RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 NMRK2Q9NPI5 230 aa42.97■■■■■ 4.47
CBX4-203ENST00000494546 SALL2Q9Y467 1007 aaPredicted RBP42.97■■■■■ 4.47
CBX4-203ENST00000494546 RIC1Q4ADV7 1423 aa42.97■■■■■ 4.47
CBX4-203ENST00000494546 NLRP10Q86W26 655 aa42.96■■■■■ 4.47
CBX4-203ENST00000494546 FAM9BQ8IZU0 186 aa42.96■■■■■ 4.47
CBX4-203ENST00000494546 C7orf43Q8WVR3 580 aa42.96■■■■■ 4.47
CBX4-203ENST00000494546 RPGRQ92834 1020 aaKnown RBP42.96■■■■■ 4.47
CBX4-203ENST00000494546 KDM2BQ8NHM5 1336 aa42.95■■■■■ 4.47
CBX4-203ENST00000494546 FER1L6Q2WGJ9 1857 aa42.94■■■■■ 4.46
CBX4-203ENST00000494546 ANKRD36CQ5JPF3 1778 aa42.94■■■■■ 4.46
CBX4-203ENST00000494546 CCDC93Q567U6 631 aa42.94■■■■■ 4.46
CBX4-203ENST00000494546 ZC3H4Q9UPT8 1303 aaKnown RBP42.94■■■■■ 4.46
CBX4-203ENST00000494546 NCBP3Q53F19 620 aaKnown RBP42.93■■■■■ 4.46
CBX4-203ENST00000494546 TSPYL6Q8N831 410 aa42.92■■■■■ 4.46
CBX4-203ENST00000494546 LTBP3Q9NS15 1303 aa42.92■■■■■ 4.46
CBX4-203ENST00000494546 OLFM4Q6UX06 510 aa42.91■■■■■ 4.46
CBX4-203ENST00000494546 C3orf67Q6ZVT6 689 aa42.91■■■■■ 4.46
CBX4-203ENST00000494546 CCDC88AQ3V6T2 1871 aa42.9■■■■■ 4.46
CBX4-203ENST00000494546 ZNF428Q96B54 188 aa42.9■■■■■ 4.46
CBX4-203ENST00000494546 NLRP3Q96P20 1036 aa42.9■■■■■ 4.46
CBX4-203ENST00000494546 TRMT112Q9UI30 125 aaKnown RBP42.9■■■■■ 4.46
CBX4-203ENST00000494546 PHAXQ9H814 394 aaKnown RBP42.89■■■■■ 4.46
CBX4-203ENST00000494546 IL16Q14005 1332 aa42.89■■■■■ 4.46
CBX4-203ENST00000494546 RNF123Q5XPI4 1314 aa42.89■■■■■ 4.46
CBX4-203ENST00000494546 SLC10A5Q5PT55 438 aa42.88■■■■■ 4.45
CBX4-203ENST00000494546 CCDC30Q5VVM6 783 aa42.88■■■■■ 4.45
CBX4-203ENST00000494546 RBM17Q96I25 401 aaKnown RBP42.88■■■■■ 4.45
CBX4-203ENST00000494546 CHMP4AQ9BY43 222 aa42.88■■■■■ 4.45
CBX4-203ENST00000494546 HOXA10P31260 410 aaPredicted RBP42.87■■■■■ 4.45
CBX4-203ENST00000494546 ATP5J2-PTCD1G3V325 749 aa42.86■■■■■ 4.45
CBX4-203ENST00000494546 GOLGA2Q08379 1002 aa42.86■■■■■ 4.45
CBX4-203ENST00000494546 SYNE4Q8N205 404 aa42.86■■■■■ 4.45
CBX4-203ENST00000494546 TIAM2Q8IVF5 1701 aa42.85■■■■■ 4.45
CBX4-203ENST00000494546 RIC3Q7Z5B4 369 aa42.85■■■■■ 4.45
CBX4-203ENST00000494546 HCLS1P14317 486 aaPredicted RBP42.84■■■■■ 4.45
CBX4-203ENST00000494546 RTKN2Q8IZC4 609 aa42.84■■■■■ 4.45
CBX4-203ENST00000494546 SH3TC1Q8TE82 1336 aa42.84■■■■■ 4.45
CBX4-203ENST00000494546 ISCA1Q9BUE6 129 aa42.84■■■■■ 4.45
CBX4-203ENST00000494546 RRAGCQ9HB90 399 aa42.84■■■■■ 4.45
CBX4-203ENST00000494546 CRAMP1Q96RY5 1269 aa42.83■■■■■ 4.45
CBX4-203ENST00000494546 GLTPD2A6NH11 291 aa42.82■■■■■ 4.45
CBX4-203ENST00000494546 FKBP4Q02790 459 aaKnown RBP eCLIP42.82■■■■■ 4.455e-6■■■□□ 17
CBX4-203ENST00000494546 WDR63Q8IWG1 891 aa42.81■■■■■ 4.44
CBX4-203ENST00000494546 TWISTNBQ3B726 338 aaPredicted RBP42.8■■■■■ 4.44
CBX4-203ENST00000494546 TOMM70O94826 608 aa42.79■■■■■ 4.44
CBX4-203ENST00000494546 C16orf71Q8IYS4 520 aaPredicted RBP42.79■■■■■ 4.44
CBX4-203ENST00000494546 TCERG1O14776 1098 aaKnown RBP42.78■■■■■ 4.44
CBX4-203ENST00000494546 ZNF277Q9NRM2 450 aaPredicted RBP42.78■■■■■ 4.44
CBX4-203ENST00000494546 FANCIQ9NVI1 1328 aa42.77■■■■■ 4.44
CBX4-203ENST00000494546 PPEF1O14829 653 aaPredicted RBP42.77■■■■■ 4.44
CBX4-203ENST00000494546 DPY19L2Q6NUT2 758 aa42.77■■■■■ 4.44
CBX4-203ENST00000494546 DICER1Q9UPY3 1922 aaKnown RBP42.76■■■■■ 4.44
CBX4-203ENST00000494546 STK31Q9BXU1 1019 aa42.76■■■■■ 4.44
CBX4-203ENST00000494546 CC2D2BQ6DHV5 1058 aa42.75■■■■■ 4.43
CBX4-203ENST00000494546 FAM89AQ96GI7 184 aa42.75■■■■■ 4.43
CBX4-203ENST00000494546 DDX58O95786 925 aaKnown RBP42.74■■■■■ 4.43
CBX4-203ENST00000494546 MYD88Q99836 296 aa42.74■■■■■ 4.43
CBX4-203ENST00000494546 TRIM28Q13263 835 aaKnown RBP42.73■■■■■ 4.43
CBX4-203ENST00000494546 ABCC4O15439 1325 aa42.72■■■■■ 4.43
CBX4-203ENST00000494546 RTL5Q5HYW3 569 aaPredicted RBP42.72■■■■■ 4.43
CBX4-203ENST00000494546 SLC51AQ86UW1 340 aa42.71■■■■■ 4.43
CBX4-203ENST00000494546 PSMD1Q99460 953 aa42.69■■■■■ 4.42
CBX4-203ENST00000494546 LAMB2P55268 1798 aa42.69■■■■■ 4.42
CBX4-203ENST00000494546 SNED1Q8TER0 1413 aa42.69■■■■■ 4.42
CBX4-203ENST00000494546 VEGFAP15692 232 aaPredicted RBP42.68■■■■■ 4.42
CBX4-203ENST00000494546 IARSP41252 1262 aaKnown RBP42.68■■■■■ 4.42
CBX4-203ENST00000494546 DDX46Q7L014 1031 aaKnown RBP42.68■■■■■ 4.42
CBX4-203ENST00000494546 TMX4Q9H1E5 349 aaPredicted RBP42.68■■■■■ 4.42
CBX4-203ENST00000494546 RBM46Q8TBY0 533 aaKnown RBP42.67■■■■■ 4.42
CBX4-203ENST00000494546 MAP3K2Q9Y2U5 619 aa42.67■■■■■ 4.42
CBX4-203ENST00000494546 HSPA6P17066 643 aa42.66■■■■■ 4.42
CBX4-203ENST00000494546 GRIPAP1Q4V328 841 aa42.66■■■■■ 4.42
CBX4-203ENST00000494546 METTL22Q9BUU2 404 aaPredicted RBP42.66■■■■■ 4.42
CBX4-203ENST00000494546 SPINK5Q9NQ38 1064 aaPredicted RBP42.66■■■■■ 4.42
CBX4-203ENST00000494546 ATP6V0A2Q9Y487 856 aa42.66■■■■■ 4.42
CBX4-203ENST00000494546 SLC4A2P04920 1241 aa42.65■■■■■ 4.42
CBX4-203ENST00000494546 EXOSC9Q06265 439 aaKnown RBP42.65■■■■■ 4.42
CBX4-203ENST00000494546 IRS4O14654 1257 aaPredicted RBP42.64■■■■■ 4.42
CBX4-203ENST00000494546 DDNO94850 711 aaPredicted RBP42.64■■■■■ 4.42
CBX4-203ENST00000494546 BBOX1O75936 387 aa42.63■■■■■ 4.41
CBX4-203ENST00000494546 KSR2Q6VAB6 950 aa42.63■■■■■ 4.41
CBX4-203ENST00000494546 G2E3Q7L622 706 aa42.63■■■■■ 4.41
CBX4-203ENST00000494546 ZBTB38Q8NAP3 1195 aaPredicted RBP42.63■■■■■ 4.41
CBX4-203ENST00000494546 CCDC191Q8NCU4 936 aa42.63■■■■■ 4.41
CBX4-203ENST00000494546 DDX60Q8IY21 1712 aaKnown RBP42.63■■■■■ 4.41
CBX4-203ENST00000494546 PI4KAP2A4QPH2 592 aa42.62■■■■■ 4.41
CBX4-203ENST00000494546 PI4KAP1Q8N8J0 262 aa42.62■■■■■ 4.41
CBX4-203ENST00000494546 GRAPQ13588 217 aa42.61■■■■■ 4.41
CBX4-203ENST00000494546 GRAPLQ8TC17 118 aaPredicted RBP42.61■■■■■ 4.41
CBX4-203ENST00000494546 MYH16Q9H6N6 1097 aa42.61■■■■■ 4.41
CBX4-203ENST00000494546 CWC25Q9NXE8 425 aaPredicted RBP42.61■■■■■ 4.41
CBX4-203ENST00000494546 VAMP4O75379 141 aa42.6■■■■■ 4.41
CBX4-203ENST00000494546 POTECB2RU33 542 aa42.59■■■■■ 4.41
CBX4-203ENST00000494546 SF3B3Q15393 1217 aaKnown RBP42.59■■■■■ 4.41
CBX4-203ENST00000494546 WDR90Q96KV7 1748 aa42.59■■■■■ 4.41
CBX4-203ENST00000494546 JDP2Q8WYK2 163 aa42.58■■■■■ 4.41
CBX4-203ENST00000494546 ZNF541Q9H0D2 1346 aa42.57■■■■■ 4.41
CBX4-203ENST00000494546 SP8Q8IXZ3 490 aa42.57■■■■■ 4.41
CBX4-203ENST00000494546 JARID2Q92833 1246 aaPredicted RBP42.56■■■■■ 4.4
CBX4-203ENST00000494546 PCCAP05165 728 aaPredicted RBP42.55■■■■■ 4.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms