX12 1150 aaKnown RBP13.03□□□□□ -0.32
TCOF1-211ENST00000513346 TTC31Q49AM3 519 aaPredicted RBP13.03□□□□□ -0.32
TCOF1-211ENST00000513346 CCDC181Q5TID7 509 aa13.03□□□□□ -0.32
TCOF1-211ENST00000513346 RSPH14Q9UHP6 348 aa13.03□□□□□ -0.32
TCOF1-211ENST00000513346 MAGI2Q86UL8 1455 aa13.03□□□□□ -0.32
TCOF1-211ENST00000513346 TTC21AQ8NDW8 1320 aa13.03□□□□□ -0.32
TCOF1-211ENST00000513346 CAPN2P17655 700 aa13.03□□□□□ -0.32
TCOF1-211ENST00000513346 LUZP1Q86V48 1076 aa13.03□□□□□ -0.32
TCOF1-211ENST00000513346 PUS7Q96PZ0 661 aaKnown RBP13.03□□□□□ -0.32
TCOF1-211ENST00000513346 TSPOAP1O95153 1857 aa13.02□□□□□ -0.32
TCOF1-211ENST00000513346 TSHZ3Q63HK5 1081 aa13.02□□□□□ -0.32
TCOF1-211ENST00000513346 FLIIQ13045 1269 aa13.02□□□□□ -0.33
TCOF1-211ENST00000513346 MRPL50Q8N5N7 158 aaKnown RBP13.02□□□□□ -0.33
TCOF1-211ENST00000513346 PPIP5K1Q6PFW1 1433 aa13.02□□□□□ -0.33
TCOF1-211ENST00000513346 MAGEC2Q9UBF1 373 aaPredicted RBP13.02□□□□□ -0.33
TCOF1-211ENST00000513346 CFAP74Q9C0B2 1584 aa13.02□□□□□ -0.33
TCOF1-211ENST00000513346 KAT6BQ8WYB5 2073 aa13.02□□□□□ -0.33
TCOF1-211ENST00000513346 ZSCAN25Q6NSZ9 544 aa13.01□□□□□ -0.33
TCOF1-211ENST00000513346 ATP7AQ04656 1500 aa13.01□□□□□ -0.33
TCOF1-211ENST00000513346 IGHMBP2P38935 993 aaKnown RBP13.01□□□□□ -0.33
TCOF1-211ENST00000513346 MCM6Q14566 821 aa13.01□□□□□ -0.33
TCOF1-211ENST00000513346 KRBA2Q6ZNG9 492 aa13.01□□□□□ -0.33
TCOF1-211ENST00000513346 MICALCLQ6ZW33 695 aa13.01□□□□□ -0.33
TCOF1-211ENST00000513346 TMX1Q9H3N1 280 aa13.01□□□□□ -0.33
TCOF1-211ENST00000513346 ZSCAN16Q9H4T2 348 aaPredicted RBP13.01□□□□□ -0.33
TCOF1-211ENST00000513346 A0A1W2PP64 1363 aa13.01□□□□□ -0.33
TCOF1-211ENST00000513346 GOLGA6L7A0A1B0GV03 622 aa13.01□□□□□ -0.33
TCOF1-211ENST00000513346 CCDC12Q8WUD4 166 aaPredicted RBP13.01□□□□□ -0.33
TCOF1-211ENST00000513346 CHD1O14646 1710 aa13□□□□□ -0.33
TCOF1-211ENST00000513346 SYT10Q6XYQ8 523 aa13□□□□□ -0.33
TCOF1-211ENST00000513346 DDX17Q92841 729 aaKnown RBP13□□□□□ -0.33
TCOF1-211ENST00000513346 ZSWIM4Q9H7M6 989 aa13□□□□□ -0.33
TCOF1-211ENST00000513346 USP19O94966 1318 aa13□□□□□ -0.33
TCOF1-211ENST00000513346 DBF4Q9UBU7 674 aaPredicted RBP13□□□□□ -0.33
TCOF1-211ENST00000513346 A0A1B0GUL7 405 aa13□□□□□ -0.33
TCOF1-211ENST00000513346 BIN1O00499 593 aa13□□□□□ -0.33
TCOF1-211ENST00000513346 SYT1P21579 422 aa13□□□□□ -0.33
TCOF1-211ENST00000513346 MYD88Q99836 296 aa13□□□□□ -0.33
TCOF1-211ENST00000513346 MYO6Q9UM54 1294 aa13□□□□□ -0.33
TCOF1-211ENST00000513346 ZNF652Q9Y2D9 606 aa13□□□□□ -0.33
TCOF1-211ENST00000513346 ZBTB7BO15156 539 aaPredicted RBP12.99□□□□□ -0.33
TCOF1-211ENST00000513346 GPT2Q8TD30 523 aa12.99□□□□□ -0.33
TCOF1-211ENST00000513346 ELF2Q15723 593 aa12.99□□□□□ -0.33
TCOF1-211ENST00000513346 STK11IPQ8N1F8 1099 aa12.99□□□□□ -0.33
TCOF1-211ENST00000513346 NECAB1Q8N987 351 aa12.99□□□□□ -0.33
TCOF1-211ENST00000513346 MBD5Q9P267 1494 aa12.99□□□□□ -0.33
TCOF1-211ENST00000513346 BRD1O95696 1058 aa12.99□□□□□ -0.33
TCOF1-211ENST00000513346 EIF4A2Q14240 407 aaKnown RBP12.99□□□□□ -0.33
TCOF1-211ENST00000513346 MAST1Q9Y2H9 1570 aa12.99□□□□□ -0.33
TCOF1-211ENST00000513346 NPC1L1Q9UHC9 1359 aa12.99□□□□□ -0.33
TCOF1-211ENST00000513346 GADD45BO75293 160 aaPredicted RBP12.98□□□□□ -0.33
TCOF1-211ENST00000513346 IFNL2Q8IZJ0 200 aa12.98□□□□□ -0.33
TCOF1-211ENST00000513346 C8orf58Q8NAV2 365 aa12.98□□□□□ -0.33
TCOF1-211ENST00000513346 METTL24Q5JXM2 366 aa12.98□□□□□ -0.33
TCOF1-211ENST00000513346 PHACTR3Q96KR7 559 aa12.98□□□□□ -0.33
TCOF1-211ENST00000513346 TRMT2AQ8IZ69 625 aaKnown RBP12.98□□□□□ -0.33
TCOF1-211ENST00000513346 AOPEPQ8N6M6 819 aa12.98□□□□□ -0.33
TCOF1-211ENST00000513346 MEIS3Q99687 375 aa12.98□□□□□ -0.33
TCOF1-211ENST00000513346 CDKL5O76039 1030 aa12.98□□□□□ -0.33
TCOF1-211ENST00000513346 ANXA1P04083 346 aa12.98□□□□□ -0.33
TCOF1-211ENST00000513346 ATP2B2Q01814 1243 aa12.98□□□□□ -0.33
TCOF1-211ENST00000513346 ODF2Q5BJF6 829 aa12.98□□□□□ -0.33
TCOF1-211ENST00000513346 KIAA1328Q86T90 577 aa12.98□□□□□ -0.33
TCOF1-211ENST00000513346 ANKRD24Q8TF21 1146 aa12.98□□□□□ -0.33
TCOF1-211ENST00000513346 GOLGA1Q92805 767 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms