RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 FAM155AB1AL88 458 aaPredicted RBP12.53□□□□□ -0.4
NUP54-211ENST00000512151 PIP4K2AP48426 406 aaPredicted RBP12.53□□□□□ -0.4
NUP54-211ENST00000512151 HIRAP54198 1017 aaPredicted RBP12.53□□□□□ -0.4
NUP54-211ENST00000512151 GPRC5DQ9NZD1 345 aa12.53□□□□□ -0.4
NUP54-211ENST00000512151 HPS5Q9UPZ3 1129 aa12.53□□□□□ -0.4
NUP54-211ENST00000512151 CTU1Q7Z7A3 348 aaKnown RBP12.52□□□□□ -0.41
NUP54-211ENST00000512151 DZIP3Q86Y13 1208 aaKnown RBP12.52□□□□□ -0.41
NUP54-211ENST00000512151 LARGE2Q8N3Y3 721 aa12.52□□□□□ -0.41
NUP54-211ENST00000512151 ADARB2Q9NS39 739 aaKnown RBP12.52□□□□□ -0.41
NUP54-211ENST00000512151 RNF186Q9NXI6 227 aa12.52□□□□□ -0.41
NUP54-211ENST00000512151 SAGE1Q9NXZ1 904 aa12.52□□□□□ -0.41
NUP54-211ENST00000512151 PGAP2Q9UHJ9 254 aa12.52□□□□□ -0.41
NUP54-211ENST00000512151 FAM177BA6PVY3 158 aa12.51□□□□□ -0.41
NUP54-211ENST00000512151 TRPA1O75762 1119 aa12.51□□□□□ -0.41
NUP54-211ENST00000512151 MTHFSDQ2M296 383 aaKnown RBP12.51□□□□□ -0.41
NUP54-211ENST00000512151 GCC1Q96CN9 775 aa12.51□□□□□ -0.41
NUP54-211ENST00000512151 HUNKP57058 714 aa12.5□□□□□ -0.41
NUP54-211ENST00000512151 KIF23Q02241 960 aaPredicted RBP12.5□□□□□ -0.41
NUP54-211ENST00000512151 TTC5Q8N0Z6 440 aa12.5□□□□□ -0.41
NUP54-211ENST00000512151 NBPF15Q8N660 670 aa12.5□□□□□ -0.41
NUP54-211ENST00000512151 TRPM4Q8TD43 1214 aa12.5□□□□□ -0.41
NUP54-211ENST00000512151 SHTN1A0MZ66 631 aa12.49□□□□□ -0.41
NUP54-211ENST00000512151 ALDH1B1P30837 517 aa12.49□□□□□ -0.41
NUP54-211ENST00000512151 GMPSP49915 693 aaPredicted RBP12.49□□□□□ -0.41
NUP54-211ENST00000512151 FXR1P51114 621 aaKnown RBP eCLIP12.49□□□□□ -0.41
NUP54-211ENST00000512151 ZNF790Q6PG37 636 aa12.49□□□□□ -0.41
NUP54-211ENST00000512151 ABCC12Q96J65 1359 aa12.48□□□□□ -0.41
NUP54-211ENST00000512151 KCNQ3O43525 872 aa12.48□□□□□ -0.41
NUP54-211ENST00000512151 HMOX1P09601 288 aa12.48□□□□□ -0.41
NUP54-211ENST00000512151 CXCL9Q07325 125 aa12.48□□□□□ -0.41
NUP54-211ENST00000512151 CLEC4GQ6UXB4 293 aa12.48□□□□□ -0.41
NUP54-211ENST00000512151 USP48Q86UV5 1035 aa12.48□□□□□ -0.41
NUP54-211ENST00000512151 NIM1KQ8IY84 436 aa12.48□□□□□ -0.41
NUP54-211ENST00000512151 TEX13AQ9BXU3 409 aaPredicted RBP12.48□□□□□ -0.41
NUP54-211ENST00000512151 NPC1L1Q9UHC9 1359 aa12.48□□□□□ -0.41
NUP54-211ENST00000512151 AKAP11Q9UKA4 1901 aa12.47□□□□□ -0.41
NUP54-211ENST00000512151 CRY2Q49AN0 593 aa12.47□□□□□ -0.41
NUP54-211ENST00000512151 RGMBQ6NW40 437 aa12.47□□□□□ -0.41
NUP54-211ENST00000512151 TPTE2Q6XPS3 522 aa12.47□□□□□ -0.41
NUP54-211ENST00000512151 NIP7Q9Y221 180 aaKnown RBP eCLIP12.47□□□□□ -0.41
NUP54-211ENST00000512151 USP16Q9Y5T5 823 aa12.47□□□□□ -0.41
NUP54-211ENST00000512151 SIPA1L3O60292 1781 aaPredicted RBP12.47□□□□□ -0.41
NUP54-211ENST00000512151 PRAMEF22A3QJZ6 481 aa12.46□□□□□ -0.41
NUP54-211ENST00000512151 AOC3Q16853 763 aa12.46□□□□□ -0.41
NUP54-211ENST00000512151 CC2D2BQ6DHV5 1058 aa12.46□□□□□ -0.41
NUP54-211ENST00000512151 CDC37L1Q7L3B6 337 aa12.46□□□□□ -0.41
NUP54-211ENST00000512151 IL17REQ8NFR9 667 aa12.46□□□□□ -0.41
NUP54-211ENST00000512151 CSRNP1Q96S65 589 aa12.46□□□□□ -0.41
NUP54-211ENST00000512151 TCERG1O14776 1098 aaKnown RBP12.45□□□□□ -0.42
NUP54-211ENST00000512151 PPIP5K2O43314 1243 aa12.45□□□□□ -0.42
NUP54-211ENST00000512151 HLFQ16534 295 aa12.45□□□□□ -0.42
NUP54-211ENST00000512151 NPM2Q86SE8 214 aaKnown RBP12.44□□□□□ -0.42
NUP54-211ENST00000512151 NUTM1Q86Y26 1132 aa12.44□□□□□ -0.42
NUP54-211ENST00000512151 ZC3H15Q8WU90 426 aaKnown RBP12.44□□□□□ -0.42
NUP54-211ENST00000512151 FMNL2Q96PY5 1086 aa12.44□□□□□ -0.42
NUP54-211ENST00000512151 HOXA10P31260 410 aaPredicted RBP12.43□□□□□ -0.42
NUP54-211ENST00000512151 ZNF157P51786 506 aaPredicted RBP12.43□□□□□ -0.42
NUP54-211ENST00000512151 MORC1Q86VD1 984 aa12.43□□□□□ -0.42
NUP54-211ENST00000512151 GBA2Q9HCG7 927 aaPredicted RBP12.43□□□□□ -0.42
NUP54-211ENST00000512151 ZNRF3Q9ULT6 936 aa12.43□□□□□ -0.42
NUP54-211ENST00000512151 ZNF652Q9Y2D9 606 aa12.43□□□□□ -0.42
NUP54-211ENST00000512151 POLR2AP24928 1970 aaKnown RBP12.43□□□□□ -0.42
NUP54-211ENST00000512151 NBPF26B4DH59 902 aa12.43□□□□□ -0.42
NUP54-211ENST00000512151 SLC10A3P09131 477 aa12.43□□□□□ -0.42
NUP54-211ENST00000512151 NBPF10Q6P3W6 841 aaKnown RBP12.43□□□□□ -0.42
NUP54-211ENST00000512151 C3orf67Q6ZVT6 689 aa12.43□□□□□ -0.42
NUP54-211ENST00000512151 CCDC102AQ96A19 550 aa12.43□□□□□ -0.42
NUP54-211ENST00000512151 POLR3GLQ9BT43 218 aa12.43□□□□□ -0.42
NUP54-211ENST00000512151 RIC1Q4ADV7 1423 aa12.42□□□□□ -0.42
NUP54-211ENST00000512151 ADM5C9JUS6 153 aa12.42□□□□□ -0.42
NUP54-211ENST00000512151 PPEF1O14829 653 aaPredicted RBP12.42□□□□□ -0.42
NUP54-211ENST00000512151 ABCB7O75027 752 aa12.42□□□□□ -0.42
NUP54-211ENST00000512151 RAD17O75943 681 aa12.42□□□□□ -0.42
NUP54-211ENST00000512151 CNOT7Q9UIV1 285 aaKnown RBP12.42□□□□□ -0.42
NUP54-211ENST00000512151 EGFRP00533 1210 aa12.41□□□□□ -0.42
NUP54-211ENST00000512151 GTF2E1P29083 439 aaPredicted RBP12.41□□□□□ -0.42
NUP54-211ENST00000512151 TEFQ10587 303 aa12.41□□□□□ -0.42
NUP54-211ENST00000512151 PKN2Q16513 984 aaKnown RBP12.41□□□□□ -0.42
NUP54-211ENST00000512151 ZNF296Q8WUU4 475 aaPredicted RBP12.41□□□□□ -0.42
NUP54-211ENST00000512151 BCL2L13Q9BXK5 485 aa12.41□□□□□ -0.42
NUP54-211ENST00000512151 PANK3Q9H999 370 aa12.41□□□□□ -0.42
NUP54-211ENST00000512151 CDHR2Q9BYE9 1310 aa12.4□□□□□ -0.42
NUP54-211ENST00000512151 GRIPAP1Q4V328 841 aa12.4□□□□□ -0.42
NUP54-211ENST00000512151 SAMD7Q7Z3H4 446 aa12.4□□□□□ -0.42
NUP54-211ENST00000512151 KRT26Q7Z3Y9 468 aa12.4□□□□□ -0.42
NUP54-211ENST00000512151 MICALL2Q8IY33 904 aa12.4□□□□□ -0.42
NUP54-211ENST00000512151 C2orf69Q8N8R5 385 aa12.4□□□□□ -0.42
NUP54-211ENST00000512151 RPGRQ92834 1020 aaKnown RBP12.4□□□□□ -0.42
NUP54-211ENST00000512151 KIF7Q2M1P5 1343 aa12.39□□□□□ -0.43
NUP54-211ENST00000512151 TRIOBPQ9H2D6 2365 aa12.39□□□□□ -0.43
NUP54-211ENST00000512151 POTEFA5A3E0 1075 aa12.39□□□□□ -0.43
NUP54-211ENST00000512151 YDJCA8MPS7 323 aa12.39□□□□□ -0.43
NUP54-211ENST00000512151 RGL2O15211 777 aa12.39□□□□□ -0.43
NUP54-211ENST00000512151 TBC1D8O95759 1140 aa12.39□□□□□ -0.43
NUP54-211ENST00000512151 NCBP3Q53F19 620 aaKnown RBP12.39□□□□□ -0.43
NUP54-211ENST00000512151 RASAL3Q86YV0 1011 aa12.39□□□□□ -0.43
NUP54-211ENST00000512151 CRAMP1Q96RY5 1269 aa12.39□□□□□ -0.43
NUP54-211ENST00000512151 HDAC9Q9UKV0 1011 aa12.39□□□□□ -0.43
NUP54-211ENST00000512151 DLL1O00548 723 aa12.38□□□□□ -0.43
NUP54-211ENST00000512151 FBXO46Q6PJ61 603 aaPredicted RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms