RNA–Protein interactions for RNA: ENST00000498751.1

SYNE1-231, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 4

Gene SYNE1, Length 578 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-231	ENST00000498751	CDC45	O75419	566 aa		9.47	□□□□□ -0.89
SYNE1-231	ENST00000498751	NBPF7	P0C2Y1	421 aa	Predicted RBP	9.47	□□□□□ -0.89
SYNE1-231	ENST00000498751	PDE1A	P54750	535 aa		9.47	□□□□□ -0.89
SYNE1-231	ENST00000498751	EVA1C	P58658	441 aa		9.47	□□□□□ -0.89
SYNE1-231	ENST00000498751	SLC39A6	Q13433	755 aa		9.47	□□□□□ -0.89
SYNE1-231	ENST00000498751	PROSER3	Q2NL68	480 aa		9.47	□□□□□ -0.89
SYNE1-231	ENST00000498751	PLBD2	Q8NHP8	589 aa		9.47	□□□□□ -0.89
SYNE1-231	ENST00000498751	KIF1BP	Q96EK5	621 aa		9.47	□□□□□ -0.89
SYNE1-231	ENST00000498751	IL17RA	Q96F46	866 aa		9.47	□□□□□ -0.89
SYNE1-231	ENST00000498751	MFRP	Q9BY79	579 aa		9.47	□□□□□ -0.89
SYNE1-231	ENST00000498751	BTG4	Q9NY30	223 aa		9.47	□□□□□ -0.89
SYNE1-231	ENST00000498751	MAP3K2	Q9Y2U5	619 aa		9.47	□□□□□ -0.89
SYNE1-231	ENST00000498751	USP16	Q9Y5T5	823 aa		9.47	□□□□□ -0.89
SYNE1-231	ENST00000498751	ZNF831	Q5JPB2	1677 aa		9.47	□□□□□ -0.89
SYNE1-231	ENST00000498751	NUP188	Q5SRE5	1749 aa		9.46	□□□□□ -0.89
SYNE1-231	ENST00000498751	ARFGEF2	Q9Y6D5	1785 aa		9.46	□□□□□ -0.9
SYNE1-231	ENST00000498751	PRAMEF22	A3QJZ6	481 aa		9.46	□□□□□ -0.9
SYNE1-231	ENST00000498751	NEURL1B	A8MQ27	555 aa		9.46	□□□□□ -0.9
SYNE1-231	ENST00000498751	IGKV5-2	P06315	115 aa		9.46	□□□□□ -0.9
SYNE1-231	ENST00000498751	TRIM28	Q13263	835 aa	Known RBP	9.46	□□□□□ -0.9
SYNE1-231	ENST00000498751	RABL6	Q3YEC7	729 aa	Predicted RBP	9.46	□□□□□ -0.9
SYNE1-231	ENST00000498751	BARGIN	Q6ZT62	677 aa		9.46	□□□□□ -0.9
SYNE1-231	ENST00000498751	ANKRD13D	Q6ZTN6	518 aa		9.46	□□□□□ -0.9
SYNE1-231	ENST00000498751	NECTIN2	Q92692	538 aa		9.46	□□□□□ -0.9
SYNE1-231	ENST00000498751	NEXN	Q0ZGT2	675 aa		9.45	□□□□□ -0.9
SYNE1-231	ENST00000498751	TBC1D9	Q6ZT07	1266 aa		9.45	□□□□□ -0.9
SYNE1-231	ENST00000498751	COPS6	Q7L5N1	327 aa		9.45	□□□□□ -0.9
SYNE1-231	ENST00000498751	PPP1R42	Q7Z4L9	355 aa		9.45	□□□□□ -0.9
SYNE1-231	ENST00000498751	ERC1	Q8IUD2	1116 aa		9.45	□□□□□ -0.9
SYNE1-231	ENST00000498751	SNX21	Q969T3	373 aa		9.45	□□□□□ -0.9
SYNE1-231	ENST00000498751	KAZALD1	Q96I82	304 aa		9.45	□□□□□ -0.9
SYNE1-231	ENST00000498751	C22orf23	Q9BZE7	217 aa		9.45	□□□□□ -0.9
SYNE1-231	ENST00000498751	SPATA31A1	Q5TZJ5	1347 aa		9.45	□□□□□ -0.9
SYNE1-231	ENST00000498751	EMP3	P54852	163 aa		9.44	□□□□□ -0.9
SYNE1-231	ENST00000498751	CASP7	P55210	303 aa		9.44	□□□□□ -0.9
SYNE1-231	ENST00000498751	GCKR	Q14397	625 aa		9.44	□□□□□ -0.9
SYNE1-231	ENST00000498751	BECN1	Q14457	450 aa		9.44	□□□□□ -0.9
SYNE1-231	ENST00000498751	TICAM2	Q86XR7	235 aa		9.44	□□□□□ -0.9
SYNE1-231	ENST00000498751	RHPN1	Q8TCX5	695 aa		9.44	□□□□□ -0.9
SYNE1-231	ENST00000498751	USP35	Q9P2H5	1018 aa		9.44	□□□□□ -0.9
SYNE1-231	ENST00000498751	TTC41P	Q6P2S7	1318 aa		9.44	□□□□□ -0.9
SYNE1-231	ENST00000498751	RREB1	Q92766	1687 aa		9.44	□□□□□ -0.9
SYNE1-231	ENST00000498751	ITGB4	P16144	1822 aa		9.43	□□□□□ -0.9
SYNE1-231	ENST00000498751	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	9.43	□□□□□ -0.9
SYNE1-231	ENST00000498751	POTEB3	A0JP26	581 aa		9.43	□□□□□ -0.9
SYNE1-231	ENST00000498751	NBPF26	B4DH59	902 aa		9.43	□□□□□ -0.9
SYNE1-231	ENST00000498751	ANXA1	P04083	346 aa		9.43	□□□□□ -0.9
SYNE1-231	ENST00000498751	SDS	P20132	328 aa		9.43	□□□□□ -0.9
SYNE1-231	ENST00000498751	MX1	P20591	662 aa		9.43	□□□□□ -0.9
SYNE1-231	ENST00000498751	NBPF14	Q5TI25	921 aa		9.43	□□□□□ -0.9
SYNE1-231	ENST00000498751	NBPF10	Q6P3W6	841 aa	Known RBP	9.43	□□□□□ -0.9
SYNE1-231	ENST00000498751	POTEB	Q6S5H4	581 aa		9.43	□□□□□ -0.9
SYNE1-231	ENST00000498751	RIC3	Q7Z5B4	369 aa		9.43	□□□□□ -0.9
SYNE1-231	ENST00000498751	NPM2	Q86SE8	214 aa	Known RBP	9.43	□□□□□ -0.9
SYNE1-231	ENST00000498751	NBPF15	Q8N660	670 aa		9.43	□□□□□ -0.9
SYNE1-231	ENST00000498751	XAGE3	Q8WTP9	111 aa		9.43	□□□□□ -0.9
SYNE1-231	ENST00000498751	COPRS	Q9NQ92	184 aa		9.43	□□□□□ -0.9
SYNE1-231	ENST00000498751	C9orf78	Q9NZ63	289 aa	Predicted RBP	9.43	□□□□□ -0.9
SYNE1-231	ENST00000498751	SPATA31A5	Q5VU36	1347 aa		9.42	□□□□□ -0.9
SYNE1-231	ENST00000498751	SPATA31A7	Q8IWB4	1347 aa		9.42	□□□□□ -0.9
SYNE1-231	ENST00000498751		H7C1W4	665 aa		9.42	□□□□□ -0.9
SYNE1-231	ENST00000498751	EXOC5	O00471	708 aa		9.42	□□□□□ -0.9
SYNE1-231	ENST00000498751	SRGAP3	O43295	1099 aa		9.42	□□□□□ -0.9
SYNE1-231	ENST00000498751	ERICH6	Q7L0X2	663 aa		9.42	□□□□□ -0.9
SYNE1-231	ENST00000498751	C16orf71	Q8IYS4	520 aa	Predicted RBP	9.42	□□□□□ -0.9
SYNE1-231	ENST00000498751	CCDC191	Q8NCU4	936 aa		9.42	□□□□□ -0.9
SYNE1-231	ENST00000498751	KIF2C	Q99661	725 aa		9.42	□□□□□ -0.9
SYNE1-231	ENST00000498751	STRN4	Q9NRL3	753 aa		9.42	□□□□□ -0.9
SYNE1-231	ENST00000498751	ATG3	Q9NT62	314 aa		9.42	□□□□□ -0.9
SYNE1-231	ENST00000498751	TMOD3	Q9NYL9	352 aa		9.42	□□□□□ -0.9
SYNE1-231	ENST00000498751	EXOC6B	Q9Y2D4	811 aa		9.42	□□□□□ -0.9
SYNE1-231	ENST00000498751	JCAD	Q9P266	1359 aa		9.41	□□□□□ -0.9
SYNE1-231	ENST00000498751	CWF19L2	Q2TBE0	894 aa	Known RBP	9.41	□□□□□ -0.9
SYNE1-231	ENST00000498751	CASC1	Q6TDU7	716 aa		9.41	□□□□□ -0.9
SYNE1-231	ENST00000498751	PI4K2B	Q8TCG2	481 aa		9.41	□□□□□ -0.9
SYNE1-231	ENST00000498751	PIGB	Q92521	554 aa		9.41	□□□□□ -0.9
SYNE1-231	ENST00000498751	SUCLG2	Q96I99	432 aa		9.41	□□□□□ -0.9
SYNE1-231	ENST00000498751	ISCA1	Q9BUE6	129 aa		9.41	□□□□□ -0.9
SYNE1-231	ENST00000498751	TJP1	Q07157	1748 aa		9.41	□□□□□ -0.9
SYNE1-231	ENST00000498751	SPATA31A6	Q5VVP1	1343 aa		9.4	□□□□□ -0.9
SYNE1-231	ENST00000498751	SURF6	O75683	361 aa	Known RBP	9.4	□□□□□ -0.9
SYNE1-231	ENST00000498751	REC8	O95072	547 aa		9.4	□□□□□ -0.9
SYNE1-231	ENST00000498751	RFX5	P48382	616 aa	Predicted RBP	9.4	□□□□□ -0.9
SYNE1-231	ENST00000498751	MYT1	Q01538	1121 aa		9.4	□□□□□ -0.9
SYNE1-231	ENST00000498751	FNBP4	Q8N3X1	1017 aa	Predicted RBP	9.4	□□□□□ -0.9
SYNE1-231	ENST00000498751	OTUD7A	Q8TE49	926 aa	Predicted RBP	9.4	□□□□□ -0.9
SYNE1-231	ENST00000498751	PLA2G12B	Q9BX93	195 aa		9.4	□□□□□ -0.9
SYNE1-231	ENST00000498751	USP26	Q9BXU7	913 aa		9.4	□□□□□ -0.9
SYNE1-231	ENST00000498751	FAM205C	A6NFA0	338 aa		9.39	□□□□□ -0.91
SYNE1-231	ENST00000498751	SMARCA5	O60264	1052 aa	Predicted RBP	9.39	□□□□□ -0.91
SYNE1-231	ENST00000498751	GLRX3	O76003	335 aa	Known RBP	9.39	□□□□□ -0.91
SYNE1-231	ENST00000498751	STARD3NL	O95772	234 aa		9.39	□□□□□ -0.91
SYNE1-231	ENST00000498751	MYL6B	P14649	208 aa		9.39	□□□□□ -0.91
SYNE1-231	ENST00000498751	MFAP1	P55081	439 aa	Known RBP	9.39	□□□□□ -0.91
SYNE1-231	ENST00000498751	DOK7	Q18PE1	504 aa		9.39	□□□□□ -0.91
SYNE1-231	ENST00000498751	CLASRP	Q8N2M8	674 aa	Known RBP	9.39	□□□□□ -0.91
SYNE1-231	ENST00000498751	DDX54	Q8TDD1	881 aa	Known RBP	9.39	□□□□□ -0.91
SYNE1-231	ENST00000498751	HS3ST6	Q96QI5	342 aa		9.39	□□□□□ -0.91
SYNE1-231	ENST00000498751	TBC1D2	Q9BYX2	928 aa		9.39	□□□□□ -0.91
SYNE1-231	ENST00000498751	BICC1	Q9H694	974 aa	Known RBP	9.39	□□□□□ -0.91

Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms