RNA–Protein interactions for RNA: ENST00000471455.1

CPSF4-211, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 569 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-211ENST00000471455 ZNF330Q9Y3S2 320 aaPredicted RBP12.24□□□□□ -0.45
CPSF4-211ENST00000471455 ST5P78524 1137 aa12.23□□□□□ -0.45
CPSF4-211ENST00000471455 HTRA3P83110 453 aa12.23□□□□□ -0.45
CPSF4-211ENST00000471455 CNBD1Q8NA66 436 aa12.23□□□□□ -0.45
CPSF4-211ENST00000471455 CNKSR1Q969H4 720 aa12.23□□□□□ -0.45
CPSF4-211ENST00000471455 ZNF496Q96IT1 587 aaPredicted RBP12.23□□□□□ -0.45
CPSF4-211ENST00000471455 CFAP53Q96M91 514 aa12.23□□□□□ -0.45
CPSF4-211ENST00000471455 SETDB2Q96T68 719 aa12.23□□□□□ -0.45
CPSF4-211ENST00000471455 COL3A1P02461 1466 aaPredicted RBP12.22□□□□□ -0.45
CPSF4-211ENST00000471455 LTBP3Q9NS15 1303 aa12.22□□□□□ -0.45
CPSF4-211ENST00000471455 NFKBIEO00221 500 aa12.22□□□□□ -0.45
CPSF4-211ENST00000471455 ERFEQ4G0M1 354 aa12.22□□□□□ -0.45
CPSF4-211ENST00000471455 TBC1D9BQ66K14 1250 aa12.22□□□□□ -0.45
CPSF4-211ENST00000471455 PRR5LQ6MZQ0 368 aa12.22□□□□□ -0.45
CPSF4-211ENST00000471455 TAOK3Q9H2K8 898 aa12.22□□□□□ -0.45
CPSF4-211ENST00000471455 PER1O15534 1290 aaPredicted RBP12.21□□□□□ -0.45
CPSF4-211ENST00000471455 STYK1Q6J9G0 422 aa12.21□□□□□ -0.45
CPSF4-211ENST00000471455 TBC1D2BQ9UPU7 963 aa12.21□□□□□ -0.45
CPSF4-211ENST00000471455 ZNF652Q9Y2D9 606 aa12.21□□□□□ -0.45
CPSF4-211ENST00000471455 C21orf2O43822 256 aa12.2□□□□□ -0.46
CPSF4-211ENST00000471455 TNS4Q8IZW8 715 aa12.2□□□□□ -0.46
CPSF4-211ENST00000471455 IL17REQ8NFR9 667 aa12.2□□□□□ -0.46
CPSF4-211ENST00000471455 NUDCQ9Y266 331 aa12.2□□□□□ -0.46
CPSF4-211ENST00000471455 ANKRD31Q8N7Z5 1873 aa12.2□□□□□ -0.46
CPSF4-211ENST00000471455 SIPA1L3O60292 1781 aaPredicted RBP12.2□□□□□ -0.46
CPSF4-211ENST00000471455 CEMIPQ8WUJ3 1361 aa12.19□□□□□ -0.46
CPSF4-211ENST00000471455 CCDC88AQ3V6T2 1871 aa12.19□□□□□ -0.46
CPSF4-211ENST00000471455 IQCA1LA6NCM1 817 aa12.19□□□□□ -0.46
CPSF4-211ENST00000471455 BTBD11A6QL63 1104 aa12.19□□□□□ -0.46
CPSF4-211ENST00000471455 HOXB3P14651 431 aaPredicted RBP12.19□□□□□ -0.46
CPSF4-211ENST00000471455 PRELPP51888 382 aa12.19□□□□□ -0.46
CPSF4-211ENST00000471455 DZIP3Q86Y13 1208 aaKnown RBP12.19□□□□□ -0.46
CPSF4-211ENST00000471455 RTF1Q92541 710 aaKnown RBP12.19□□□□□ -0.46
CPSF4-211ENST00000471455 MASTLQ96GX5 879 aa12.19□□□□□ -0.46
CPSF4-211ENST00000471455 COL11A2P13942 1736 aaPredicted RBP12.19□□□□□ -0.46
CPSF4-211ENST00000471455 DICER1Q9UPY3 1922 aaKnown RBP12.19□□□□□ -0.46
CPSF4-211ENST00000471455 FER1L6Q2WGJ9 1857 aa12.19□□□□□ -0.46
CPSF4-211ENST00000471455 CAMTA2O94983 1202 aa12.18□□□□□ -0.46
CPSF4-211ENST00000471455 COL13A1Q5TAT6 717 aaPredicted RBP12.18□□□□□ -0.46
CPSF4-211ENST00000471455 PRPF40BQ6NWY9 871 aaKnown RBP12.18□□□□□ -0.46
CPSF4-211ENST00000471455 CLEC4GQ6UXB4 293 aa12.18□□□□□ -0.46
CPSF4-211ENST00000471455 NBPF5PQ86XG9 351 aaPredicted RBP12.18□□□□□ -0.46
CPSF4-211ENST00000471455 BCORQ6W2J9 1755 aa12.18□□□□□ -0.46
CPSF4-211ENST00000471455 ARFGEF2Q9Y6D5 1785 aa12.18□□□□□ -0.46
CPSF4-211ENST00000471455 A1BGP04217 495 aa12.17□□□□□ -0.46
CPSF4-211ENST00000471455 HSPA1AP0DMV8 641 aaKnown RBP12.17□□□□□ -0.46
CPSF4-211ENST00000471455 HSPA1BP0DMV9 641 aaKnown RBP12.17□□□□□ -0.46
CPSF4-211ENST00000471455 SRGNP10124 158 aa12.17□□□□□ -0.46
CPSF4-211ENST00000471455 PRKAR2BP31323 418 aa12.17□□□□□ -0.46
CPSF4-211ENST00000471455 CCDC93Q567U6 631 aa12.17□□□□□ -0.46
CPSF4-211ENST00000471455 SNRPA1P09661 255 aaKnown RBP12.16□□□□□ -0.46
CPSF4-211ENST00000471455 FAM163AQ96GL9 167 aaPredicted RBP12.16□□□□□ -0.46
CPSF4-211ENST00000471455 ST18O60284 1047 aa12.15□□□□□ -0.46
CPSF4-211ENST00000471455 NPR1P16066 1061 aa12.15□□□□□ -0.46
CPSF4-211ENST00000471455 CNGB1Q14028 1251 aaPredicted RBP12.15□□□□□ -0.46
CPSF4-211ENST00000471455 TPTE2Q6XPS3 522 aa12.15□□□□□ -0.46
CPSF4-211ENST00000471455 CCDC24Q8N4L8 307 aa12.15□□□□□ -0.46
CPSF4-211ENST00000471455 BBXQ8WY36 941 aaPredicted RBP12.15□□□□□ -0.46
CPSF4-211ENST00000471455 RSPH6AQ9H0K4 717 aa12.15□□□□□ -0.46
CPSF4-211ENST00000471455 C2orf72A6NCS6 295 aa12.14□□□□□ -0.47
CPSF4-211ENST00000471455 POTECB2RU33 542 aa12.14□□□□□ -0.47
CPSF4-211ENST00000471455 NEFMP07197 916 aa12.14□□□□□ -0.47
CPSF4-211ENST00000471455 LDHDQ86WU2 507 aa12.14□□□□□ -0.47
CPSF4-211ENST00000471455 CACNA1SQ13698 1873 aa12.13□□□□□ -0.47
CPSF4-211ENST00000471455 HTATSF1O43719 755 aaKnown RBP12.13□□□□□ -0.47
CPSF4-211ENST00000471455 DDNO94850 711 aaPredicted RBP12.13□□□□□ -0.47
CPSF4-211ENST00000471455 U2AF1L5P0DN76 240 aaPredicted RBP12.13□□□□□ -0.47
CPSF4-211ENST00000471455 U2AF1Q01081 240 aaKnown RBP eCLIP12.13□□□□□ -0.47
CPSF4-211ENST00000471455 FKBP4Q02790 459 aaKnown RBP eCLIP12.13□□□□□ -0.47
CPSF4-211ENST00000471455 RTKN2Q8IZC4 609 aa12.13□□□□□ -0.47
CPSF4-211ENST00000471455 SCN4AP35499 1836 aa12.13□□□□□ -0.47
CPSF4-211ENST00000471455 SLX4Q8IY92 1834 aa12.13□□□□□ -0.47
CPSF4-211ENST00000471455 GTF2E1P29083 439 aaPredicted RBP12.12□□□□□ -0.47
CPSF4-211ENST00000471455 ALDH1B1P30837 517 aa12.12□□□□□ -0.47
CPSF4-211ENST00000471455 PHACTR3Q96KR7 559 aa12.12□□□□□ -0.47
CPSF4-211ENST00000471455 RYDENQ9NUL5 291 aaKnown RBP12.12□□□□□ -0.47
CPSF4-211ENST00000471455 NIP7Q9Y221 180 aaKnown RBP eCLIP12.12□□□□□ -0.47
CPSF4-211ENST00000471455 USP16Q9Y5T5 823 aa12.12□□□□□ -0.47
CPSF4-211ENST00000471455 KCNQ3O43525 872 aa12.11□□□□□ -0.47
CPSF4-211ENST00000471455 PNISRQ8TF01 805 aaKnown RBP12.11□□□□□ -0.47
CPSF4-211ENST00000471455 AIDAQ96BJ3 306 aa12.11□□□□□ -0.47
CPSF4-211ENST00000471455 NYXQ9GZU5 481 aa12.11□□□□□ -0.47
CPSF4-211ENST00000471455 TAF1DQ9H5J8 278 aaPredicted RBP12.11□□□□□ -0.47
CPSF4-211ENST00000471455 MKRN1Q9UHC7 482 aaKnown RBP12.11□□□□□ -0.47
CPSF4-211ENST00000471455 CNTNAP1P78357 1384 aa12.1□□□□□ -0.47
CPSF4-211ENST00000471455 KLRG2A4D1S0 409 aaPredicted RBP12.1□□□□□ -0.47
CPSF4-211ENST00000471455 CC2D2BQ6DHV5 1058 aa12.1□□□□□ -0.47
CPSF4-211ENST00000471455 MCM10Q7L590 875 aa12.1□□□□□ -0.47
CPSF4-211ENST00000471455 PNMA8AQ86V59 439 aaPredicted RBP12.1□□□□□ -0.47
CPSF4-211ENST00000471455 C7orf43Q8WVR3 580 aa12.1□□□□□ -0.47
CPSF4-211ENST00000471455 HACL1Q9UJ83 578 aa12.1□□□□□ -0.47
CPSF4-211ENST00000471455 PIP4K2AP48426 406 aaPredicted RBP12.09□□□□□ -0.47
CPSF4-211ENST00000471455 GRIPAP1Q4V328 841 aa12.09□□□□□ -0.47
CPSF4-211ENST00000471455 EAPPQ56P03 285 aaPredicted RBP12.09□□□□□ -0.47
CPSF4-211ENST00000471455 KIF6Q6ZMV9 814 aa12.09□□□□□ -0.47
CPSF4-211ENST00000471455 JDP2Q8WYK2 163 aa12.09□□□□□ -0.47
CPSF4-211ENST00000471455 LAMB4A4D0S4 1761 aa12.09□□□□□ -0.47
CPSF4-211ENST00000471455 PASKQ96RG2 1323 aa12.09□□□□□ -0.47
CPSF4-211ENST00000471455 TMEM88BA6NKF7 163 aa12.08□□□□□ -0.48
CPSF4-211ENST00000471455 SNPHO15079 494 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms