RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 EXOC6Q8TAG9 804 aa7.57□□□□□ -1.2
USP39-213ENST00000467885 METTL22Q9BUU2 404 aaPredicted RBP7.57□□□□□ -1.2
USP39-213ENST00000467885 MAP3K2Q9Y2U5 619 aa7.57□□□□□ -1.2
USP39-213ENST00000467885 COG6Q9Y2V7 657 aa7.57□□□□□ -1.2
USP39-213ENST00000467885 KIF16BQ96L93 1317 aa7.56□□□□□ -1.2
USP39-213ENST00000467885 CNTNAP4Q9C0A0 1308 aa7.56□□□□□ -1.2
USP39-213ENST00000467885 IGKV5-2P06315 115 aa7.56□□□□□ -1.2
USP39-213ENST00000467885 HMGB2P26583 209 aaKnown RBP7.56□□□□□ -1.2
USP39-213ENST00000467885 TCIRG1Q13488 830 aa7.56□□□□□ -1.2
USP39-213ENST00000467885 TRAPPC3LQ5T215 181 aa7.56□□□□□ -1.2
USP39-213ENST00000467885 RIC3Q7Z5B4 369 aa7.56□□□□□ -1.2
USP39-213ENST00000467885 DNAAF4Q8WXU2 420 aa7.56□□□□□ -1.2
USP39-213ENST00000467885 CRBNQ96SW2 442 aa7.56□□□□□ -1.2
USP39-213ENST00000467885 USP44Q9H0E7 712 aa7.56□□□□□ -1.2
USP39-213ENST00000467885 BCL2L12Q9HB09 334 aa7.56□□□□□ -1.2
USP39-213ENST00000467885 ZBTB40Q9NUA8 1239 aa7.56□□□□□ -1.2
USP39-213ENST00000467885 BRWD3Q6RI45 1802 aa7.56□□□□□ -1.2
USP39-213ENST00000467885 ADCY9O60503 1353 aa7.56□□□□□ -1.2
USP39-213ENST00000467885 ABCC4O15439 1325 aa7.55□□□□□ -1.2
USP39-213ENST00000467885 ITGB4P16144 1822 aa7.55□□□□□ -1.2
USP39-213ENST00000467885 WNK3Q9BYP7 1800 aa7.55□□□□□ -1.2
USP39-213ENST00000467885 CAMTA2O94983 1202 aa7.55□□□□□ -1.2
USP39-213ENST00000467885 DDX58O95786 925 aaKnown RBP7.55□□□□□ -1.2
USP39-213ENST00000467885 MVPQ14764 893 aaKnown RBP7.55□□□□□ -1.2
USP39-213ENST00000467885 DPY19L2Q6NUT2 758 aa7.55□□□□□ -1.2
USP39-213ENST00000467885 SLC4A10Q6U841 1118 aa7.55□□□□□ -1.2
USP39-213ENST00000467885 GIGYF2Q6Y7W6 1299 aaKnown RBP7.55□□□□□ -1.2
USP39-213ENST00000467885 DZIP3Q86Y13 1208 aaKnown RBP7.55□□□□□ -1.2
USP39-213ENST00000467885 ZNF34Q8IZ26 560 aa7.55□□□□□ -1.2
USP39-213ENST00000467885 LINS1Q8NG48 757 aa7.55□□□□□ -1.2
USP39-213ENST00000467885 HS3ST6Q96QI5 342 aa7.55□□□□□ -1.2
USP39-213ENST00000467885 ISCA1Q9BUE6 129 aa7.55□□□□□ -1.2
USP39-213ENST00000467885 KRTAP3-3Q9BYR6 98 aa7.55□□□□□ -1.2
USP39-213ENST00000467885 KRTAP3-2Q9BYR7 98 aa7.55□□□□□ -1.2
USP39-213ENST00000467885 RTCBQ9Y3I0 505 aaKnown RBP7.55□□□□□ -1.2
USP39-213ENST00000467885 KDM3BQ7LBC6 1761 aa7.55□□□□□ -1.2
USP39-213ENST00000467885 MAP3K15Q6ZN16 1313 aa7.54□□□□□ -1.2
USP39-213ENST00000467885 A0A087WZG4 1122 aa7.54□□□□□ -1.2
USP39-213ENST00000467885 FAM205CA6NFA0 338 aa7.54□□□□□ -1.2
USP39-213ENST00000467885 ATP5J2-PTCD1G3V325 749 aa7.54□□□□□ -1.2
USP39-213ENST00000467885 H7C1W4 665 aa7.54□□□□□ -1.2
USP39-213ENST00000467885 GNPATO15228 680 aa7.54□□□□□ -1.2
USP39-213ENST00000467885 ALDH1L1O75891 902 aa7.54□□□□□ -1.2
USP39-213ENST00000467885 BAG6P46379 1132 aa7.54□□□□□ -1.2
USP39-213ENST00000467885 CCT4P50991 539 aaKnown RBP7.54□□□□□ -1.2
USP39-213ENST00000467885 PDAP1Q13442 181 aaKnown RBP7.54□□□□□ -1.2
USP39-213ENST00000467885 ZNF827Q17R98 1081 aa7.54□□□□□ -1.2
USP39-213ENST00000467885 ERICH6BQ5W0A0 696 aa7.54□□□□□ -1.2
USP39-213ENST00000467885 CLEC4GQ6UXB4 293 aa7.54□□□□□ -1.2
USP39-213ENST00000467885 COL23A1Q86Y22 540 aaPredicted RBP7.54□□□□□ -1.2
USP39-213ENST00000467885 ARXQ96QS3 562 aa7.54□□□□□ -1.2
USP39-213ENST00000467885 ZBTB3Q9H5J0 574 aa7.54□□□□□ -1.2
USP39-213ENST00000467885 NARFQ9UHQ1 456 aa7.54□□□□□ -1.2
USP39-213ENST00000467885 GTF3C3Q9Y5Q9 886 aa7.54□□□□□ -1.2
USP39-213ENST00000467885 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.53□□□□□ -1.2
USP39-213ENST00000467885 NEURL1BA8MQ27 555 aa7.53□□□□□ -1.2
USP39-213ENST00000467885 RGL2O15211 777 aa7.53□□□□□ -1.2
USP39-213ENST00000467885 TM4SF1P30408 202 aa7.53□□□□□ -1.2
USP39-213ENST00000467885 SF3B2Q13435 895 aaKnown RBP7.53□□□□□ -1.2
USP39-213ENST00000467885 GCKRQ14397 625 aa7.53□□□□□ -1.2
USP39-213ENST00000467885 SLC15A2Q16348 729 aa7.53□□□□□ -1.2
USP39-213ENST00000467885 CWF19L2Q2TBE0 894 aaKnown RBP7.53□□□□□ -1.2
USP39-213ENST00000467885 MYD88Q99836 296 aa7.53□□□□□ -1.2
USP39-213ENST00000467885 SRCIN1Q9C0H9 1055 aa7.53□□□□□ -1.2
USP39-213ENST00000467885 SRP68Q9UHB9 627 aaKnown RBP7.53□□□□□ -1.2
USP39-213ENST00000467885 ZNF330Q9Y3S2 320 aaPredicted RBP7.53□□□□□ -1.2
USP39-213ENST00000467885 PCDHB15Q9Y5E8 787 aa7.53□□□□□ -1.2
USP39-213ENST00000467885 UTYO14607 1347 aa7.52□□□□□ -1.2
USP39-213ENST00000467885 KAT6BQ8WYB5 2073 aa7.52□□□□□ -1.21
USP39-213ENST00000467885 NBPF7P0C2Y1 421 aaPredicted RBP7.52□□□□□ -1.21
USP39-213ENST00000467885 SSFA2P28290 1259 aa7.52□□□□□ -1.21
USP39-213ENST00000467885 RFC4P35249 363 aa7.52□□□□□ -1.21
USP39-213ENST00000467885 CASP7P55210 303 aa7.52□□□□□ -1.21
USP39-213ENST00000467885 AAMPQ13685 434 aa7.52□□□□□ -1.21
USP39-213ENST00000467885 SUSD4Q5VX71 490 aa7.52□□□□□ -1.21
USP39-213ENST00000467885 USPL1Q5W0Q7 1092 aa7.52□□□□□ -1.21
USP39-213ENST00000467885 NLRP10Q86W26 655 aa7.52□□□□□ -1.21
USP39-213ENST00000467885 SIRT2Q8IXJ6 389 aa7.52□□□□□ -1.21
USP39-213ENST00000467885 FTSJ3Q8IY81 847 aaKnown RBP7.52□□□□□ -1.21
USP39-213ENST00000467885 SYNE4Q8N205 404 aa7.52□□□□□ -1.21
USP39-213ENST00000467885 CCDC191Q8NCU4 936 aa7.52□□□□□ -1.21
USP39-213ENST00000467885 JARID2Q92833 1246 aaPredicted RBP7.52□□□□□ -1.21
USP39-213ENST00000467885 KAZALD1Q96I82 304 aa7.52□□□□□ -1.21
USP39-213ENST00000467885 AK7Q96M32 723 aa7.52□□□□□ -1.21
USP39-213ENST00000467885 MEIS3Q99687 375 aa7.52□□□□□ -1.21
USP39-213ENST00000467885 TFCP2L1Q9NZI6 479 aa7.52□□□□□ -1.21
USP39-213ENST00000467885 DDX19BQ9UMR2 479 aa7.52□□□□□ -1.21
USP39-213ENST00000467885 DOT1LQ8TEK3 1739 aa7.52□□□□□ -1.21
USP39-213ENST00000467885 PAPPAQ13219 1627 aa7.52□□□□□ -1.21
USP39-213ENST00000467885 UBR2Q8IWV8 1755 aa7.51□□□□□ -1.21
USP39-213ENST00000467885 EP400Q96L91 3159 aa7.51□□□□□ -1.21
USP39-213ENST00000467885 NHSQ6T4R5 1651 aa7.51□□□□□ -1.21
USP39-213ENST00000467885 SBF2Q86WG5 1849 aa7.51□□□□□ -1.21
USP39-213ENST00000467885 IGHDP01880 384 aa7.51□□□□□ -1.21
USP39-213ENST00000467885 GYS1P13807 737 aa7.51□□□□□ -1.21
USP39-213ENST00000467885 TBC1D9BQ66K14 1250 aa7.51□□□□□ -1.21
USP39-213ENST00000467885 KIF6Q6ZMV9 814 aa7.51□□□□□ -1.21
USP39-213ENST00000467885 NPM2Q86SE8 214 aaKnown RBP7.51□□□□□ -1.21
USP39-213ENST00000467885 ITPRIPQ8IWB1 547 aa7.51□□□□□ -1.21
USP39-213ENST00000467885 FLAD1Q8NFF5 587 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 136.9 ms