RNA–Protein interactions for RNA: ENST00000463147.1

USH2A-203, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 618 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-203ENST00000463147 GAS2L2Q8NHY3 880 aa8.53□□□□□ -1.04
USH2A-203ENST00000463147 USP21Q9UK80 565 aa8.53□□□□□ -1.04
USH2A-203ENST00000463147 SLC6A14Q9UN76 642 aa8.53□□□□□ -1.04
USH2A-203ENST00000463147 HCN4Q9Y3Q4 1203 aa8.53□□□□□ -1.04
USH2A-203ENST00000463147 SH3PXD2AQ5TCZ1 1133 aa8.52□□□□□ -1.05
USH2A-203ENST00000463147 TP53INP1Q96A56 240 aa8.52□□□□□ -1.05
USH2A-203ENST00000463147 HSH2DQ96JZ2 352 aa8.52□□□□□ -1.05
USH2A-203ENST00000463147 PNMA5Q96PV4 448 aa8.52□□□□□ -1.05
USH2A-203ENST00000463147 TSPAN10Q9H1Z9 355 aaPredicted RBP8.52□□□□□ -1.05
USH2A-203ENST00000463147 COG6Q9Y2V7 657 aa8.52□□□□□ -1.05
USH2A-203ENST00000463147 PALM3A6NDB9 673 aaPredicted RBP8.51□□□□□ -1.05
USH2A-203ENST00000463147 TBC1D8BQ0IIM8 1120 aa8.51□□□□□ -1.05
USH2A-203ENST00000463147 FMR1NBQ8N0W7 255 aaPredicted RBP8.51□□□□□ -1.05
USH2A-203ENST00000463147 ZBTB7BO15156 539 aaPredicted RBP8.5□□□□□ -1.05
USH2A-203ENST00000463147 HYAL3O43820 417 aaPredicted RBP8.5□□□□□ -1.05
USH2A-203ENST00000463147 RGS9O75916 674 aaPredicted RBP8.5□□□□□ -1.05
USH2A-203ENST00000463147 IER5Q5VY09 327 aa8.5□□□□□ -1.05
USH2A-203ENST00000463147 BTLAQ7Z6A9 289 aa8.5□□□□□ -1.05
USH2A-203ENST00000463147 SLC51AQ86UW1 340 aa8.5□□□□□ -1.05
USH2A-203ENST00000463147 DEPDC4Q8N2C3 294 aa8.5□□□□□ -1.05
USH2A-203ENST00000463147 RAD21O60216 631 aa8.49□□□□□ -1.05
USH2A-203ENST00000463147 PPP1R12BO60237 982 aaPredicted RBP8.49□□□□□ -1.05
USH2A-203ENST00000463147 EPB42P16452 691 aa8.49□□□□□ -1.05
USH2A-203ENST00000463147 AFF1P51825 1210 aaKnown RBP8.49□□□□□ -1.05
USH2A-203ENST00000463147 PSAPL1Q6NUJ1 521 aa8.49□□□□□ -1.05
USH2A-203ENST00000463147 IGFLR1Q9H665 355 aa8.49□□□□□ -1.05
USH2A-203ENST00000463147 ALDH16A1Q8IZ83 802 aa8.48□□□□□ -1.05
USH2A-203ENST00000463147 ZNF280CQ8ND82 737 aa8.48□□□□□ -1.05
USH2A-203ENST00000463147 NUDT8Q8WV74 236 aa8.48□□□□□ -1.05
USH2A-203ENST00000463147 SSBP4Q9BWG4 385 aaPredicted RBP8.48□□□□□ -1.05
USH2A-203ENST00000463147 DNAJB12Q9NXW2 375 aaKnown RBP8.48□□□□□ -1.05
USH2A-203ENST00000463147 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.48□□□□□ -1.05
USH2A-203ENST00000463147 USP17L3A6NCW0 530 aa8.47□□□□□ -1.05
USH2A-203ENST00000463147 USP17L4A6NCW7 530 aa8.47□□□□□ -1.05
USH2A-203ENST00000463147 CCINQ13939 588 aa8.47□□□□□ -1.05
USH2A-203ENST00000463147 USP17L2Q6R6M4 530 aa8.47□□□□□ -1.05
USH2A-203ENST00000463147 USP17L1Q7RTZ2 530 aa8.47□□□□□ -1.05
USH2A-203ENST00000463147 SIX5Q8N196 739 aa8.47□□□□□ -1.05
USH2A-203ENST00000463147 OGFOD1Q8N543 542 aa8.47□□□□□ -1.05
USH2A-203ENST00000463147 GSX2Q9BZM3 304 aa8.47□□□□□ -1.05
USH2A-203ENST00000463147 C11orf16Q9NQ32 467 aa8.47□□□□□ -1.05
USH2A-203ENST00000463147 FRRS1LQ9P0K9 344 aa8.47□□□□□ -1.05
USH2A-203ENST00000463147 RNF112Q9ULX5 631 aa8.47□□□□□ -1.05
USH2A-203ENST00000463147 GTF3C3Q9Y5Q9 886 aa8.47□□□□□ -1.05
USH2A-203ENST00000463147 LCE3BQ5TA77 95 aa8.46□□□□□ -1.06
USH2A-203ENST00000463147 MSL1Q68DK7 614 aa8.46□□□□□ -1.06
USH2A-203ENST00000463147 SHISA2Q6UWI4 295 aa8.46□□□□□ -1.06
USH2A-203ENST00000463147 ILDR2Q71H61 639 aa8.46□□□□□ -1.06
USH2A-203ENST00000463147 DMRTC2Q8IXT2 367 aaPredicted RBP8.46□□□□□ -1.06
USH2A-203ENST00000463147 KRTAP4-12Q9BQ66 201 aa8.46□□□□□ -1.06
USH2A-203ENST00000463147 ATAD2Q6PL18 1390 aa8.46□□□□□ -1.06
USH2A-203ENST00000463147 ATP9BO43861 1147 aa8.45□□□□□ -1.06
USH2A-203ENST00000463147 ARID4AP29374 1257 aaPredicted RBP8.45□□□□□ -1.06
USH2A-203ENST00000463147 CLDN10P78369 228 aa8.45□□□□□ -1.06
USH2A-203ENST00000463147 FBXO11Q86XK2 927 aa8.45□□□□□ -1.06
USH2A-203ENST00000463147 C2orf49Q9BVC5 232 aaPredicted RBP8.45□□□□□ -1.06
USH2A-203ENST00000463147 KIAA1024Q9UPX6 916 aa8.45□□□□□ -1.06
USH2A-203ENST00000463147 TGFBR3LH3BV60 316 aa8.44□□□□□ -1.06
USH2A-203ENST00000463147 RTN1Q16799 776 aa8.44□□□□□ -1.06
USH2A-203ENST00000463147 IGF2-ASQ6U949 168 aa8.44□□□□□ -1.06
USH2A-203ENST00000463147 TTC9Q92623 222 aa8.44□□□□□ -1.06
USH2A-203ENST00000463147 MKRN1Q9UHC7 482 aaKnown RBP8.44□□□□□ -1.06
USH2A-203ENST00000463147 BTBD11A6QL63 1104 aa8.43□□□□□ -1.06
USH2A-203ENST00000463147 MAP3K6O95382 1288 aa8.43□□□□□ -1.06
USH2A-203ENST00000463147 FAM35AQ86V20 835 aa8.43□□□□□ -1.06
USH2A-203ENST00000463147 DCAF11Q8TEB1 546 aa8.43□□□□□ -1.06
USH2A-203ENST00000463147 WFDC12Q8WWY7 111 aa8.43□□□□□ -1.06
USH2A-203ENST00000463147 NFKB1P19838 968 aa8.42□□□□□ -1.06
USH2A-203ENST00000463147 WFDC8Q8IUA0 241 aa8.42□□□□□ -1.06
USH2A-203ENST00000463147 TSEN2Q8NCE0 465 aaKnown RBP8.42□□□□□ -1.06
USH2A-203ENST00000463147 C21orf2O43822 256 aa8.41□□□□□ -1.06
USH2A-203ENST00000463147 SCG3Q8WXD2 468 aaKnown RBP8.41□□□□□ -1.06
USH2A-203ENST00000463147 NAGPAQ9UK23 515 aa8.41□□□□□ -1.06
USH2A-203ENST00000463147 SEC13P55735 322 aa8.4□□□□□ -1.06
USH2A-203ENST00000463147 ELMSAN1Q6PJG2 1045 aa8.4□□□□□ -1.06
USH2A-203ENST00000463147 NGLY1Q96IV0 654 aa8.4□□□□□ -1.06
USH2A-203ENST00000463147 GOLGA2P5Q9HBQ8 144 aa8.4□□□□□ -1.06
USH2A-203ENST00000463147 IREB2P48200 963 aaKnown RBP8.39□□□□□ -1.07
USH2A-203ENST00000463147 TMEM132AQ24JP5 1023 aa8.39□□□□□ -1.07
USH2A-203ENST00000463147 TRPM4Q8TD43 1214 aa8.39□□□□□ -1.07
USH2A-203ENST00000463147 CPB1P15086 417 aa8.38□□□□□ -1.07
USH2A-203ENST00000463147 HDGFL1Q5TGJ6 251 aa8.38□□□□□ -1.07
USH2A-203ENST00000463147 PRR23CQ6ZRP0 262 aa8.38□□□□□ -1.07
USH2A-203ENST00000463147 CHMP7Q8WUX9 453 aaPredicted RBP8.38□□□□□ -1.07
USH2A-203ENST00000463147 ZNF594Q96JF6 807 aaPredicted RBP8.38□□□□□ -1.07
USH2A-203ENST00000463147 LPIN3Q9BQK8 851 aa8.38□□□□□ -1.07
USH2A-203ENST00000463147 SRA1Q9HD15 236 aaKnown RBP8.38□□□□□ -1.07
USH2A-203ENST00000463147 NOS3P29474 1203 aa8.37□□□□□ -1.07
USH2A-203ENST00000463147 GPLD1P80108 840 aa8.37□□□□□ -1.07
USH2A-203ENST00000463147 FLIIQ13045 1269 aa8.37□□□□□ -1.07
USH2A-203ENST00000463147 DHX32Q7L7V1 743 aaKnown RBP8.37□□□□□ -1.07
USH2A-203ENST00000463147 DMGDHQ9UI17 866 aaKnown RBP8.37□□□□□ -1.07
USH2A-203ENST00000463147 PAX4O43316 350 aa8.36□□□□□ -1.07
USH2A-203ENST00000463147 DKK1O94907 266 aa8.36□□□□□ -1.07
USH2A-203ENST00000463147 RASA1P20936 1047 aa8.36□□□□□ -1.07
USH2A-203ENST00000463147 GRIK5Q16478 980 aa8.36□□□□□ -1.07
USH2A-203ENST00000463147 MCTP1Q6DN14 999 aa8.36□□□□□ -1.07
USH2A-203ENST00000463147 PCMTD2Q9NV79 361 aa8.36□□□□□ -1.07
USH2A-203ENST00000463147 IGFBP4P22692 258 aa8.35□□□□□ -1.07
USH2A-203ENST00000463147 ARSDP51689 593 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms