RNA–Protein interactions for RNA: ENST00000483414.1

LIMK1-205, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 3,374 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-205ENST00000483414 IPO8O15397 1037 aaKnown RBP12.14□□□□□ -0.47
LIMK1-205ENST00000483414 CLEC4GQ6UXB4 293 aa12.14□□□□□ -0.47
LIMK1-205ENST00000483414 PDGFDQ9GZP0 370 aaPredicted RBP12.14□□□□□ -0.47
LIMK1-205ENST00000483414 USP44Q9H0E7 712 aa12.14□□□□□ -0.47
LIMK1-205ENST00000483414 ZBTB40Q9NUA8 1239 aa12.14□□□□□ -0.47
LIMK1-205ENST00000483414 SRP68Q9UHB9 627 aaKnown RBP12.14□□□□□ -0.47
LIMK1-205ENST00000483414 RTCBQ9Y3I0 505 aaKnown RBP12.14□□□□□ -0.47
LIMK1-205ENST00000483414 TCIRG1Q13488 830 aa12.14□□□□□ -0.47
LIMK1-205ENST00000483414 BACH2Q9BYV9 841 aa12.14□□□□□ -0.47
LIMK1-205ENST00000483414 TBC1D2BQ9UPU7 963 aa12.14□□□□□ -0.47
LIMK1-205ENST00000483414 TM4SF1P30408 202 aa12.13□□□□□ -0.47
LIMK1-205ENST00000483414 AIMP1Q12904 312 aaKnown RBP12.13□□□□□ -0.47
LIMK1-205ENST00000483414 CWF19L2Q2TBE0 894 aaKnown RBP12.13□□□□□ -0.47
LIMK1-205ENST00000483414 LINS1Q8NG48 757 aa12.13□□□□□ -0.47
LIMK1-205ENST00000483414 AK7Q96M32 723 aa12.13□□□□□ -0.47
LIMK1-205ENST00000483414 ARXQ96QS3 562 aa12.13□□□□□ -0.47
LIMK1-205ENST00000483414 A0A087WZG4 1122 aa12.13□□□□□ -0.47
LIMK1-205ENST00000483414 CLUAP1Q96AJ1 413 aa12.13□□□□□ -0.47
LIMK1-205ENST00000483414 ZBTB3Q9H5J0 574 aa12.13□□□□□ -0.47
LIMK1-205ENST00000483414 ALDH1L1O75891 902 aa12.12□□□□□ -0.47
LIMK1-205ENST00000483414 CCT4P50991 539 aaKnown RBP12.12□□□□□ -0.47
LIMK1-205ENST00000483414 GCKRQ14397 625 aa12.12□□□□□ -0.47
LIMK1-205ENST00000483414 TBC1D9BQ66K14 1250 aa12.12□□□□□ -0.47
LIMK1-205ENST00000483414 NLRP10Q86W26 655 aa12.12□□□□□ -0.47
LIMK1-205ENST00000483414 USPL1Q5W0Q7 1092 aa12.12□□□□□ -0.47
LIMK1-205ENST00000483414 ARAP2Q8WZ64 1704 aa12.11□□□□□ -0.47
LIMK1-205ENST00000483414 H7C1W4 665 aa12.11□□□□□ -0.47
LIMK1-205ENST00000483414 NTSR2O95665 410 aa12.11□□□□□ -0.47
LIMK1-205ENST00000483414 DDX58O95786 925 aaKnown RBP12.11□□□□□ -0.47
LIMK1-205ENST00000483414 HMGB2P26583 209 aaKnown RBP12.11□□□□□ -0.47
LIMK1-205ENST00000483414 TRAPPC3LQ5T215 181 aa12.11□□□□□ -0.47
LIMK1-205ENST00000483414 COG6Q9Y2V7 657 aa12.11□□□□□ -0.47
LIMK1-205ENST00000483414 SRCAPQ6ZRS2 3230 aa12.11□□□□□ -0.47
LIMK1-205ENST00000483414 MEIS3Q99687 375 aa12.11□□□□□ -0.47
LIMK1-205ENST00000483414 NBPF7P0C2Y1 421 aaPredicted RBP12.1□□□□□ -0.47
LIMK1-205ENST00000483414 KIF6Q6ZMV9 814 aa12.1□□□□□ -0.47
LIMK1-205ENST00000483414 MYD88Q99836 296 aa12.1□□□□□ -0.47
LIMK1-205ENST00000483414 CCDC191Q8NCU4 936 aa12.1□□□□□ -0.47
LIMK1-205ENST00000483414 SGIP1Q9BQI5 828 aa12.1□□□□□ -0.47
LIMK1-205ENST00000483414 UTRNP46939 3433 aa12.1□□□□□ -0.47
LIMK1-205ENST00000483414 CACNA1SQ13698 1873 aa12.1□□□□□ -0.47
LIMK1-205ENST00000483414 DDR1Q08345 913 aa12.1□□□□□ -0.47
LIMK1-205ENST00000483414 SIRT2Q8IXJ6 389 aa12.1□□□□□ -0.47
LIMK1-205ENST00000483414 ABCC12Q96J65 1359 aa12.1□□□□□ -0.47
LIMK1-205ENST00000483414 CDHR2Q9BYE9 1310 aa12.09□□□□□ -0.47
LIMK1-205ENST00000483414 SF3B2Q13435 895 aaKnown RBP12.09□□□□□ -0.47
LIMK1-205ENST00000483414 RIC3Q7Z5B4 369 aa12.09□□□□□ -0.47
LIMK1-205ENST00000483414 CARMIL3Q8ND23 1372 aa12.09□□□□□ -0.47
LIMK1-205ENST00000483414 PHF14O94880 888 aa12.09□□□□□ -0.47
LIMK1-205ENST00000483414 SUSD4Q5VX71 490 aa12.09□□□□□ -0.47
LIMK1-205ENST00000483414 PLA2G12BQ9BX93 195 aa12.09□□□□□ -0.47
LIMK1-205ENST00000483414 ZNF646O15015 1829 aaPredicted RBP12.09□□□□□ -0.47
LIMK1-205ENST00000483414 POLRMTO00411 1230 aaKnown RBP12.09□□□□□ -0.47
LIMK1-205ENST00000483414 SRCIN1Q9C0H9 1055 aa12.09□□□□□ -0.47
LIMK1-205ENST00000483414 ATP5J2-PTCD1G3V325 749 aa12.08□□□□□ -0.48
LIMK1-205ENST00000483414 MS4A1P11836 297 aa12.08□□□□□ -0.48
LIMK1-205ENST00000483414 FOXO4P98177 505 aa12.08□□□□□ -0.48
LIMK1-205ENST00000483414 NFIXQ14938 502 aa12.08□□□□□ -0.48
LIMK1-205ENST00000483414 RABL6Q3YEC7 729 aaPredicted RBP12.08□□□□□ -0.48
LIMK1-205ENST00000483414 FLAD1Q8NFF5 587 aa12.08□□□□□ -0.48
LIMK1-205ENST00000483414 DDX19BQ9UMR2 479 aa12.08□□□□□ -0.48
LIMK1-205ENST00000483414 ANKRD44Q8N8A2 993 aa12.08□□□□□ -0.48
LIMK1-205ENST00000483414 TFCP2L1Q9NZI6 479 aa12.08□□□□□ -0.48
LIMK1-205ENST00000483414 C10orf71Q711Q0 1435 aa12.08□□□□□ -0.48
LIMK1-205ENST00000483414 GRM8O00222 908 aa12.07□□□□□ -0.48
LIMK1-205ENST00000483414 MTX1Q13505 466 aa12.07□□□□□ -0.48
LIMK1-205ENST00000483414 PCDHB15Q9Y5E8 787 aa12.07□□□□□ -0.48
LIMK1-205ENST00000483414 PCCAP05165 728 aaPredicted RBP12.07□□□□□ -0.48
LIMK1-205ENST00000483414 HSP90AB3PQ58FF7 597 aa12.07□□□□□ -0.48
LIMK1-205ENST00000483414 EPHA10Q5JZY3 1008 aa12.07□□□□□ -0.48
LIMK1-205ENST00000483414 SYNE4Q8N205 404 aa12.07□□□□□ -0.48
LIMK1-205ENST00000483414 ZBTB38Q8NAP3 1195 aaPredicted RBP12.07□□□□□ -0.48
LIMK1-205ENST00000483414 FTSJ3Q8IY81 847 aaKnown RBP12.07□□□□□ -0.48
LIMK1-205ENST00000483414 DDRGK1Q96HY6 314 aa12.07□□□□□ -0.48
LIMK1-205ENST00000483414 RFC4P35249 363 aa12.06□□□□□ -0.48
LIMK1-205ENST00000483414 ITPRIPQ8IWB1 547 aa12.06□□□□□ -0.48
LIMK1-205ENST00000483414 STK32BQ9NY57 414 aa12.06□□□□□ -0.48
LIMK1-205ENST00000483414 KDM2BQ8NHM5 1336 aa12.06□□□□□ -0.48
LIMK1-205ENST00000483414 KLRG2A4D1S0 409 aaPredicted RBP12.06□□□□□ -0.48
LIMK1-205ENST00000483414 SLC10A5Q5PT55 438 aa12.06□□□□□ -0.48
LIMK1-205ENST00000483414 SLC4A10Q6U841 1118 aa12.06□□□□□ -0.48
LIMK1-205ENST00000483414 CWC25Q9NXE8 425 aaPredicted RBP12.06□□□□□ -0.48
LIMK1-205ENST00000483414 AAMPQ13685 434 aa12.05□□□□□ -0.48
LIMK1-205ENST00000483414 CENPQQ7L2Z9 268 aaPredicted RBP12.05□□□□□ -0.48
LIMK1-205ENST00000483414 SUCLG2Q96I99 432 aa12.05□□□□□ -0.48
LIMK1-205ENST00000483414 RTL9Q8NET4 1388 aa12.05□□□□□ -0.48
LIMK1-205ENST00000483414 PARP10Q53GL7 1025 aa12.05□□□□□ -0.48
LIMK1-205ENST00000483414 C3orf67Q6ZVT6 689 aa12.05□□□□□ -0.48
LIMK1-205ENST00000483414 ZNF330Q9Y3S2 320 aaPredicted RBP12.05□□□□□ -0.48
LIMK1-205ENST00000483414 CSF1RP07333 972 aa12.04□□□□□ -0.48
LIMK1-205ENST00000483414 RFX5P48382 616 aaPredicted RBP12.04□□□□□ -0.48
LIMK1-205ENST00000483414 POLA2Q14181 598 aa12.04□□□□□ -0.48
LIMK1-205ENST00000483414 CEP85Q6P2H3 762 aa12.04□□□□□ -0.48
LIMK1-205ENST00000483414 ZNF652Q9Y2D9 606 aa12.04□□□□□ -0.48
LIMK1-205ENST00000483414 SNED1Q8TER0 1413 aa12.04□□□□□ -0.48
LIMK1-205ENST00000483414 ARFGEF1Q9Y6D6 1849 aa12.04□□□□□ -0.48
LIMK1-205ENST00000483414 ZPR1O75312 459 aa12.04□□□□□ -0.48
LIMK1-205ENST00000483414 NIP7Q9Y221 180 aaKnown RBP eCLIP12.04□□□□□ -0.48
LIMK1-205ENST00000483414 GPTP24298 496 aa12.04□□□□□ -0.48
LIMK1-205ENST00000483414 PTGER2P43116 358 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms