RNA–Protein interactions for RNA: ENST00000489892.1

TRIM40-208, Transcript of tripartite motif containing 40, humanhuman

TSL 3

Gene TRIM40, Length 941 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-208ENST00000489892 ARXQ96QS3 562 aa14.52□□□□□ -0.09
TRIM40-208ENST00000489892 FHDC1Q9C0D6 1143 aaPredicted RBP14.52□□□□□ -0.09
TRIM40-208ENST00000489892 NOP58Q9Y2X3 529 aaKnown RBP14.52□□□□□ -0.09
TRIM40-208ENST00000489892 RPS6KA4O75676 772 aa14.51□□□□□ -0.09
TRIM40-208ENST00000489892 IGKV5-2P06315 115 aa14.51□□□□□ -0.09
TRIM40-208ENST00000489892 CWF19L2Q2TBE0 894 aaKnown RBP14.51□□□□□ -0.09
TRIM40-208ENST00000489892 COL13A1Q5TAT6 717 aaPredicted RBP14.51□□□□□ -0.09
TRIM40-208ENST00000489892 CLEC4GQ6UXB4 293 aa14.51□□□□□ -0.09
TRIM40-208ENST00000489892 SMC5Q8IY18 1101 aa14.51□□□□□ -0.09
TRIM40-208ENST00000489892 LINC00116Q8NCU8 138 aa14.51□□□□□ -0.09
TRIM40-208ENST00000489892 AK7Q96M32 723 aa14.51□□□□□ -0.09
TRIM40-208ENST00000489892 C1orf115Q9H7X2 142 aa14.51□□□□□ -0.09
TRIM40-208ENST00000489892 RTCBQ9Y3I0 505 aaKnown RBP14.51□□□□□ -0.09
TRIM40-208ENST00000489892 LRRFIP2Q9Y608 721 aaKnown RBP14.51□□□□□ -0.09
TRIM40-208ENST00000489892 AFDNP55196 1824 aaKnown RBP14.5□□□□□ -0.09
TRIM40-208ENST00000489892 IGHDP01880 384 aa14.5□□□□□ -0.09
TRIM40-208ENST00000489892 HSPA6P17066 643 aa14.5□□□□□ -0.09
TRIM40-208ENST00000489892 ATP8B2P98198 1209 aa14.5□□□□□ -0.09
TRIM40-208ENST00000489892 MTX1Q13505 466 aa14.5□□□□□ -0.09
TRIM40-208ENST00000489892 PARP10Q53GL7 1025 aa14.5□□□□□ -0.09
TRIM40-208ENST00000489892 HSP90AB4PQ58FF6 505 aa14.5□□□□□ -0.09
TRIM40-208ENST00000489892 IPO9Q96P70 1041 aaKnown RBP14.5□□□□□ -0.09
TRIM40-208ENST00000489892 SYT17Q9BSW7 474 aa14.5□□□□□ -0.09
TRIM40-208ENST00000489892 ISCA1Q9BUE6 129 aa14.5□□□□□ -0.09
TRIM40-208ENST00000489892 NBPF7P0C2Y1 421 aaPredicted RBP14.49□□□□□ -0.09
TRIM40-208ENST00000489892 TAF1LQ8IZX4 1826 aa14.49□□□□□ -0.09
TRIM40-208ENST00000489892 ANKRD36CQ5JPF3 1778 aa14.49□□□□□ -0.09
TRIM40-208ENST00000489892 MYH14Q7Z406 1995 aaKnown RBP14.48□□□□□ -0.09
TRIM40-208ENST00000489892 GNPATO15228 680 aa14.48□□□□□ -0.09
TRIM40-208ENST00000489892 DCTPP1Q9H773 170 aa14.48□□□□□ -0.09
TRIM40-208ENST00000489892 C4BP0C0L5 1744 aa14.48□□□□□ -0.09
TRIM40-208ENST00000489892 QSER1Q2KHR3 1735 aa14.48□□□□□ -0.09
TRIM40-208ENST00000489892 ATP5J2-PTCD1G3V325 749 aa14.47□□□□□ -0.09
TRIM40-208ENST00000489892 ZPR1O75312 459 aa14.47□□□□□ -0.09
TRIM40-208ENST00000489892 ZNF827Q17R98 1081 aa14.47□□□□□ -0.09
TRIM40-208ENST00000489892 TBC1D2BQ9UPU7 963 aa14.47□□□□□ -0.09
TRIM40-208ENST00000489892 H7C1W4 665 aa14.46□□□□□ -0.09
TRIM40-208ENST00000489892 CAMTA2O94983 1202 aa14.46□□□□□ -0.09
TRIM40-208ENST00000489892 PCCAP05165 728 aaPredicted RBP14.46□□□□□ -0.09
TRIM40-208ENST00000489892 SSFA2P28290 1259 aa14.46□□□□□ -0.09
TRIM40-208ENST00000489892 UBE3BQ7Z3V4 1068 aa14.46□□□□□ -0.09
TRIM40-208ENST00000489892 KLHL34Q8N239 644 aa14.46□□□□□ -0.09
TRIM40-208ENST00000489892 ZBTB38Q8NAP3 1195 aaPredicted RBP14.46□□□□□ -0.09
TRIM40-208ENST00000489892 SSH3Q8TE77 659 aa14.46□□□□□ -0.09
TRIM40-208ENST00000489892 DDRGK1Q96HY6 314 aa14.46□□□□□ -0.09
TRIM40-208ENST00000489892 SGIP1Q9BQI5 828 aa14.46□□□□□ -0.09
TRIM40-208ENST00000489892 BACH2Q9BYV9 841 aa14.46□□□□□ -0.09
TRIM40-208ENST00000489892 NARFQ9UHQ1 456 aa14.46□□□□□ -0.09
TRIM40-208ENST00000489892 NUP98P52948 1817 aa14.45□□□□□ -0.1
TRIM40-208ENST00000489892 CDHR2Q9BYE9 1310 aa14.45□□□□□ -0.1
TRIM40-208ENST00000489892 BCORQ6W2J9 1755 aa14.45□□□□□ -0.1
TRIM40-208ENST00000489892 SRGAP3O43295 1099 aa14.45□□□□□ -0.1
TRIM40-208ENST00000489892 RAB11FIP3O75154 756 aa14.45□□□□□ -0.1
TRIM40-208ENST00000489892 POLD1P28340 1107 aa14.45□□□□□ -0.1
TRIM40-208ENST00000489892 NUCB1Q02818 461 aa14.45□□□□□ -0.1
TRIM40-208ENST00000489892 TRAPPC3LQ5T215 181 aa14.45□□□□□ -0.1
TRIM40-208ENST00000489892 PPP1R42Q7Z4L9 355 aa14.45□□□□□ -0.1
TRIM40-208ENST00000489892 NLRP10Q86W26 655 aa14.45□□□□□ -0.1
TRIM40-208ENST00000489892 ERC1Q8IUD2 1116 aa14.45□□□□□ -0.1
TRIM40-208ENST00000489892 SIRT2Q8IXJ6 389 aa14.45□□□□□ -0.1
TRIM40-208ENST00000489892 FLAD1Q8NFF5 587 aa14.45□□□□□ -0.1
TRIM40-208ENST00000489892 LRRC4BQ9NT99 713 aa14.45□□□□□ -0.1
TRIM40-208ENST00000489892 SCN7AQ01118 1682 aa14.45□□□□□ -0.1
TRIM40-208ENST00000489892 TUBGCP6Q96RT7 1819 aa14.44□□□□□ -0.1
TRIM40-208ENST00000489892 PDE4AP27815 886 aa14.44□□□□□ -0.1
TRIM40-208ENST00000489892 RFC4P35249 363 aa14.44□□□□□ -0.1
TRIM40-208ENST00000489892 POLA2Q14181 598 aa14.44□□□□□ -0.1
TRIM40-208ENST00000489892 ZNF34Q8IZ26 560 aa14.44□□□□□ -0.1
TRIM40-208ENST00000489892 TFCP2L1Q9NZI6 479 aa14.44□□□□□ -0.1
TRIM40-208ENST00000489892 GOLGB1Q14789 3259 aaKnown RBP14.44□□□□□ -0.1
TRIM40-208ENST00000489892 HLFQ16534 295 aa14.43□□□□□ -0.1
TRIM40-208ENST00000489892 RABL6Q3YEC7 729 aaPredicted RBP14.43□□□□□ -0.1
TRIM40-208ENST00000489892 CHD1LQ86WJ1 897 aa14.43□□□□□ -0.1
TRIM40-208ENST00000489892 SLC16A10Q8TF71 515 aa14.43□□□□□ -0.1
TRIM40-208ENST00000489892 SUCLG2Q96I99 432 aa14.43□□□□□ -0.1
TRIM40-208ENST00000489892 PLA2G12BQ9BX93 195 aa14.43□□□□□ -0.1
TRIM40-208ENST00000489892 PDZRN3Q9UPQ7 1066 aa14.43□□□□□ -0.1
TRIM40-208ENST00000489892 CASP7P55210 303 aa14.42□□□□□ -0.1
TRIM40-208ENST00000489892 GPR162Q16538 588 aa14.42□□□□□ -0.1
TRIM40-208ENST00000489892 ANKRD45Q5TZF3 282 aa14.42□□□□□ -0.1
TRIM40-208ENST00000489892 AKT1S1Q96B36 256 aa14.42□□□□□ -0.1
TRIM40-208ENST00000489892 UTP14AQ9BVJ6 771 aaKnown RBP14.42□□□□□ -0.1
TRIM40-208ENST00000489892 NYXQ9GZU5 481 aa14.42□□□□□ -0.1
TRIM40-208ENST00000489892 BICC1Q9H694 974 aaKnown RBP14.42□□□□□ -0.1
TRIM40-208ENST00000489892 TRMT112Q9UI30 125 aaKnown RBP14.42□□□□□ -0.1
TRIM40-208ENST00000489892 NIP7Q9Y221 180 aaKnown RBP eCLIP14.42□□□□□ -0.1
TRIM40-208ENST00000489892 SH3TC1Q8TE82 1336 aa14.41□□□□□ -0.1
TRIM40-208ENST00000489892 PNMA6EA0A0J9YXQ4 647 aa14.41□□□□□ -0.1
TRIM40-208ENST00000489892 GPTP24298 496 aa14.41□□□□□ -0.1
TRIM40-208ENST00000489892 KCNQ4P56696 695 aa14.41□□□□□ -0.1
TRIM40-208ENST00000489892 OS9Q13438 667 aaPredicted RBP14.41□□□□□ -0.1
TRIM40-208ENST00000489892 LRRCC1Q9C099 1032 aa14.41□□□□□ -0.1
TRIM40-208ENST00000489892 USP42Q9H9J4 1324 aaKnown RBP14.41□□□□□ -0.1
TRIM40-208ENST00000489892 SURF6O75683 361 aaKnown RBP14.4□□□□□ -0.1
TRIM40-208ENST00000489892 KIF1BPQ96EK5 621 aa14.4□□□□□ -0.1
TRIM40-208ENST00000489892 SETDB2Q96T68 719 aa14.4□□□□□ -0.1
TRIM40-208ENST00000489892 FBXO3Q9UK99 471 aa14.4□□□□□ -0.1
TRIM40-208ENST00000489892 UBR3Q6ZT12 1888 aa14.4□□□□□ -0.1
TRIM40-208ENST00000489892 PNPLA7Q6ZV29 1317 aa14.4□□□□□ -0.1
TRIM40-208ENST00000489892 COL24A1Q17RW2 1714 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms