RNA–Protein interactions for RNA: ENST00000508249.1

UBE2D3-223, Transcript of ubiquitin conjugating enzyme E2 D3, human

TSL 4

Gene UBE2D3, Length 604 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-223	ENST00000508249	CLEC4G	Q6UXB4	293 aa		12.32	□□□□□ -0.44
UBE2D3-223	ENST00000508249	USP16	Q9Y5T5	823 aa		12.32	□□□□□ -0.44
UBE2D3-223	ENST00000508249	KDM3B	Q7LBC6	1761 aa		12.31	□□□□□ -0.44
UBE2D3-223	ENST00000508249	NBPF26	B4DH59	902 aa		12.31	□□□□□ -0.44
UBE2D3-223	ENST00000508249	DGKZ	Q13574	1117 aa		12.31	□□□□□ -0.44
UBE2D3-223	ENST00000508249	NBPF10	Q6P3W6	841 aa	Known RBP	12.31	□□□□□ -0.44
UBE2D3-223	ENST00000508249	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	12.31	□□□□□ -0.44
UBE2D3-223	ENST00000508249	NBPF15	Q8N660	670 aa		12.31	□□□□□ -0.44
UBE2D3-223	ENST00000508249	HHIPL1	Q96JK4	782 aa		12.31	□□□□□ -0.44
UBE2D3-223	ENST00000508249	CFAP53	Q96M91	514 aa		12.31	□□□□□ -0.44
UBE2D3-223	ENST00000508249	BEGAIN	Q9BUH8	593 aa		12.31	□□□□□ -0.44
UBE2D3-223	ENST00000508249	TEX13A	Q9BXU3	409 aa	Predicted RBP	12.31	□□□□□ -0.44
UBE2D3-223	ENST00000508249	GJA3	Q9Y6H8	435 aa		12.31	□□□□□ -0.44
UBE2D3-223	ENST00000508249	LRRC37A	A6NMS7	1700 aa		12.31	□□□□□ -0.44
UBE2D3-223	ENST00000508249	AKAP11	Q9UKA4	1901 aa		12.31	□□□□□ -0.44
UBE2D3-223	ENST00000508249	CA12	O43570	354 aa		12.3	□□□□□ -0.44
UBE2D3-223	ENST00000508249	CIAPIN1	Q6FI81	312 aa		12.3	□□□□□ -0.44
UBE2D3-223	ENST00000508249	USP50	Q70EL3	339 aa	Predicted RBP	12.3	□□□□□ -0.44
UBE2D3-223	ENST00000508249	FMNL2	Q96PY5	1086 aa		12.3	□□□□□ -0.44
UBE2D3-223	ENST00000508249	POLR2A	P24928	1970 aa	Known RBP	12.3	□□□□□ -0.44
UBE2D3-223	ENST00000508249	RGL2	O15211	777 aa		12.29	□□□□□ -0.44
UBE2D3-223	ENST00000508249	NPHP1	O15259	732 aa		12.29	□□□□□ -0.44
UBE2D3-223	ENST00000508249	DIAPH1	O60610	1272 aa	Known RBP	12.29	□□□□□ -0.44
UBE2D3-223	ENST00000508249	SOX10	P56693	466 aa		12.29	□□□□□ -0.44
UBE2D3-223	ENST00000508249	HLF	Q16534	295 aa		12.29	□□□□□ -0.44
UBE2D3-223	ENST00000508249	CFAP44	Q96MT7	982 aa		12.29	□□□□□ -0.44
UBE2D3-223	ENST00000508249	GLIS2	Q9BZE0	524 aa	Predicted RBP	12.29	□□□□□ -0.44
UBE2D3-223	ENST00000508249	GPRC5D	Q9NZD1	345 aa		12.29	□□□□□ -0.44
UBE2D3-223	ENST00000508249	TAF1	P21675	1872 aa		12.29	□□□□□ -0.44
UBE2D3-223	ENST00000508249	ANKRD36C	Q5JPF3	1778 aa		12.28	□□□□□ -0.44
UBE2D3-223	ENST00000508249	CELF2	O95319	508 aa	Known RBP	12.28	□□□□□ -0.44
UBE2D3-223	ENST00000508249	PGAP2	Q9UHJ9	254 aa		12.28	□□□□□ -0.44
UBE2D3-223	ENST00000508249	NIP7	Q9Y221	180 aa	Known RBP eCLIP	12.28	□□□□□ -0.44
UBE2D3-223	ENST00000508249	GNAT3	A8MTJ3	354 aa		12.27	□□□□□ -0.45
UBE2D3-223	ENST00000508249	FAM155A	B1AL88	458 aa	Predicted RBP	12.27	□□□□□ -0.45
UBE2D3-223	ENST00000508249	LMOD1	P29536	600 aa	Predicted RBP	12.27	□□□□□ -0.45
UBE2D3-223	ENST00000508249	HIRA	P54198	1017 aa	Predicted RBP	12.27	□□□□□ -0.45
UBE2D3-223	ENST00000508249	EIF6	P56537	245 aa	Known RBP	12.27	□□□□□ -0.45
UBE2D3-223	ENST00000508249	TEF	Q10587	303 aa		12.27	□□□□□ -0.45
UBE2D3-223	ENST00000508249	RALBP1	Q15311	655 aa		12.27	□□□□□ -0.45
UBE2D3-223	ENST00000508249	PRPF38B	Q5VTL8	546 aa	Known RBP	12.27	□□□□□ -0.45
UBE2D3-223	ENST00000508249	JDP2	Q8WYK2	163 aa		12.27	□□□□□ -0.45
UBE2D3-223	ENST00000508249	DLG5	Q8TDM6	1919 aa		12.27	□□□□□ -0.45
UBE2D3-223	ENST00000508249	COL4A1	P02462	1669 aa		12.26	□□□□□ -0.45
UBE2D3-223	ENST00000508249	FAM177B	A6PVY3	158 aa		12.26	□□□□□ -0.45
UBE2D3-223	ENST00000508249	ALDH1B1	P30837	517 aa		12.26	□□□□□ -0.45
UBE2D3-223	ENST00000508249	HOXA10	P31260	410 aa	Predicted RBP	12.26	□□□□□ -0.45
UBE2D3-223	ENST00000508249	DLK2	Q6UY11	383 aa		12.26	□□□□□ -0.45
UBE2D3-223	ENST00000508249	TPTE2	Q6XPS3	522 aa		12.26	□□□□□ -0.45
UBE2D3-223	ENST00000508249	C3orf67	Q6ZVT6	689 aa		12.26	□□□□□ -0.45
UBE2D3-223	ENST00000508249	NUTM1	Q86Y26	1132 aa		12.26	□□□□□ -0.45
UBE2D3-223	ENST00000508249	TRPM4	Q8TD43	1214 aa		12.26	□□□□□ -0.45
UBE2D3-223	ENST00000508249	ADARB2	Q9NS39	739 aa	Known RBP	12.26	□□□□□ -0.45
UBE2D3-223	ENST00000508249	NUDC	Q9Y266	331 aa		12.26	□□□□□ -0.45
UBE2D3-223	ENST00000508249	UBN2	Q6ZU65	1347 aa		12.26	□□□□□ -0.45
UBE2D3-223	ENST00000508249	IBTK	Q9P2D0	1353 aa	Predicted RBP	12.26	□□□□□ -0.45
UBE2D3-223	ENST00000508249	SZT2	Q5T011	3432 aa		12.25	□□□□□ -0.45
UBE2D3-223	ENST00000508249	SHTN1	A0MZ66	631 aa		12.25	□□□□□ -0.45
UBE2D3-223	ENST00000508249	PPP2R1A	P30153	589 aa		12.25	□□□□□ -0.45
UBE2D3-223	ENST00000508249	LARGE2	Q8N3Y3	721 aa		12.25	□□□□□ -0.45
UBE2D3-223	ENST00000508249	ZNF652	Q9Y2D9	606 aa		12.25	□□□□□ -0.45
UBE2D3-223	ENST00000508249	CXCL9	Q07325	125 aa		12.24	□□□□□ -0.45
UBE2D3-223	ENST00000508249	AOC3	Q16853	763 aa		12.24	□□□□□ -0.45
UBE2D3-223	ENST00000508249	CC2D2B	Q6DHV5	1058 aa		12.24	□□□□□ -0.45
UBE2D3-223	ENST00000508249	DDX60	Q8IY21	1712 aa	Known RBP	12.24	□□□□□ -0.45
UBE2D3-223	ENST00000508249	PHACTR3	Q96KR7	559 aa		12.24	□□□□□ -0.45
UBE2D3-223	ENST00000508249	SCN9A	Q15858	1988 aa		12.23	□□□□□ -0.45
UBE2D3-223	ENST00000508249	BTBD11	A6QL63	1104 aa		12.23	□□□□□ -0.45
UBE2D3-223	ENST00000508249	GMPS	P49915	693 aa	Predicted RBP	12.23	□□□□□ -0.45
UBE2D3-223	ENST00000508249	DDX10	Q13206	875 aa	Known RBP	12.23	□□□□□ -0.45
UBE2D3-223	ENST00000508249	GAS2L2	Q8NHY3	880 aa		12.23	□□□□□ -0.45
UBE2D3-223	ENST00000508249	CDHR2	Q9BYE9	1310 aa		12.22	□□□□□ -0.45
UBE2D3-223	ENST00000508249	PPEF1	O14829	653 aa	Predicted RBP	12.22	□□□□□ -0.45
UBE2D3-223	ENST00000508249	NOG	Q13253	232 aa		12.22	□□□□□ -0.45
UBE2D3-223	ENST00000508249	NIM1K	Q8IY84	436 aa		12.22	□□□□□ -0.45
UBE2D3-223	ENST00000508249	SAGE1	Q9NXZ1	904 aa		12.22	□□□□□ -0.45
UBE2D3-223	ENST00000508249	RBBP6	Q7Z6E9	1792 aa	Known RBP	12.22	□□□□□ -0.45
UBE2D3-223	ENST00000508249	PSME4	Q14997	1843 aa		12.21	□□□□□ -0.45
UBE2D3-223	ENST00000508249	ZNF316	A6NFI3	1004 aa	Predicted RBP	12.21	□□□□□ -0.45
UBE2D3-223	ENST00000508249	PPIP5K2	O43314	1243 aa		12.21	□□□□□ -0.45
UBE2D3-223	ENST00000508249	NTSR2	O95665	410 aa		12.21	□□□□□ -0.45
UBE2D3-223	ENST00000508249	SNRPA1	P09661	255 aa	Known RBP	12.21	□□□□□ -0.45
UBE2D3-223	ENST00000508249	CNGB1	Q14028	1251 aa	Predicted RBP	12.21	□□□□□ -0.45
UBE2D3-223	ENST00000508249	CRAMP1	Q96RY5	1269 aa		12.21	□□□□□ -0.45
UBE2D3-223	ENST00000508249	RTFDC1	Q9BY42	306 aa	Predicted RBP	12.21	□□□□□ -0.45
UBE2D3-223	ENST00000508249	ZNF646	O15015	1829 aa	Predicted RBP	12.21	□□□□□ -0.46
UBE2D3-223	ENST00000508249	YDJC	A8MPS7	323 aa		12.2	□□□□□ -0.46
UBE2D3-223	ENST00000508249	U2SURP	O15042	1029 aa	Known RBP	12.2	□□□□□ -0.46
UBE2D3-223	ENST00000508249	EGFR	P00533	1210 aa		12.2	□□□□□ -0.46
UBE2D3-223	ENST00000508249	ZC3H15	Q8WU90	426 aa	Known RBP	12.2	□□□□□ -0.46
UBE2D3-223	ENST00000508249	RSPH6A	Q9H0K4	717 aa		12.2	□□□□□ -0.46
UBE2D3-223	ENST00000508249	ZNF408	Q9H9D4	720 aa		12.2	□□□□□ -0.46
UBE2D3-223	ENST00000508249	MYBBP1A	Q9BQG0	1328 aa	Known RBP	12.19	□□□□□ -0.46
UBE2D3-223	ENST00000508249	HUNK	P57058	714 aa		12.19	□□□□□ -0.46
UBE2D3-223	ENST00000508249	GRIPAP1	Q4V328	841 aa		12.19	□□□□□ -0.46
UBE2D3-223	ENST00000508249	TTLL7	Q6ZT98	887 aa		12.19	□□□□□ -0.46
UBE2D3-223	ENST00000508249	NPM2	Q86SE8	214 aa	Known RBP	12.19	□□□□□ -0.46
UBE2D3-223	ENST00000508249	PNN	Q9H307	717 aa	Known RBP	12.19	□□□□□ -0.46
UBE2D3-223	ENST00000508249	RNF186	Q9NXI6	227 aa		12.19	□□□□□ -0.46
UBE2D3-223	ENST00000508249	ZNRF3	Q9ULT6	936 aa		12.19	□□□□□ -0.46

Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms