RNA–Protein interactions for RNA: ENST00000470458.1

RFTN1-208, Transcript of raftlin, lipid raft linker 1, human

TSL 4

Gene RFTN1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFTN1-208	ENST00000470458	HOXA10	P31260	410 aa	Predicted RBP	13.94	□□□□□ -0.18
RFTN1-208	ENST00000470458	KRT24	Q2M2I5	525 aa		13.94	□□□□□ -0.18
RFTN1-208	ENST00000470458	PROSER3	Q2NL68	480 aa		13.94	□□□□□ -0.18
RFTN1-208	ENST00000470458	CRY2	Q49AN0	593 aa		13.94	□□□□□ -0.18
RFTN1-208	ENST00000470458	CCDC93	Q567U6	631 aa		13.94	□□□□□ -0.18
RFTN1-208	ENST00000470458	SUSD4	Q5VX71	490 aa		13.94	□□□□□ -0.18
RFTN1-208	ENST00000470458	PRPF40B	Q6NWY9	871 aa	Known RBP	13.94	□□□□□ -0.18
RFTN1-208	ENST00000470458	C8orf58	Q8NAV2	365 aa		13.94	□□□□□ -0.18
RFTN1-208	ENST00000470458	ZNF428	Q96B54	188 aa		13.94	□□□□□ -0.18
RFTN1-208	ENST00000470458	WWC3	Q9ULE0	1092 aa		13.94	□□□□□ -0.18
RFTN1-208	ENST00000470458	BBOX1	O75936	387 aa		13.93	□□□□□ -0.18
RFTN1-208	ENST00000470458	NTSR2	O95665	410 aa		13.93	□□□□□ -0.18
RFTN1-208	ENST00000470458	ERFE	Q4G0M1	354 aa		13.93	□□□□□ -0.18
RFTN1-208	ENST00000470458	DPY19L2	Q6NUT2	758 aa		13.93	□□□□□ -0.18
RFTN1-208	ENST00000470458	NLRP10	Q86W26	655 aa		13.93	□□□□□ -0.18
RFTN1-208	ENST00000470458	CCDC191	Q8NCU4	936 aa		13.93	□□□□□ -0.18
RFTN1-208	ENST00000470458	TAOK3	Q9H2K8	898 aa		13.93	□□□□□ -0.18
RFTN1-208	ENST00000470458	SBF1	O95248	1867 aa		13.93	□□□□□ -0.18
RFTN1-208	ENST00000470458		E9PSI1	815 aa		13.92	□□□□□ -0.18
RFTN1-208	ENST00000470458	C21orf2	O43822	256 aa		13.92	□□□□□ -0.18
RFTN1-208	ENST00000470458	ANXA1	P04083	346 aa		13.92	□□□□□ -0.18
RFTN1-208	ENST00000470458	C9orf131	Q5VYM1	1079 aa		13.92	□□□□□ -0.18
RFTN1-208	ENST00000470458	DIEXF	Q68CQ4	756 aa	Known RBP	13.92	□□□□□ -0.18
RFTN1-208	ENST00000470458	KSR2	Q6VAB6	950 aa		13.92	□□□□□ -0.18
RFTN1-208	ENST00000470458	ISCA1	Q9BUE6	129 aa		13.92	□□□□□ -0.18
RFTN1-208	ENST00000470458	VPS33B	Q9H267	617 aa		13.92	□□□□□ -0.18
RFTN1-208	ENST00000470458	RNF181	Q9P0P0	153 aa		13.92	□□□□□ -0.18
RFTN1-208	ENST00000470458	FANCI	Q9NVI1	1328 aa		13.91	□□□□□ -0.18
RFTN1-208	ENST00000470458	SLC4A2	P04920	1241 aa		13.91	□□□□□ -0.18
RFTN1-208	ENST00000470458	DDX46	Q7L014	1031 aa	Known RBP	13.91	□□□□□ -0.18
RFTN1-208	ENST00000470458	NUTM1	Q86Y26	1132 aa		13.91	□□□□□ -0.18
RFTN1-208	ENST00000470458	TSR2	Q969E8	191 aa	Known RBP	13.91	□□□□□ -0.18
RFTN1-208	ENST00000470458	SALL2	Q9Y467	1007 aa	Predicted RBP	13.91	□□□□□ -0.18
RFTN1-208	ENST00000470458	ADCY9	O60503	1353 aa		13.91	□□□□□ -0.18
RFTN1-208	ENST00000470458	UBN2	Q6ZU65	1347 aa		13.9	□□□□□ -0.18
RFTN1-208	ENST00000470458	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.9	□□□□□ -0.18
RFTN1-208	ENST00000470458	SUPT20H	Q8NEM7	779 aa		13.9	□□□□□ -0.18
RFTN1-208	ENST00000470458	METTL22	Q9BUU2	404 aa	Predicted RBP	13.9	□□□□□ -0.18
RFTN1-208	ENST00000470458	CWC25	Q9NXE8	425 aa	Predicted RBP	13.9	□□□□□ -0.18
RFTN1-208	ENST00000470458	DICER1	Q9UPY3	1922 aa	Known RBP	13.9	□□□□□ -0.18
RFTN1-208	ENST00000470458	FER1L6	Q2WGJ9	1857 aa		13.89	□□□□□ -0.19
RFTN1-208	ENST00000470458	CCDC88A	Q3V6T2	1871 aa		13.89	□□□□□ -0.19
RFTN1-208	ENST00000470458	VAMP4	O75379	141 aa		13.89	□□□□□ -0.19
RFTN1-208	ENST00000470458	CT47B1	P0C2W7	299 aa	Predicted RBP	13.89	□□□□□ -0.19
RFTN1-208	ENST00000470458	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.89	□□□□□ -0.19
RFTN1-208	ENST00000470458	CCDC24	Q8N4L8	307 aa		13.89	□□□□□ -0.19
RFTN1-208	ENST00000470458	SLX4	Q8IY92	1834 aa		13.88	□□□□□ -0.19
RFTN1-208	ENST00000470458	UTRN	P46939	3433 aa		13.88	□□□□□ -0.19
RFTN1-208	ENST00000470458	COL11A2	P13942	1736 aa	Predicted RBP	13.88	□□□□□ -0.19
RFTN1-208	ENST00000470458	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.88	□□□□□ -0.19
RFTN1-208	ENST00000470458	EXOSC9	Q06265	439 aa	Known RBP	13.88	□□□□□ -0.19
RFTN1-208	ENST00000470458	TSPYL6	Q8N831	410 aa		13.88	□□□□□ -0.19
RFTN1-208	ENST00000470458	PSMD1	Q99460	953 aa		13.88	□□□□□ -0.19
RFTN1-208	ENST00000470458	CACNA1S	Q13698	1873 aa		13.88	□□□□□ -0.19
RFTN1-208	ENST00000470458	PCCA	P05165	728 aa	Predicted RBP	13.87	□□□□□ -0.19
RFTN1-208	ENST00000470458	FKBP5	Q13451	457 aa	Predicted RBP	13.87	□□□□□ -0.19
RFTN1-208	ENST00000470458	SF3B3	Q15393	1217 aa	Known RBP	13.87	□□□□□ -0.19
RFTN1-208	ENST00000470458	C7orf43	Q8WVR3	580 aa		13.87	□□□□□ -0.19
RFTN1-208	ENST00000470458	JDP2	Q8WYK2	163 aa		13.87	□□□□□ -0.19
RFTN1-208	ENST00000470458	PHAX	Q9H814	394 aa	Known RBP	13.87	□□□□□ -0.19
RFTN1-208	ENST00000470458	MAP3K2	Q9Y2U5	619 aa		13.87	□□□□□ -0.19
RFTN1-208	ENST00000470458	PI4KAP2	A4QPH2	592 aa		13.86	□□□□□ -0.19
RFTN1-208	ENST00000470458	PPEF1	O14829	653 aa	Predicted RBP	13.86	□□□□□ -0.19
RFTN1-208	ENST00000470458	FLII	Q13045	1269 aa		13.86	□□□□□ -0.19
RFTN1-208	ENST00000470458	CCDC152	Q4G0S7	254 aa		13.86	□□□□□ -0.19
RFTN1-208	ENST00000470458	SP8	Q8IXZ3	490 aa		13.86	□□□□□ -0.19
RFTN1-208	ENST00000470458	PI4KAP1	Q8N8J0	262 aa		13.86	□□□□□ -0.19
RFTN1-208	ENST00000470458	MYD88	Q99836	296 aa		13.86	□□□□□ -0.19
RFTN1-208	ENST00000470458	ATP6V0A2	Q9Y487	856 aa		13.86	□□□□□ -0.19
RFTN1-208	ENST00000470458	GOLGB1	Q14789	3259 aa	Known RBP	13.86	□□□□□ -0.19
RFTN1-208	ENST00000470458	ZNF521	Q96K83	1311 aa		13.86	□□□□□ -0.19
RFTN1-208	ENST00000470458	GLTPD2	A6NH11	291 aa		13.85	□□□□□ -0.19
RFTN1-208	ENST00000470458	ATP5J2-PTCD1	G3V325	749 aa		13.85	□□□□□ -0.19
RFTN1-208	ENST00000470458	IRS4	O14654	1257 aa	Predicted RBP	13.85	□□□□□ -0.19
RFTN1-208	ENST00000470458	PDE8A	O60658	829 aa		13.85	□□□□□ -0.19
RFTN1-208	ENST00000470458	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.85	□□□□□ -0.19
RFTN1-208	ENST00000470458	ABCC12	Q96J65	1359 aa		13.84	□□□□□ -0.19
RFTN1-208	ENST00000470458	NFKBIE	O00221	500 aa		13.84	□□□□□ -0.19
RFTN1-208	ENST00000470458	VEGFA	P15692	232 aa	Predicted RBP	13.84	□□□□□ -0.19
RFTN1-208	ENST00000470458	C1QTNF8	P60827	252 aa		13.84	□□□□□ -0.19
RFTN1-208	ENST00000470458	GRAP	Q13588	217 aa		13.84	□□□□□ -0.19
RFTN1-208	ENST00000470458	LINS1	Q8NG48	757 aa		13.84	□□□□□ -0.19
RFTN1-208	ENST00000470458	GRAPL	Q8TC17	118 aa	Predicted RBP	13.84	□□□□□ -0.19
RFTN1-208	ENST00000470458	DNAAF4	Q8WXU2	420 aa		13.84	□□□□□ -0.19
RFTN1-208	ENST00000470458	FAM89A	Q96GI7	184 aa		13.84	□□□□□ -0.19
RFTN1-208	ENST00000470458	CDHR2	Q9BYE9	1310 aa		13.84	□□□□□ -0.19
RFTN1-208	ENST00000470458	TOMM70	O94826	608 aa		13.83	□□□□□ -0.2
RFTN1-208	ENST00000470458	HCLS1	P14317	486 aa	Predicted RBP	13.83	□□□□□ -0.2
RFTN1-208	ENST00000470458	SYNE4	Q8N205	404 aa		13.83	□□□□□ -0.2
RFTN1-208	ENST00000470458	IQCA1L	A6NCM1	817 aa		13.82	□□□□□ -0.2
RFTN1-208	ENST00000470458	IARS	P41252	1262 aa	Known RBP	13.82	□□□□□ -0.2
RFTN1-208	ENST00000470458	SLFN5	Q08AF3	891 aa		13.82	□□□□□ -0.2
RFTN1-208	ENST00000470458	ALDH1L2	Q3SY69	923 aa		13.82	□□□□□ -0.2
RFTN1-208	ENST00000470458	ZNF526	Q8TF50	670 aa	Predicted RBP	13.82	□□□□□ -0.2
RFTN1-208	ENST00000470458	CDC5L	Q99459	802 aa	Known RBP	13.82	□□□□□ -0.2
RFTN1-208	ENST00000470458	HDAC5	Q9UQL6	1122 aa		13.82	□□□□□ -0.2
RFTN1-208	ENST00000470458	PTPRC	P08575	1304 aa		13.82	□□□□□ -0.2
RFTN1-208	ENST00000470458	TNRC6C	Q9HCJ0	1690 aa	Known RBP	13.82	□□□□□ -0.2
RFTN1-208	ENST00000470458	EIF6	P56537	245 aa	Known RBP	13.81	□□□□□ -0.2
RFTN1-208	ENST00000470458	RPS8	P62241	208 aa	Known RBP	13.81	□□□□□ -0.2

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