RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 PTF1AQ7RTS3 328 aa11.61□□□□□ -0.55
VPS52-216ENST00000471309 ERC1Q8IUD2 1116 aa11.61□□□□□ -0.55
VPS52-216ENST00000471309 PLEKHM2Q8IWE5 1019 aa11.61□□□□□ -0.55
VPS52-216ENST00000471309 LINC00116Q8NCU8 138 aa11.61□□□□□ -0.55
VPS52-216ENST00000471309 BCL11BQ9C0K0 894 aaPredicted RBP11.61□□□□□ -0.55
VPS52-216ENST00000471309 RGS17Q9UGC6 210 aaPredicted RBP11.61□□□□□ -0.55
VPS52-216ENST00000471309 SALL3Q9BXA9 1300 aa11.6□□□□□ -0.55
VPS52-216ENST00000471309 SMARCA5O60264 1052 aaPredicted RBP11.6□□□□□ -0.55
VPS52-216ENST00000471309 EPHA10Q5JZY3 1008 aa11.6□□□□□ -0.55
VPS52-216ENST00000471309 FAM196AQ6ZSG2 479 aa11.6□□□□□ -0.55
VPS52-216ENST00000471309 KRT27Q7Z3Y8 459 aa11.6□□□□□ -0.55
VPS52-216ENST00000471309 RHPN1Q8TCX5 695 aa11.6□□□□□ -0.55
VPS52-216ENST00000471309 KIF1BPQ96EK5 621 aa11.6□□□□□ -0.55
VPS52-216ENST00000471309 OSBPL3Q9H4L5 887 aa11.6□□□□□ -0.55
VPS52-216ENST00000471309 CDHR2Q9BYE9 1310 aa11.6□□□□□ -0.55
VPS52-216ENST00000471309 PCCAP05165 728 aaPredicted RBP11.59□□□□□ -0.55
VPS52-216ENST00000471309 FOXO4P98177 505 aa11.59□□□□□ -0.55
VPS52-216ENST00000471309 HLFQ16534 295 aa11.59□□□□□ -0.55
VPS52-216ENST00000471309 TTC22Q5TAA0 569 aa11.59□□□□□ -0.55
VPS52-216ENST00000471309 RC3H1Q5TC82 1133 aaKnown RBP11.59□□□□□ -0.55
VPS52-216ENST00000471309 CCNL1Q9UK58 526 aaPredicted RBP11.59□□□□□ -0.55
VPS52-216ENST00000471309 C4AP0C0L4 1744 aa11.59□□□□□ -0.55
VPS52-216ENST00000471309 AOX1Q06278 1338 aa11.59□□□□□ -0.55
VPS52-216ENST00000471309 MYH3P11055 1940 aa11.58□□□□□ -0.55
VPS52-216ENST00000471309 COL24A1Q17RW2 1714 aa11.58□□□□□ -0.56
VPS52-216ENST00000471309 CAMTA2O94983 1202 aa11.58□□□□□ -0.56
VPS52-216ENST00000471309 NLRP10Q86W26 655 aa11.58□□□□□ -0.56
VPS52-216ENST00000471309 C16orf71Q8IYS4 520 aaPredicted RBP11.58□□□□□ -0.56
VPS52-216ENST00000471309 ZNF34Q8IZ26 560 aa11.58□□□□□ -0.56
VPS52-216ENST00000471309 ZBTB38Q8NAP3 1195 aaPredicted RBP11.58□□□□□ -0.56
VPS52-216ENST00000471309 OTUD7AQ8TE49 926 aaPredicted RBP11.58□□□□□ -0.56
VPS52-216ENST00000471309 ARXQ96QS3 562 aa11.58□□□□□ -0.56
VPS52-216ENST00000471309 PLA2G12BQ9BX93 195 aa11.58□□□□□ -0.56
VPS52-216ENST00000471309 COPRSQ9NQ92 184 aa11.58□□□□□ -0.56
VPS52-216ENST00000471309 TBC1D2BQ9UPU7 963 aa11.58□□□□□ -0.56
VPS52-216ENST00000471309 LRP5O75197 1615 aa11.57□□□□□ -0.56
VPS52-216ENST00000471309 RGPD3A6NKT7 1758 aaPredicted RBP11.57□□□□□ -0.56
VPS52-216ENST00000471309 RGPD4Q7Z3J3 1758 aa11.57□□□□□ -0.56
VPS52-216ENST00000471309 GSPT1P15170 499 aaKnown RBP11.57□□□□□ -0.56
VPS52-216ENST00000471309 MX1P20591 662 aa11.57□□□□□ -0.56
VPS52-216ENST00000471309 RFX5P48382 616 aaPredicted RBP11.57□□□□□ -0.56
VPS52-216ENST00000471309 PDE1AP54750 535 aa11.57□□□□□ -0.56
VPS52-216ENST00000471309 OS9Q13438 667 aaPredicted RBP11.57□□□□□ -0.56
VPS52-216ENST00000471309 JARID2Q92833 1246 aaPredicted RBP11.57□□□□□ -0.56
VPS52-216ENST00000471309 STAP2Q9UGK3 403 aa11.57□□□□□ -0.56
VPS52-216ENST00000471309 ZNF652Q9Y2D9 606 aa11.57□□□□□ -0.56
VPS52-216ENST00000471309 DDX60Q8IY21 1712 aaKnown RBP11.57□□□□□ -0.56
VPS52-216ENST00000471309 TNS1Q9HBL0 1735 aaKnown RBP11.57□□□□□ -0.56
VPS52-216ENST00000471309 UBN2Q6ZU65 1347 aa11.57□□□□□ -0.56
VPS52-216ENST00000471309 ZBTB22O15209 634 aa11.56□□□□□ -0.56
VPS52-216ENST00000471309 GPTP24298 496 aa11.56□□□□□ -0.56
VPS52-216ENST00000471309 POTEAQ6S8J7 498 aa11.56□□□□□ -0.56
VPS52-216ENST00000471309 LMBR1LQ6UX01 489 aa11.56□□□□□ -0.56
VPS52-216ENST00000471309 PA2G4Q9UQ80 394 aaKnown RBP11.56□□□□□ -0.56
VPS52-216ENST00000471309 USP42Q9H9J4 1324 aaKnown RBP11.56□□□□□ -0.56
VPS52-216ENST00000471309 UBR3Q6ZT12 1888 aa11.55□□□□□ -0.56
VPS52-216ENST00000471309 RPS6KA4O75676 772 aa11.55□□□□□ -0.56
VPS52-216ENST00000471309 PTPN12Q05209 780 aaKnown RBP11.55□□□□□ -0.56
VPS52-216ENST00000471309 G3BP1Q13283 466 aaKnown RBP eCLIP11.55□□□□□ -0.56
VPS52-216ENST00000471309 PARP10Q53GL7 1025 aa11.55□□□□□ -0.56
VPS52-216ENST00000471309 CLEC4GQ6UXB4 293 aa11.55□□□□□ -0.56
VPS52-216ENST00000471309 CLASRPQ8N2M8 674 aaKnown RBP11.55□□□□□ -0.56
VPS52-216ENST00000471309 AK7Q96M32 723 aa11.55□□□□□ -0.56
VPS52-216ENST00000471309 IL1RAPL2Q9NP60 686 aa11.55□□□□□ -0.56
VPS52-216ENST00000471309 CDC45O75419 566 aa11.54□□□□□ -0.56
VPS52-216ENST00000471309 SASH1O94885 1247 aa11.54□□□□□ -0.56
VPS52-216ENST00000471309 RXRBP28702 533 aa11.54□□□□□ -0.56
VPS52-216ENST00000471309 ANP32AP39687 249 aaKnown RBP11.54□□□□□ -0.56
VPS52-216ENST00000471309 RTL5Q5HYW3 569 aaPredicted RBP11.54□□□□□ -0.56
VPS52-216ENST00000471309 SLC27A3Q5K4L6 730 aa11.54□□□□□ -0.56
VPS52-216ENST00000471309 FAM89AQ96GI7 184 aa11.54□□□□□ -0.56
VPS52-216ENST00000471309 TTC41PQ6P2S7 1318 aa11.54□□□□□ -0.56
VPS52-216ENST00000471309 GNPATO15228 680 aa11.53□□□□□ -0.56
VPS52-216ENST00000471309 EIF5BO60841 1220 aaKnown RBP11.53□□□□□ -0.56
VPS52-216ENST00000471309 CIAO1O76071 339 aa11.53□□□□□ -0.56
VPS52-216ENST00000471309 CSF1RP07333 972 aa11.53□□□□□ -0.56
VPS52-216ENST00000471309 HMGB2P26583 209 aaKnown RBP11.53□□□□□ -0.56
VPS52-216ENST00000471309 KCNQ4P56696 695 aa11.53□□□□□ -0.56
VPS52-216ENST00000471309 KLHDC4Q8TBB5 520 aa11.53□□□□□ -0.56
VPS52-216ENST00000471309 UPF2Q9HAU5 1272 aaKnown RBP11.53□□□□□ -0.56
VPS52-216ENST00000471309 NARFQ9UHQ1 456 aa11.53□□□□□ -0.56
VPS52-216ENST00000471309 TRMT112Q9UI30 125 aaKnown RBP11.53□□□□□ -0.56
VPS52-216ENST00000471309 FBXO3Q9UK99 471 aa11.53□□□□□ -0.56
VPS52-216ENST00000471309 CASZ1Q86V15 1759 aa11.53□□□□□ -0.56
VPS52-216ENST00000471309 SH3TC1Q8TE82 1336 aa11.53□□□□□ -0.56
VPS52-216ENST00000471309 SEC24BO95487 1268 aa11.52□□□□□ -0.57
VPS52-216ENST00000471309 SDSP20132 328 aa11.52□□□□□ -0.57
VPS52-216ENST00000471309 CTSWP56202 376 aa11.52□□□□□ -0.57
VPS52-216ENST00000471309 NUTM1Q86Y26 1132 aa11.52□□□□□ -0.57
VPS52-216ENST00000471309 PI4K2BQ8TCG2 481 aa11.52□□□□□ -0.57
VPS52-216ENST00000471309 GPATCH3Q96I76 525 aa11.52□□□□□ -0.57
VPS52-216ENST00000471309 UTP14AQ9BVJ6 771 aaKnown RBP11.52□□□□□ -0.57
VPS52-216ENST00000471309 BCL11AQ9H165 835 aa11.52□□□□□ -0.57
VPS52-216ENST00000471309 SIL1Q9H173 461 aa11.52□□□□□ -0.57
VPS52-216ENST00000471309 NIP7Q9Y221 180 aaKnown RBP eCLIP11.52□□□□□ -0.57
VPS52-216ENST00000471309 CHMP3Q9Y3E7 222 aa11.52□□□□□ -0.57
VPS52-216ENST00000471309 RTCBQ9Y3I0 505 aaKnown RBP11.52□□□□□ -0.57
VPS52-216ENST00000471309 AK9Q5TCS8 1911 aa11.52□□□□□ -0.57
VPS52-216ENST00000471309 IRS4O14654 1257 aaPredicted RBP11.51□□□□□ -0.57
VPS52-216ENST00000471309 PDE8AO60658 829 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms