RNA–Protein interactions for RNA: ENST00000489406.1

UFD1-209, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 2

Gene UFD1, Length 994 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-209ENST00000489406 HIRAP54198 1017 aaPredicted RBP20.69■□□□□ 0.9
UFD1-209ENST00000489406 CDCA8Q53HL2 280 aa20.69■□□□□ 0.9
UFD1-209ENST00000489406 USP48Q86UV5 1035 aa20.69■□□□□ 0.9
UFD1-209ENST00000489406 FAM177BA6PVY3 158 aa20.68■□□□□ 0.9
UFD1-209ENST00000489406 ZNF157P51786 506 aaPredicted RBP20.68■□□□□ 0.9
UFD1-209ENST00000489406 TPTE2Q6XPS3 522 aa20.68■□□□□ 0.9
UFD1-209ENST00000489406 ZC3H15Q8WU90 426 aaKnown RBP20.68■□□□□ 0.9
UFD1-209ENST00000489406 CSRNP1Q96S65 589 aa20.68■□□□□ 0.9
UFD1-209ENST00000489406 HDAC9Q9UKV0 1011 aa20.68■□□□□ 0.9
UFD1-209ENST00000489406 AKAP11Q9UKA4 1901 aa20.68■□□□□ 0.9
UFD1-209ENST00000489406 UBR2Q8IWV8 1755 aa20.67■□□□□ 0.9
UFD1-209ENST00000489406 GMPSP49915 693 aaPredicted RBP20.67■□□□□ 0.9
UFD1-209ENST00000489406 CC2D2BQ6DHV5 1058 aa20.67■□□□□ 0.9
UFD1-209ENST00000489406 ZNF496Q96IT1 587 aaPredicted RBP20.67■□□□□ 0.9
UFD1-209ENST00000489406 TEX13AQ9BXU3 409 aaPredicted RBP20.67■□□□□ 0.9
UFD1-209ENST00000489406 NPC1L1Q9UHC9 1359 aa20.65■□□□□ 0.9
UFD1-209ENST00000489406 CXCL9Q07325 125 aa20.65■□□□□ 0.9
UFD1-209ENST00000489406 TRPM4Q8TD43 1214 aa20.65■□□□□ 0.9
UFD1-209ENST00000489406 GBA2Q9HCG7 927 aaPredicted RBP20.65■□□□□ 0.9
UFD1-209ENST00000489406 HEG1Q9ULI3 1381 aa20.64■□□□□ 0.89
UFD1-209ENST00000489406 PPIP5K2O43314 1243 aa20.64■□□□□ 0.89
UFD1-209ENST00000489406 SLC51AQ86UW1 340 aa20.64■□□□□ 0.89
UFD1-209ENST00000489406 C2orf69Q8N8R5 385 aa20.64■□□□□ 0.89
UFD1-209ENST00000489406 CLEC4GQ6UXB4 293 aa20.63■□□□□ 0.89
UFD1-209ENST00000489406 SLC17A8Q8NDX2 589 aa20.63■□□□□ 0.89
UFD1-209ENST00000489406 TCERG1O14776 1098 aaKnown RBP20.62■□□□□ 0.89
UFD1-209ENST00000489406 PIP4K2AP48426 406 aaPredicted RBP20.62■□□□□ 0.89
UFD1-209ENST00000489406 AOC3Q16853 763 aa20.62■□□□□ 0.89
UFD1-209ENST00000489406 ZNF296Q8WUU4 475 aaPredicted RBP20.62■□□□□ 0.89
UFD1-209ENST00000489406 BCL2L13Q9BXK5 485 aa20.62■□□□□ 0.89
UFD1-209ENST00000489406 NIP7Q9Y221 180 aaKnown RBP eCLIP20.62■□□□□ 0.89
UFD1-209ENST00000489406 GTF2E1P29083 439 aaPredicted RBP20.61■□□□□ 0.89
UFD1-209ENST00000489406 FBXO46Q6PJ61 603 aaPredicted RBP20.61■□□□□ 0.89
UFD1-209ENST00000489406 COLQQ9Y215 455 aaPredicted RBP20.61■□□□□ 0.89
UFD1-209ENST00000489406 ZNF652Q9Y2D9 606 aa20.61■□□□□ 0.89
UFD1-209ENST00000489406 MKI67P46013 3256 aaKnown RBP20.61■□□□□ 0.89
UFD1-209ENST00000489406 SLC10A3P09131 477 aa20.6■□□□□ 0.89
UFD1-209ENST00000489406 ZNRF3Q9ULT6 936 aa20.6■□□□□ 0.89
UFD1-209ENST00000489406 SHTN1A0MZ66 631 aa20.59■□□□□ 0.89
UFD1-209ENST00000489406 GRIPAP1Q4V328 841 aa20.59■□□□□ 0.89
UFD1-209ENST00000489406 ZNF790Q6PG37 636 aa20.59■□□□□ 0.89
UFD1-209ENST00000489406 TBC1D8O95759 1140 aa20.58■□□□□ 0.89
UFD1-209ENST00000489406 CRY2Q49AN0 593 aa20.58■□□□□ 0.89
UFD1-209ENST00000489406 CDHR2Q9BYE9 1310 aa20.57■□□□□ 0.88
UFD1-209ENST00000489406 MTHFSDQ2M296 383 aaKnown RBP20.57■□□□□ 0.88
UFD1-209ENST00000489406 KRT26Q7Z3Y9 468 aa20.57■□□□□ 0.88
UFD1-209ENST00000489406 CNOT7Q9UIV1 285 aaKnown RBP20.57■□□□□ 0.88
UFD1-209ENST00000489406 SZT2Q5T011 3432 aa20.56■□□□□ 0.88
UFD1-209ENST00000489406 POTEFA5A3E0 1075 aa20.56■□□□□ 0.88
UFD1-209ENST00000489406 RAD17O75943 681 aa20.56■□□□□ 0.88
UFD1-209ENST00000489406 IL13P35225 146 aa20.56■□□□□ 0.88
UFD1-209ENST00000489406 REM2Q8IYK8 340 aaPredicted RBP20.56■□□□□ 0.88
UFD1-209ENST00000489406 RPGRQ92834 1020 aaKnown RBP20.56■□□□□ 0.88
UFD1-209ENST00000489406 FMNL2Q96PY5 1086 aa20.55■□□□□ 0.88
UFD1-209ENST00000489406 CUL9Q8IWT3 2517 aa20.54■□□□□ 0.88
UFD1-209ENST00000489406 ADM5C9JUS6 153 aa20.54■□□□□ 0.88
UFD1-209ENST00000489406 H7C1D1 291 aa20.54■□□□□ 0.88
UFD1-209ENST00000489406 PPEF1O14829 653 aaPredicted RBP20.54■□□□□ 0.88
UFD1-209ENST00000489406 HMOX1P09601 288 aa20.53■□□□□ 0.88
UFD1-209ENST00000489406 HOXA10P31260 410 aaPredicted RBP20.53■□□□□ 0.88
UFD1-209ENST00000489406 TNIP1Q15025 636 aa20.53■□□□□ 0.88
UFD1-209ENST00000489406 NUTM1Q86Y26 1132 aa20.53■□□□□ 0.88
UFD1-209ENST00000489406 ABCC12Q96J65 1359 aa20.53■□□□□ 0.88
UFD1-209ENST00000489406 TRIOBPQ9H2D6 2365 aa20.52■□□□□ 0.88
UFD1-209ENST00000489406 TEFQ10587 303 aa20.52■□□□□ 0.88
UFD1-209ENST00000489406 SAMD7Q7Z3H4 446 aa20.52■□□□□ 0.88
UFD1-209ENST00000489406 RASAL3Q86YV0 1011 aa20.52■□□□□ 0.88
UFD1-209ENST00000489406 MICALL2Q8IY33 904 aa20.52■□□□□ 0.88
UFD1-209ENST00000489406 VPS33BQ9H267 617 aa20.52■□□□□ 0.88
UFD1-209ENST00000489406 USP16Q9Y5T5 823 aa20.52■□□□□ 0.88
UFD1-209ENST00000489406 GPR25O00155 361 aa20.51■□□□□ 0.87
UFD1-209ENST00000489406 TBC1D10BQ4KMP7 808 aaPredicted RBP20.5■□□□□ 0.87
UFD1-209ENST00000489406 DCPSQ96C86 337 aaKnown RBP20.5■□□□□ 0.87
UFD1-209ENST00000489406 A0A0C4DFX4 3053 aa20.5■□□□□ 0.87
UFD1-209ENST00000489406 HLFQ16534 295 aa20.49■□□□□ 0.87
UFD1-209ENST00000489406 RBM17Q96I25 401 aaKnown RBP20.49■□□□□ 0.87
UFD1-209ENST00000489406 CRAMP1Q96RY5 1269 aa20.49■□□□□ 0.87
UFD1-209ENST00000489406 TMX4Q9H1E5 349 aaPredicted RBP20.49■□□□□ 0.87
UFD1-209ENST00000489406 KIF7Q2M1P5 1343 aa20.49■□□□□ 0.87
UFD1-209ENST00000489406 POLR2AP24928 1970 aaKnown RBP20.48■□□□□ 0.87
UFD1-209ENST00000489406 KCNQ3O43525 872 aa20.48■□□□□ 0.87
UFD1-209ENST00000489406 ZBTB12Q9Y330 459 aaPredicted RBP20.48■□□□□ 0.87
UFD1-209ENST00000489406 PRAMEF22A3QJZ6 481 aa20.47■□□□□ 0.87
UFD1-209ENST00000489406 EGFRP00533 1210 aa20.47■□□□□ 0.87
UFD1-209ENST00000489406 RBM26Q5T8P6 1007 aaKnown RBP20.47■□□□□ 0.87
UFD1-209ENST00000489406 INTS3Q68E01 1043 aaKnown RBP20.47■□□□□ 0.87
UFD1-209ENST00000489406 SUPT20HQ8NEM7 779 aa20.47■□□□□ 0.87
UFD1-209ENST00000489406 IL17REQ8NFR9 667 aa20.47■□□□□ 0.87
UFD1-209ENST00000489406 NYXQ9GZU5 481 aa20.47■□□□□ 0.87
UFD1-209ENST00000489406 MORC1Q86VD1 984 aa20.46■□□□□ 0.87
UFD1-209ENST00000489406 POLR3GLQ9BT43 218 aa20.46■□□□□ 0.87
UFD1-209ENST00000489406 RIC1Q4ADV7 1423 aa20.45■□□□□ 0.86
UFD1-209ENST00000489406 RGL2O15211 777 aa20.45■□□□□ 0.86
UFD1-209ENST00000489406 FKTNO75072 461 aa20.45■□□□□ 0.86
UFD1-209ENST00000489406 EN2P19622 333 aaPredicted RBP20.45■□□□□ 0.86
UFD1-209ENST00000489406 RTFDC1Q9BY42 306 aaPredicted RBP20.45■□□□□ 0.86
UFD1-209ENST00000489406 ATP6V0A2Q9Y487 856 aa20.45■□□□□ 0.86
UFD1-209ENST00000489406 PAPPA2Q9BXP8 1791 aa20.44■□□□□ 0.86
UFD1-209ENST00000489406 YDJCA8MPS7 323 aa20.44■□□□□ 0.86
UFD1-209ENST00000489406 KIAA2012Q0VF49 1180 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms