RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 RREB1Q92766 1687 aa14.91□□□□□ -0.02
SYNE1-222ENST00000474655 ANAPC15P60006 121 aa14.9□□□□□ -0.02
SYNE1-222ENST00000474655 DDB1Q16531 1140 aa14.9□□□□□ -0.02
SYNE1-222ENST00000474655 AACSQ86V21 672 aa14.9□□□□□ -0.02
SYNE1-222ENST00000474655 IL27Q8NEV9 243 aa14.9□□□□□ -0.02
SYNE1-222ENST00000474655 KLHDC4Q8TBB5 520 aa14.9□□□□□ -0.02
SYNE1-222ENST00000474655 JARID2Q92833 1246 aaPredicted RBP14.9□□□□□ -0.02
SYNE1-222ENST00000474655 CHMP5Q9NZZ3 219 aa14.9□□□□□ -0.02
SYNE1-222ENST00000474655 SGSM2O43147 1006 aa14.89□□□□□ -0.03
SYNE1-222ENST00000474655 PRIM1P49642 420 aaKnown RBP14.89□□□□□ -0.03
SYNE1-222ENST00000474655 LMBR1LQ6UX01 489 aa14.89□□□□□ -0.03
SYNE1-222ENST00000474655 SIL1Q9H173 461 aa14.89□□□□□ -0.03
SYNE1-222ENST00000474655 ZNF831Q5JPB2 1677 aa14.89□□□□□ -0.03
SYNE1-222ENST00000474655 MAP3K15Q6ZN16 1313 aa14.89□□□□□ -0.03
SYNE1-222ENST00000474655 PIP4K2BP78356 416 aa14.88□□□□□ -0.03
SYNE1-222ENST00000474655 GIGYF2Q6Y7W6 1299 aaKnown RBP14.88□□□□□ -0.03
SYNE1-222ENST00000474655 CIZ1Q9ULV3 898 aaPredicted RBP14.88□□□□□ -0.03
SYNE1-222ENST00000474655 MYH3P11055 1940 aa14.88□□□□□ -0.03
SYNE1-222ENST00000474655 KIF6Q6ZMV9 814 aa14.88□□□□□ -0.03
SYNE1-222ENST00000474655 MARCH10Q8NA82 808 aaPredicted RBP14.88□□□□□ -0.03
SYNE1-222ENST00000474655 EVI5LQ96CN4 794 aa14.88□□□□□ -0.03
SYNE1-222ENST00000474655 PLA2G12BQ9BX93 195 aa14.88□□□□□ -0.03
SYNE1-222ENST00000474655 IL25Q9H293 177 aa14.88□□□□□ -0.03
SYNE1-222ENST00000474655 FRAT2O75474 233 aaPredicted RBP14.87□□□□□ -0.03
SYNE1-222ENST00000474655 MAP4K4O95819 1239 aaPredicted RBP14.87□□□□□ -0.03
SYNE1-222ENST00000474655 PCCAP05165 728 aaPredicted RBP14.87□□□□□ -0.03
SYNE1-222ENST00000474655 ANO2Q9NQ90 1003 aa14.87□□□□□ -0.03
SYNE1-222ENST00000474655 NUTM2BA6NNL0 878 aaPredicted RBP14.86□□□□□ -0.03
SYNE1-222ENST00000474655 NUTM2EB1AL46 878 aaPredicted RBP14.86□□□□□ -0.03
SYNE1-222ENST00000474655 MCCP23508 829 aa14.86□□□□□ -0.03
SYNE1-222ENST00000474655 IL6STP40189 918 aaPredicted RBP14.86□□□□□ -0.03
SYNE1-222ENST00000474655 TNNI3KQ59H18 835 aa14.86□□□□□ -0.03
SYNE1-222ENST00000474655 NUTM2AQ8IVF1 878 aaPredicted RBP14.86□□□□□ -0.03
SYNE1-222ENST00000474655 CCDC8Q9H0W5 538 aaPredicted RBP14.86□□□□□ -0.03
SYNE1-222ENST00000474655 GPR108Q9NPR9 543 aa14.86□□□□□ -0.03
SYNE1-222ENST00000474655 FPGT-TNNI3KV9GXZ4 949 aa14.86□□□□□ -0.03
SYNE1-222ENST00000474655 JCADQ9P266 1359 aa14.86□□□□□ -0.03
SYNE1-222ENST00000474655 BCL9LQ86UU0 1499 aa14.86□□□□□ -0.03
SYNE1-222ENST00000474655 ST18O60284 1047 aa14.85□□□□□ -0.03
SYNE1-222ENST00000474655 HSPA4P34932 840 aa14.85□□□□□ -0.03
SYNE1-222ENST00000474655 HSP90AB3PQ58FF7 597 aa14.85□□□□□ -0.03
SYNE1-222ENST00000474655 ATG9AQ7Z3C6 839 aa14.85□□□□□ -0.03
SYNE1-222ENST00000474655 SPRYD3Q8NCJ5 442 aa14.85□□□□□ -0.03
SYNE1-222ENST00000474655 TLR7Q9NYK1 1049 aaKnown RBP14.85□□□□□ -0.03
SYNE1-222ENST00000474655 RAD50Q92878 1312 aa14.85□□□□□ -0.03
SYNE1-222ENST00000474655 ERVV-1B6SEH8 477 aa14.85□□□□□ -0.03
SYNE1-222ENST00000474655 CIAO1O76071 339 aa14.85□□□□□ -0.03
SYNE1-222ENST00000474655 ATP5JP18859 108 aa14.85□□□□□ -0.03
SYNE1-222ENST00000474655 TFCP2Q12800 502 aa14.85□□□□□ -0.03
SYNE1-222ENST00000474655 ZBTB38Q8NAP3 1195 aaPredicted RBP14.85□□□□□ -0.03
SYNE1-222ENST00000474655 RUFY2Q8WXA3 655 aa14.85□□□□□ -0.03
SYNE1-222ENST00000474655 SYTL4Q96C24 671 aaPredicted RBP14.85□□□□□ -0.03
SYNE1-222ENST00000474655 LSG1Q9H089 658 aaKnown RBP14.85□□□□□ -0.03
SYNE1-222ENST00000474655 SNRKQ9NRH2 765 aa14.85□□□□□ -0.03
SYNE1-222ENST00000474655 FBXO3Q9UK99 471 aa14.85□□□□□ -0.03
SYNE1-222ENST00000474655 ZBTB1Q9Y2K1 713 aa14.85□□□□□ -0.03
SYNE1-222ENST00000474655 CDHR2Q9BYE9 1310 aa14.85□□□□□ -0.03
SYNE1-222ENST00000474655 UBAP1LF5GYI3 381 aa14.84□□□□□ -0.03
SYNE1-222ENST00000474655 HIP1O00291 1037 aa14.84□□□□□ -0.03
SYNE1-222ENST00000474655 DBNLQ9UJU6 430 aaKnown RBP14.84□□□□□ -0.03
SYNE1-222ENST00000474655 COL5A3P25940 1745 aaPredicted RBP14.84□□□□□ -0.03
SYNE1-222ENST00000474655 MYH14Q7Z406 1995 aaKnown RBP14.84□□□□□ -0.03
SYNE1-222ENST00000474655 CSF1RP07333 972 aa14.83□□□□□ -0.03
SYNE1-222ENST00000474655 IL15P40933 162 aaPredicted RBP14.83□□□□□ -0.03
SYNE1-222ENST00000474655 VPS72Q15906 364 aa14.83□□□□□ -0.03
SYNE1-222ENST00000474655 PALD1Q9ULE6 856 aa14.83□□□□□ -0.03
SYNE1-222ENST00000474655 HLFQ16534 295 aa14.83□□□□□ -0.04
SYNE1-222ENST00000474655 FNBP4Q8N3X1 1017 aaPredicted RBP14.83□□□□□ -0.04
SYNE1-222ENST00000474655 RFX7Q2KHR2 1363 aa14.82□□□□□ -0.04
SYNE1-222ENST00000474655 EYA2O00167 538 aa14.82□□□□□ -0.04
SYNE1-222ENST00000474655 MCM2P49736 904 aa14.82□□□□□ -0.04
SYNE1-222ENST00000474655 EIF5P55010 431 aaKnown RBP14.82□□□□□ -0.04
SYNE1-222ENST00000474655 CWC27Q6UX04 472 aaKnown RBP14.82□□□□□ -0.04
SYNE1-222ENST00000474655 NLRP10Q86W26 655 aa14.82□□□□□ -0.04
SYNE1-222ENST00000474655 DIAPH3Q9NSV4 1193 aa14.82□□□□□ -0.04
SYNE1-222ENST00000474655 ZNF330Q9Y3S2 320 aaPredicted RBP14.82□□□□□ -0.04
SYNE1-222ENST00000474655 INTS5Q6P9B9 1019 aaKnown RBP14.81□□□□□ -0.04
SYNE1-222ENST00000474655 TICAM2Q86XR7 235 aa14.81□□□□□ -0.04
SYNE1-222ENST00000474655 SPEF2Q9C093 1822 aa14.81□□□□□ -0.04
SYNE1-222ENST00000474655 SPATA31A6Q5VVP1 1343 aa14.81□□□□□ -0.04
SYNE1-222ENST00000474655 LOC102724428A0A0B4J2F2 783 aa14.8□□□□□ -0.04
SYNE1-222ENST00000474655 SIK1P57059 783 aa14.8□□□□□ -0.04
SYNE1-222ENST00000474655 KCNB2Q92953 911 aa14.8□□□□□ -0.04
SYNE1-222ENST00000474655 BOLA2Q9H3K6 86 aa14.8□□□□□ -0.04
SYNE1-222ENST00000474655 THSD7AQ9UPZ6 1657 aa14.8□□□□□ -0.04
SYNE1-222ENST00000474655 HSP90AA1P07900 732 aaKnown RBP14.8□□□□□ -0.04
SYNE1-222ENST00000474655 NEK4P51957 841 aa14.8□□□□□ -0.04
SYNE1-222ENST00000474655 RAB3GAP1Q15042 981 aa14.8□□□□□ -0.04
SYNE1-222ENST00000474655 KIAA1211Q6ZU35 1233 aa14.8□□□□□ -0.04
SYNE1-222ENST00000474655 DZIP3Q86Y13 1208 aaKnown RBP14.8□□□□□ -0.04
SYNE1-222ENST00000474655 ZNF34Q8IZ26 560 aa14.8□□□□□ -0.04
SYNE1-222ENST00000474655 SMARCC1Q92922 1105 aaPredicted RBP14.8□□□□□ -0.04
SYNE1-222ENST00000474655 CCDC87Q9NVE4 849 aa14.8□□□□□ -0.04
SYNE1-222ENST00000474655 CHMP3Q9Y3E7 222 aa14.8□□□□□ -0.04
SYNE1-222ENST00000474655 CCDC9Q9Y3X0 531 aaKnown RBP14.8□□□□□ -0.04
SYNE1-222ENST00000474655 ZNF609O15014 1411 aa14.79□□□□□ -0.04
SYNE1-222ENST00000474655 FAM89AQ96GI7 184 aa14.79□□□□□ -0.04
SYNE1-222ENST00000474655 ACSBG1Q96GR2 724 aa14.79□□□□□ -0.04
SYNE1-222ENST00000474655 HAUS7Q99871 368 aa14.79□□□□□ -0.04
SYNE1-222ENST00000474655 DBNDD2Q9BQY9 259 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms