RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 CEP85Q6P2H3 762 aa12.06□□□□□ -0.48
USP54-214ENST00000492357 PLA2G12BQ9BX93 195 aa12.06□□□□□ -0.48
USP54-214ENST00000492357 ZBTB3Q9H5J0 574 aa12.06□□□□□ -0.48
USP54-214ENST00000492357 LRRC4BQ9NT99 713 aa12.06□□□□□ -0.48
USP54-214ENST00000492357 COL24A1Q17RW2 1714 aa12.06□□□□□ -0.48
USP54-214ENST00000492357 RIC1Q4ADV7 1423 aa12.05□□□□□ -0.48
USP54-214ENST00000492357 GNPATO15228 680 aa12.05□□□□□ -0.48
USP54-214ENST00000492357 PIP4K2AP48426 406 aaPredicted RBP12.05□□□□□ -0.48
USP54-214ENST00000492357 CWF19L2Q2TBE0 894 aaKnown RBP12.05□□□□□ -0.48
USP54-214ENST00000492357 HSP90AB4PQ58FF6 505 aa12.05□□□□□ -0.48
USP54-214ENST00000492357 TRAPPC3LQ5T215 181 aa12.05□□□□□ -0.48
USP54-214ENST00000492357 B4GALNT3Q6L9W6 998 aa12.05□□□□□ -0.48
USP54-214ENST00000492357 ZBTB38Q8NAP3 1195 aaPredicted RBP12.05□□□□□ -0.48
USP54-214ENST00000492357 SSH3Q8TE77 659 aa12.05□□□□□ -0.48
USP54-214ENST00000492357 LAMB2P55268 1798 aa12.05□□□□□ -0.48
USP54-214ENST00000492357 ZPR1O75312 459 aa12.04□□□□□ -0.48
USP54-214ENST00000492357 NBPF7P0C2Y1 421 aaPredicted RBP12.04□□□□□ -0.48
USP54-214ENST00000492357 CASP7P55210 303 aa12.04□□□□□ -0.48
USP54-214ENST00000492357 RABL6Q3YEC7 729 aaPredicted RBP12.04□□□□□ -0.48
USP54-214ENST00000492357 PPP1R42Q7Z4L9 355 aa12.04□□□□□ -0.48
USP54-214ENST00000492357 NLRP10Q86W26 655 aa12.04□□□□□ -0.48
USP54-214ENST00000492357 CAMKK2Q96RR4 588 aa12.04□□□□□ -0.48
USP54-214ENST00000492357 DCTPP1Q9H773 170 aa12.04□□□□□ -0.48
USP54-214ENST00000492357 ZNF330Q9Y3S2 320 aaPredicted RBP12.04□□□□□ -0.48
USP54-214ENST00000492357 USP42Q9H9J4 1324 aaKnown RBP12.04□□□□□ -0.48
USP54-214ENST00000492357 POLA2Q14181 598 aa12.03□□□□□ -0.48
USP54-214ENST00000492357 PROM2Q8N271 834 aa12.03□□□□□ -0.48
USP54-214ENST00000492357 AKT1S1Q96B36 256 aa12.03□□□□□ -0.48
USP54-214ENST00000492357 NYXQ9GZU5 481 aa12.03□□□□□ -0.48
USP54-214ENST00000492357 FBXO3Q9UK99 471 aa12.03□□□□□ -0.48
USP54-214ENST00000492357 TBC1D2BQ9UPU7 963 aa12.03□□□□□ -0.48
USP54-214ENST00000492357 LRRFIP2Q9Y608 721 aaKnown RBP12.03□□□□□ -0.48
USP54-214ENST00000492357 RFC4P35249 363 aa12.02□□□□□ -0.49
USP54-214ENST00000492357 ARHGEF1Q92888 912 aaKnown RBP12.02□□□□□ -0.49
USP54-214ENST00000492357 SH3TC1Q8TE82 1336 aa12.02□□□□□ -0.49
USP54-214ENST00000492357 MYH3P11055 1940 aa12.01□□□□□ -0.49
USP54-214ENST00000492357 RAB11FIP3O75154 756 aa12.01□□□□□ -0.49
USP54-214ENST00000492357 HLFQ16534 295 aa12.01□□□□□ -0.49
USP54-214ENST00000492357 SIRT2Q8IXJ6 389 aa12.01□□□□□ -0.49
USP54-214ENST00000492357 NOP58Q9Y2X3 529 aaKnown RBP12.01□□□□□ -0.49
USP54-214ENST00000492357 RTL9Q8NET4 1388 aa12.01□□□□□ -0.49
USP54-214ENST00000492357 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12□□□□□ -0.49
USP54-214ENST00000492357 ATP5J2-PTCD1G3V325 749 aa12□□□□□ -0.49
USP54-214ENST00000492357 IGHDP01880 384 aa12□□□□□ -0.49
USP54-214ENST00000492357 UBE3BQ7Z3V4 1068 aa12□□□□□ -0.49
USP54-214ENST00000492357 ERC1Q8IUD2 1116 aa12□□□□□ -0.49
USP54-214ENST00000492357 ARXQ96QS3 562 aa12□□□□□ -0.49
USP54-214ENST00000492357 UTP14AQ9BVJ6 771 aaKnown RBP12□□□□□ -0.49
USP54-214ENST00000492357 CARMIL3Q8ND23 1372 aa12□□□□□ -0.49
USP54-214ENST00000492357 SRGAP3O43295 1099 aa11.99□□□□□ -0.49
USP54-214ENST00000492357 CSF1RP07333 972 aa11.99□□□□□ -0.49
USP54-214ENST00000492357 SLC10A5Q5PT55 438 aa11.99□□□□□ -0.49
USP54-214ENST00000492357 NLGN1Q8N2Q7 840 aa11.99□□□□□ -0.49
USP54-214ENST00000492357 KAZALD1Q96I82 304 aa11.99□□□□□ -0.49
USP54-214ENST00000492357 SUCLG2Q96I99 432 aa11.99□□□□□ -0.49
USP54-214ENST00000492357 SETDB2Q96T68 719 aa11.99□□□□□ -0.49
USP54-214ENST00000492357 COPRSQ9NQ92 184 aa11.99□□□□□ -0.49
USP54-214ENST00000492357 ZBTB47Q9UFB7 747 aaPredicted RBP11.99□□□□□ -0.49
USP54-214ENST00000492357 TRMT112Q9UI30 125 aaKnown RBP11.99□□□□□ -0.49
USP54-214ENST00000492357 NIP7Q9Y221 180 aaKnown RBP eCLIP11.99□□□□□ -0.49
USP54-214ENST00000492357 UBN2Q6ZU65 1347 aa11.99□□□□□ -0.49
USP54-214ENST00000492357 PDE8AO60658 829 aa11.98□□□□□ -0.49
USP54-214ENST00000492357 NTSR2O95665 410 aa11.98□□□□□ -0.49
USP54-214ENST00000492357 NUCB1Q02818 461 aa11.98□□□□□ -0.49
USP54-214ENST00000492357 USPL1Q5W0Q7 1092 aa11.98□□□□□ -0.49
USP54-214ENST00000492357 TPTE2Q6XPS3 522 aa11.98□□□□□ -0.49
USP54-214ENST00000492357 BICC1Q9H694 974 aaKnown RBP11.98□□□□□ -0.49
USP54-214ENST00000492357 C1orf115Q9H7X2 142 aa11.98□□□□□ -0.49
USP54-214ENST00000492357 BCL2L12Q9HB09 334 aa11.98□□□□□ -0.49
USP54-214ENST00000492357 STK32BQ9NY57 414 aa11.98□□□□□ -0.49
USP54-214ENST00000492357 TFCP2L1Q9NZI6 479 aa11.98□□□□□ -0.49
USP54-214ENST00000492357 TUBGCP6Q96RT7 1819 aa11.97□□□□□ -0.49
USP54-214ENST00000492357 KCNQ4P56696 695 aa11.97□□□□□ -0.49
USP54-214ENST00000492357 FOXO4P98177 505 aa11.97□□□□□ -0.49
USP54-214ENST00000492357 SLC15A2Q16348 729 aa11.97□□□□□ -0.49
USP54-214ENST00000492357 SLC16A10Q8TF71 515 aa11.97□□□□□ -0.49
USP54-214ENST00000492357 DDX60Q8IY21 1712 aaKnown RBP11.97□□□□□ -0.49
USP54-214ENST00000492357 PNMA6EA0A0J9YXQ4 647 aa11.96□□□□□ -0.49
USP54-214ENST00000492357 IRS4O14654 1257 aaPredicted RBP11.96□□□□□ -0.49
USP54-214ENST00000492357 CIAO1O76071 339 aa11.96□□□□□ -0.49
USP54-214ENST00000492357 GYS1P13807 737 aa11.96□□□□□ -0.49
USP54-214ENST00000492357 CHD1LQ86WJ1 897 aa11.96□□□□□ -0.49
USP54-214ENST00000492357 KIF1BPQ96EK5 621 aa11.96□□□□□ -0.49
USP54-214ENST00000492357 NRXN2Q9P2S2 1712 aa11.96□□□□□ -0.49
USP54-214ENST00000492357 GPTP24298 496 aa11.95□□□□□ -0.5
USP54-214ENST00000492357 TM4SF1P30408 202 aa11.95□□□□□ -0.5
USP54-214ENST00000492357 CTSWP56202 376 aa11.95□□□□□ -0.5
USP54-214ENST00000492357 EN1Q05925 392 aaPredicted RBP11.95□□□□□ -0.5
USP54-214ENST00000492357 SF3B3Q15393 1217 aaKnown RBP11.95□□□□□ -0.5
USP54-214ENST00000492357 EZH2Q15910 746 aaKnown RBP11.95□□□□□ -0.5
USP54-214ENST00000492357 ZNF827Q17R98 1081 aa11.95□□□□□ -0.5
USP54-214ENST00000492357 SUSD4Q5VX71 490 aa11.95□□□□□ -0.5
USP54-214ENST00000492357 FAM89AQ96GI7 184 aa11.95□□□□□ -0.5
USP54-214ENST00000492357 LRRCC1Q9C099 1032 aa11.95□□□□□ -0.5
USP54-214ENST00000492357 ATF5Q9Y2D1 282 aaPredicted RBP11.95□□□□□ -0.5
USP54-214ENST00000492357 LRP5O75197 1615 aa11.95□□□□□ -0.5
USP54-214ENST00000492357 PNPLA7Q6ZV29 1317 aa11.94□□□□□ -0.5
USP54-214ENST00000492357 RFX5P48382 616 aaPredicted RBP11.94□□□□□ -0.5
USP54-214ENST00000492357 C1QBPQ07021 282 aaKnown RBP11.94□□□□□ -0.5
USP54-214ENST00000492357 CCDC57Q2TAC2 916 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms