RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 CCDC136Q96JN2 1154 aa8.75□□□□□ -1.01
SYNE1-229ENST00000490866 LARP6Q9BRS8 491 aaKnown RBP8.75□□□□□ -1.01
SYNE1-229ENST00000490866 ASAP1Q9ULH1 1129 aa8.75□□□□□ -1.01
SYNE1-229ENST00000490866 USP16Q9Y5T5 823 aa8.75□□□□□ -1.01
SYNE1-229ENST00000490866 ABCC4O15439 1325 aa8.75□□□□□ -1.01
SYNE1-229ENST00000490866 ZNF831Q5JPB2 1677 aa8.75□□□□□ -1.01
SYNE1-229ENST00000490866 RGS12O14924 1447 aa8.74□□□□□ -1.01
SYNE1-229ENST00000490866 FAM205CA6NFA0 338 aa8.74□□□□□ -1.01
SYNE1-229ENST00000490866 CLEC4GQ6UXB4 293 aa8.74□□□□□ -1.01
SYNE1-229ENST00000490866 KIF6Q6ZMV9 814 aa8.74□□□□□ -1.01
SYNE1-229ENST00000490866 ITPRIPQ8IWB1 547 aa8.74□□□□□ -1.01
SYNE1-229ENST00000490866 LINS1Q8NG48 757 aa8.74□□□□□ -1.01
SYNE1-229ENST00000490866 DNAAF4Q8WXU2 420 aa8.74□□□□□ -1.01
SYNE1-229ENST00000490866 CLUAP1Q96AJ1 413 aa8.74□□□□□ -1.01
SYNE1-229ENST00000490866 SRCIN1Q9C0H9 1055 aa8.74□□□□□ -1.01
SYNE1-229ENST00000490866 CHPF2Q9P2E5 772 aa8.74□□□□□ -1.01
SYNE1-229ENST00000490866 SHANK3Q9BYB0 1731 aa8.74□□□□□ -1.01
SYNE1-229ENST00000490866 GLI3P10071 1580 aa8.73□□□□□ -1.01
SYNE1-229ENST00000490866 ITGB4P16144 1822 aa8.73□□□□□ -1.01
SYNE1-229ENST00000490866 PXDNLA1KZ92 1463 aa8.73□□□□□ -1.01
SYNE1-229ENST00000490866 ZBTB7BO15156 539 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-229ENST00000490866 KCNQ3O43525 872 aa8.73□□□□□ -1.01
SYNE1-229ENST00000490866 PLIN1O60240 522 aa8.73□□□□□ -1.01
SYNE1-229ENST00000490866 HMMRO75330 724 aa8.73□□□□□ -1.01
SYNE1-229ENST00000490866 CYP19A1P11511 503 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-229ENST00000490866 TRIM28Q13263 835 aaKnown RBP8.73□□□□□ -1.01
SYNE1-229ENST00000490866 FLAD1Q8NFF5 587 aa8.73□□□□□ -1.01
SYNE1-229ENST00000490866 HS3ST6Q96QI5 342 aa8.73□□□□□ -1.01
SYNE1-229ENST00000490866 BCL2L13Q9BXK5 485 aa8.73□□□□□ -1.01
SYNE1-229ENST00000490866 ZNF652Q9Y2D9 606 aa8.73□□□□□ -1.01
SYNE1-229ENST00000490866 PALLDQ8WX93 1383 aa8.73□□□□□ -1.01
SYNE1-229ENST00000490866 UBR2Q8IWV8 1755 aa8.72□□□□□ -1.01
SYNE1-229ENST00000490866 PI4KAP2A4QPH2 592 aa8.72□□□□□ -1.01
SYNE1-229ENST00000490866 PSDA5PKW4 1024 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-229ENST00000490866 SF3B2Q13435 895 aaKnown RBP8.72□□□□□ -1.01
SYNE1-229ENST00000490866 PDIA6Q15084 440 aa8.72□□□□□ -1.01
SYNE1-229ENST00000490866 KRT24Q2M2I5 525 aa8.72□□□□□ -1.01
SYNE1-229ENST00000490866 COPS6Q7L5N1 327 aa8.72□□□□□ -1.01
SYNE1-229ENST00000490866 PI4KAP1Q8N8J0 262 aa8.72□□□□□ -1.01
SYNE1-229ENST00000490866 ZBTB40Q9NUA8 1239 aa8.72□□□□□ -1.01
SYNE1-229ENST00000490866 COG6Q9Y2V7 657 aa8.72□□□□□ -1.01
SYNE1-229ENST00000490866 ATP10DQ9P241 1426 aa8.71□□□□□ -1.01
SYNE1-229ENST00000490866 GNAI2P04899 355 aa8.71□□□□□ -1.02
SYNE1-229ENST00000490866 HDAC1Q13547 482 aaPredicted RBP8.71□□□□□ -1.02
SYNE1-229ENST00000490866 SLC4A10Q6U841 1118 aa8.71□□□□□ -1.02
SYNE1-229ENST00000490866 CENPQQ7L2Z9 268 aaPredicted RBP8.71□□□□□ -1.02
SYNE1-229ENST00000490866 CCDC191Q8NCU4 936 aa8.71□□□□□ -1.02
SYNE1-229ENST00000490866 GCC1Q96CN9 775 aa8.71□□□□□ -1.02
SYNE1-229ENST00000490866 ACSBG1Q96GR2 724 aa8.71□□□□□ -1.02
SYNE1-229ENST00000490866 AK7Q96M32 723 aa8.71□□□□□ -1.02
SYNE1-229ENST00000490866 METTL22Q9BUU2 404 aaPredicted RBP8.71□□□□□ -1.02
SYNE1-229ENST00000490866 CCDC87Q9NVE4 849 aa8.71□□□□□ -1.02
SYNE1-229ENST00000490866 CNTNAP4Q9C0A0 1308 aa8.71□□□□□ -1.02
SYNE1-229ENST00000490866 EIF5BO60841 1220 aaKnown RBP8.7□□□□□ -1.02
SYNE1-229ENST00000490866 RPS6KA4O75676 772 aa8.7□□□□□ -1.02
SYNE1-229ENST00000490866 MYL6BP14649 208 aa8.7□□□□□ -1.02
SYNE1-229ENST00000490866 EIF5P55010 431 aaKnown RBP8.7□□□□□ -1.02
SYNE1-229ENST00000490866 HSP90AB4PQ58FF6 505 aa8.7□□□□□ -1.02
SYNE1-229ENST00000490866 TMEM57Q8N5G2 664 aa8.7□□□□□ -1.02
SYNE1-229ENST00000490866 EXOC6Q8TAG9 804 aa8.7□□□□□ -1.02
SYNE1-229ENST00000490866 OXER1Q8TDS5 423 aa8.7□□□□□ -1.02
SYNE1-229ENST00000490866 PANK1Q8TE04 598 aa8.7□□□□□ -1.02
SYNE1-229ENST00000490866 CRBNQ96SW2 442 aa8.7□□□□□ -1.02
SYNE1-229ENST00000490866 C9orf78Q9NZ63 289 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-229ENST00000490866 CCNL1Q9UK58 526 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-229ENST00000490866 MAP3K2Q9Y2U5 619 aa8.7□□□□□ -1.02
SYNE1-229ENST00000490866 KCPQ6ZWJ8 1503 aa8.7□□□□□ -1.02
SYNE1-229ENST00000490866 PAPPAQ13219 1627 aa8.69□□□□□ -1.02
SYNE1-229ENST00000490866 KCNQ2O43526 872 aa8.69□□□□□ -1.02
SYNE1-229ENST00000490866 A1BGP04217 495 aa8.69□□□□□ -1.02
SYNE1-229ENST00000490866 UBTFL1P0CB47 393 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-229ENST00000490866 TCIRG1Q13488 830 aa8.69□□□□□ -1.02
SYNE1-229ENST00000490866 PARP10Q53GL7 1025 aa8.69□□□□□ -1.02
SYNE1-229ENST00000490866 TRAPPC3LQ5T215 181 aa8.69□□□□□ -1.02
SYNE1-229ENST00000490866 BEND3Q5T5X7 828 aa8.69□□□□□ -1.02
SYNE1-229ENST00000490866 GIGYF2Q6Y7W6 1299 aaKnown RBP8.69□□□□□ -1.02
SYNE1-229ENST00000490866 DNAJC10Q8IXB1 793 aa8.69□□□□□ -1.02
SYNE1-229ENST00000490866 ZNF687Q8N1G0 1237 aa8.69□□□□□ -1.02
SYNE1-229ENST00000490866 XAGE3Q8WTP9 111 aa8.69□□□□□ -1.02
SYNE1-229ENST00000490866 NECTIN2Q92692 538 aa8.69□□□□□ -1.02
SYNE1-229ENST00000490866 PHAXQ9H814 394 aaKnown RBP8.69□□□□□ -1.02
SYNE1-229ENST00000490866 RTCBQ9Y3I0 505 aaKnown RBP8.69□□□□□ -1.02
SYNE1-229ENST00000490866 CICQ96RK0 1608 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-229ENST00000490866 ZPR1O75312 459 aa8.68□□□□□ -1.02
SYNE1-229ENST00000490866 CRKLP46109 303 aaKnown RBP8.68□□□□□ -1.02
SYNE1-229ENST00000490866 AIMP1Q12904 312 aaKnown RBP8.68□□□□□ -1.02
SYNE1-229ENST00000490866 VARS2Q5ST30 1063 aaKnown RBP8.68□□□□□ -1.02
SYNE1-229ENST00000490866 LRP10Q7Z4F1 713 aa8.68□□□□□ -1.02
SYNE1-229ENST00000490866 CWC25Q9NXE8 425 aaPredicted RBP8.68□□□□□ -1.02
SYNE1-229ENST00000490866 UTYO14607 1347 aa8.68□□□□□ -1.02
SYNE1-229ENST00000490866 MAP3K15Q6ZN16 1313 aa8.68□□□□□ -1.02
SYNE1-229ENST00000490866 NHSQ6T4R5 1651 aa8.68□□□□□ -1.02
SYNE1-229ENST00000490866 LAMB4A4D0S4 1761 aa8.68□□□□□ -1.02
SYNE1-229ENST00000490866 POTEB3A0JP26 581 aa8.67□□□□□ -1.02
SYNE1-229ENST00000490866 NBPF26B4DH59 902 aa8.67□□□□□ -1.02
SYNE1-229ENST00000490866 TCERG1O14776 1098 aaKnown RBP8.67□□□□□ -1.02
SYNE1-229ENST00000490866 TRIM37O94972 964 aa8.67□□□□□ -1.02
SYNE1-229ENST00000490866 APBA3O96018 575 aa8.67□□□□□ -1.02
SYNE1-229ENST00000490866 NUDT7P0C024 238 aa8.67□□□□□ -1.02
SYNE1-229ENST00000490866 RLBP1P12271 317 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms