RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 CTNNBL1Q8WYA6 563 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-224ENST00000478916 NUP88Q99567 741 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-224ENST00000478916 CWC25Q9NXE8 425 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-224ENST00000478916 TTC31Q49AM3 519 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-224ENST00000478916 PIBF1Q8WXW3 757 aa10.15□□□□□ -0.78
SYNE1-224ENST00000478916 HOMER2Q9NSB8 354 aa10.15□□□□□ -0.78
SYNE1-224ENST00000478916 ZNF608Q9ULD9 1512 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-224ENST00000478916 MSL1Q68DK7 614 aa10.15□□□□□ -0.78
SYNE1-224ENST00000478916 NAP1L3Q99457 506 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-224ENST00000478916 GTPBP4Q9BZE4 634 aaKnown RBP10.15□□□□□ -0.78
SYNE1-224ENST00000478916 PLEKHH1Q9ULM0 1364 aa10.15□□□□□ -0.78
SYNE1-224ENST00000478916 SPTY2D1Q68D10 685 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-224ENST00000478916 ANKRD36BQ8N2N9 1353 aa10.15□□□□□ -0.78
SYNE1-224ENST00000478916 SCAND2PQ9GZW5 306 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-224ENST00000478916 PHAXQ9H814 394 aaKnown RBP10.15□□□□□ -0.78
SYNE1-224ENST00000478916 ASXL2Q76L83 1435 aa10.15□□□□□ -0.78
SYNE1-224ENST00000478916 ACEP12821 1306 aa10.15□□□□□ -0.79
SYNE1-224ENST00000478916 MYO1BO43795 1136 aa10.15□□□□□ -0.79
SYNE1-224ENST00000478916 ZFP91Q96JP5 570 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-224ENST00000478916 RAB34Q9BZG1 259 aa10.14□□□□□ -0.79
SYNE1-224ENST00000478916 CPSF2Q9P2I0 782 aaKnown RBP10.14□□□□□ -0.79
SYNE1-224ENST00000478916 ZNF219Q9P2Y4 722 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-224ENST00000478916 NKTRP30414 1462 aaKnown RBP10.14□□□□□ -0.79
SYNE1-224ENST00000478916 ZNF518AQ6AHZ1 1483 aa10.14□□□□□ -0.79
SYNE1-224ENST00000478916 BAG3O95817 575 aa10.14□□□□□ -0.79
SYNE1-224ENST00000478916 ZBTB3Q9H5J0 574 aa10.14□□□□□ -0.79
SYNE1-224ENST00000478916 CEP83Q9Y592 693 aa10.14□□□□□ -0.79
SYNE1-224ENST00000478916 WDR97A6NE52 1622 aa10.14□□□□□ -0.79
SYNE1-224ENST00000478916 RAPGEF6Q8TEU7 1601 aa10.14□□□□□ -0.79
SYNE1-224ENST00000478916 SNRPA1P09661 255 aaKnown RBP10.14□□□□□ -0.79
SYNE1-224ENST00000478916 GPTP24298 496 aa10.14□□□□□ -0.79
SYNE1-224ENST00000478916 DDX12PQ92771 950 aa10.14□□□□□ -0.79
SYNE1-224ENST00000478916 ITSN2Q9NZM3 1697 aa10.14□□□□□ -0.79
SYNE1-224ENST00000478916 TMCO5BA8MYB1 307 aa10.14□□□□□ -0.79
SYNE1-224ENST00000478916 FAM114A1Q8IWE2 563 aa10.14□□□□□ -0.79
SYNE1-224ENST00000478916 PIK3R4Q99570 1358 aa10.13□□□□□ -0.79
SYNE1-224ENST00000478916 DUOX2Q9NRD8 1548 aa10.13□□□□□ -0.79
SYNE1-224ENST00000478916 CCDC155Q8N6L0 562 aa10.13□□□□□ -0.79
SYNE1-224ENST00000478916 ANKS4BQ8N8V4 417 aa10.13□□□□□ -0.79
SYNE1-224ENST00000478916 ZNF622Q969S3 477 aaKnown RBP eCLIP10.13□□□□□ -0.79
SYNE1-224ENST00000478916 BOLA2Q9H3K6 86 aa10.13□□□□□ -0.79
SYNE1-224ENST00000478916 RSPH14Q9UHP6 348 aa10.13□□□□□ -0.79
SYNE1-224ENST00000478916 HLA-DOAP06340 250 aa10.13□□□□□ -0.79
SYNE1-224ENST00000478916 TMX1Q9H3N1 280 aa10.13□□□□□ -0.79
SYNE1-224ENST00000478916 NBPF6Q5VWK0 638 aa10.13□□□□□ -0.79
SYNE1-224ENST00000478916 KLHL10Q6JEL2 608 aa10.13□□□□□ -0.79
SYNE1-224ENST00000478916 NBPF5PQ86XG9 351 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-224ENST00000478916 MICALL1Q8N3F8 863 aa10.13□□□□□ -0.79
SYNE1-224ENST00000478916 NBPF4Q96M43 638 aa10.13□□□□□ -0.79
SYNE1-224ENST00000478916 CCDC171Q6TFL3 1326 aa10.13□□□□□ -0.79
SYNE1-224ENST00000478916 RANBP6O60518 1105 aaKnown RBP10.13□□□□□ -0.79
SYNE1-224ENST00000478916 GSTO1P78417 241 aa10.13□□□□□ -0.79
SYNE1-224ENST00000478916 WDR78Q5VTH9 848 aa10.13□□□□□ -0.79
SYNE1-224ENST00000478916 USP25Q9UHP3 1055 aa10.13□□□□□ -0.79
SYNE1-224ENST00000478916 TMEM266Q2M3C6 531 aa10.13□□□□□ -0.79
SYNE1-224ENST00000478916 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.13□□□□□ -0.79
SYNE1-224ENST00000478916 ARFGAP3Q9NP61 516 aa10.13□□□□□ -0.79
SYNE1-224ENST00000478916 SLC12A7Q9Y666 1083 aa10.13□□□□□ -0.79
SYNE1-224ENST00000478916 MAP3K2Q9Y2U5 619 aa10.13□□□□□ -0.79
SYNE1-224ENST00000478916 NOL3O60936 208 aaKnown RBP10.12□□□□□ -0.79
SYNE1-224ENST00000478916 ADCY5O95622 1261 aa10.12□□□□□ -0.79
SYNE1-224ENST00000478916 FLIIQ13045 1269 aa10.12□□□□□ -0.79
SYNE1-224ENST00000478916 CCDC152Q4G0S7 254 aa10.12□□□□□ -0.79
SYNE1-224ENST00000478916 MPHOSPH6Q99547 160 aaKnown RBP10.12□□□□□ -0.79
SYNE1-224ENST00000478916 CABP5Q9NP86 173 aa10.12□□□□□ -0.79
SYNE1-224ENST00000478916 ZNF213O14771 459 aa10.12□□□□□ -0.79
SYNE1-224ENST00000478916 DNA2P51530 1060 aa10.12□□□□□ -0.79
SYNE1-224ENST00000478916 CKAP4Q07065 602 aaKnown RBP10.12□□□□□ -0.79
SYNE1-224ENST00000478916 PUS7Q96PZ0 661 aaKnown RBP10.12□□□□□ -0.79
SYNE1-224ENST00000478916 ATP2C2O75185 946 aa10.12□□□□□ -0.79
SYNE1-224ENST00000478916 CCDC150Q8NCX0 1101 aa10.12□□□□□ -0.79
SYNE1-224ENST00000478916 PLCH2O75038 1416 aa10.12□□□□□ -0.79
SYNE1-224ENST00000478916 UVSSAQ2YD98 709 aa10.12□□□□□ -0.79
SYNE1-224ENST00000478916 CCDC12Q8WUD4 166 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-224ENST00000478916 SERPINA10Q9UK55 444 aa10.12□□□□□ -0.79
SYNE1-224ENST00000478916 TMC6Q7Z403 805 aa10.12□□□□□ -0.79
SYNE1-224ENST00000478916 CATIPQ7Z7H3 387 aa10.12□□□□□ -0.79
SYNE1-224ENST00000478916 THOC2Q8NI27 1593 aaKnown RBP10.12□□□□□ -0.79
SYNE1-224ENST00000478916 A2MP01023 1474 aa10.12□□□□□ -0.79
SYNE1-224ENST00000478916 CTNNA2P26232 953 aa10.12□□□□□ -0.79
SYNE1-224ENST00000478916 TDRD12Q587J7 1177 aaKnown RBP10.12□□□□□ -0.79
SYNE1-224ENST00000478916 PRPF40BQ6NWY9 871 aaKnown RBP10.12□□□□□ -0.79
SYNE1-224ENST00000478916 EHBP1Q8NDI1 1231 aa10.12□□□□□ -0.79
SYNE1-224ENST00000478916 ZCRB1Q8TBF4 217 aaKnown RBP10.12□□□□□ -0.79
SYNE1-224ENST00000478916 SSH1Q8WYL5 1049 aa10.12□□□□□ -0.79
SYNE1-224ENST00000478916 WDR7Q9Y4E6 1490 aa10.12□□□□□ -0.79
SYNE1-224ENST00000478916 A0A1W2PRG0 241 aa10.11□□□□□ -0.79
SYNE1-224ENST00000478916 SREK1Q8WXA9 508 aaKnown RBP10.11□□□□□ -0.79
SYNE1-224ENST00000478916 STX1AQ16623 288 aa10.11□□□□□ -0.79
SYNE1-224ENST00000478916 TSNARE1Q96NA8 513 aa10.11□□□□□ -0.79
SYNE1-224ENST00000478916 ZWINTO95229 277 aa10.11□□□□□ -0.79
SYNE1-224ENST00000478916 PDE4BQ07343 736 aa10.11□□□□□ -0.79
SYNE1-224ENST00000478916 CHRNA2Q15822 529 aa10.11□□□□□ -0.79
SYNE1-224ENST00000478916 PPP1R14CQ8TAE6 165 aa10.11□□□□□ -0.79
SYNE1-224ENST00000478916 BIVM-ERCC5R4GMW8 1640 aa10.11□□□□□ -0.79
SYNE1-224ENST00000478916 SETSIPP0DME0 302 aa10.11□□□□□ -0.79
SYNE1-224ENST00000478916 KIF5BP33176 963 aa10.11□□□□□ -0.79
SYNE1-224ENST00000478916 MXRA7P84157 204 aa10.11□□□□□ -0.79
SYNE1-224ENST00000478916 LDHAL6AQ6ZMR3 332 aa10.11□□□□□ -0.79
SYNE1-224ENST00000478916 OPA1O60313 960 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms