RNA–Protein interactions for RNA: ENST00000461862.5

SCNM1-204, Transcript of sodium channel modifier 1, human

TSL 2

Gene SCNM1, Length 1,094 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCNM1-204	ENST00000461862	COG3	Q96JB2	828 aa		13.63	□□□□□ -0.23
SCNM1-204	ENST00000461862	USP31	Q70CQ4	1352 aa		13.62	□□□□□ -0.23
SCNM1-204	ENST00000461862	LILRB3	O75022	631 aa		13.62	□□□□□ -0.23
SCNM1-204	ENST00000461862	KRT28	Q7Z3Y7	464 aa		13.62	□□□□□ -0.23
SCNM1-204	ENST00000461862	NME9	Q86XW9	330 aa		13.62	□□□□□ -0.23
SCNM1-204	ENST00000461862	NGDN	Q8NEJ9	315 aa	Known RBP	13.62	□□□□□ -0.23
SCNM1-204	ENST00000461862	MAP10	Q9P2G4	905 aa		13.62	□□□□□ -0.23
SCNM1-204	ENST00000461862	MED1	Q15648	1581 aa	Predicted RBP	13.62	□□□□□ -0.23
SCNM1-204	ENST00000461862	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.61	□□□□□ -0.23
SCNM1-204	ENST00000461862	NUTM2E	B1AL46	878 aa	Predicted RBP	13.61	□□□□□ -0.23
SCNM1-204	ENST00000461862	ALDH1A1	P00352	501 aa		13.61	□□□□□ -0.23
SCNM1-204	ENST00000461862	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.61	□□□□□ -0.23
SCNM1-204	ENST00000461862	ZNF511	Q8NB15	262 aa		13.61	□□□□□ -0.23
SCNM1-204	ENST00000461862	CLK2	P49760	499 aa	Known RBP	13.6	□□□□□ -0.23
SCNM1-204	ENST00000461862	GPBP1L1	Q9HC44	474 aa	Predicted RBP	13.6	□□□□□ -0.23
SCNM1-204	ENST00000461862	GMPR2	Q9P2T1	348 aa	Known RBP	13.6	□□□□□ -0.23
SCNM1-204	ENST00000461862	NUDC	Q9Y266	331 aa		13.6	□□□□□ -0.23
SCNM1-204	ENST00000461862	MARF1	Q9Y4F3	1742 aa	Known RBP	13.6	□□□□□ -0.23
SCNM1-204	ENST00000461862	JCAD	Q9P266	1359 aa		13.59	□□□□□ -0.23
SCNM1-204	ENST00000461862	CTH	P32929	405 aa		13.59	□□□□□ -0.23
SCNM1-204	ENST00000461862	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.59	□□□□□ -0.23
SCNM1-204	ENST00000461862	RTL5	Q5HYW3	569 aa	Predicted RBP	13.58	□□□□□ -0.24
SCNM1-204	ENST00000461862	NUTM2G	Q5VZR2	741 aa		13.58	□□□□□ -0.24
SCNM1-204	ENST00000461862	POLK	Q9UBT6	870 aa		13.58	□□□□□ -0.24
SCNM1-204	ENST00000461862	NPHP3	Q7Z494	1330 aa		13.58	□□□□□ -0.24
SCNM1-204	ENST00000461862	RGS17	Q9UGC6	210 aa	Predicted RBP	13.57	□□□□□ -0.24
SCNM1-204	ENST00000461862	TLL2	Q9Y6L7	1015 aa		13.57	□□□□□ -0.24
SCNM1-204	ENST00000461862	SPATA31A3	Q5VYP0	1347 aa		13.57	□□□□□ -0.24
SCNM1-204	ENST00000461862	DIAPH1	O60610	1272 aa	Known RBP	13.56	□□□□□ -0.24
SCNM1-204	ENST00000461862	PSME1	Q06323	249 aa		13.56	□□□□□ -0.24
SCNM1-204	ENST00000461862	RUNDC1	Q96C34	613 aa		13.56	□□□□□ -0.24
SCNM1-204	ENST00000461862	KDM4C	Q9H3R0	1056 aa		13.56	□□□□□ -0.24
SCNM1-204	ENST00000461862	POLR3E	Q9NVU0	708 aa		13.56	□□□□□ -0.24
SCNM1-204	ENST00000461862	NEFL	P07196	543 aa		13.55	□□□□□ -0.24
SCNM1-204	ENST00000461862	TSC1	Q92574	1164 aa		13.55	□□□□□ -0.24
SCNM1-204	ENST00000461862	PNN	Q9H307	717 aa	Known RBP	13.55	□□□□□ -0.24
SCNM1-204	ENST00000461862	ZNF521	Q96K83	1311 aa		13.55	□□□□□ -0.24
SCNM1-204	ENST00000461862	TNS3	Q68CZ2	1445 aa		13.55	□□□□□ -0.24
SCNM1-204	ENST00000461862	PEAK1	Q9H792	1746 aa		13.54	□□□□□ -0.24
SCNM1-204	ENST00000461862	ADAMTS2	O95450	1211 aa		13.54	□□□□□ -0.24
SCNM1-204	ENST00000461862	LRRC59	Q96AG4	307 aa	Known RBP	13.54	□□□□□ -0.24
SCNM1-204	ENST00000461862	ATP13A2	Q9NQ11	1180 aa		13.54	□□□□□ -0.24
SCNM1-204	ENST00000461862	KIF24	Q5T7B8	1368 aa		13.54	□□□□□ -0.24
SCNM1-204	ENST00000461862	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.53	□□□□□ -0.24
SCNM1-204	ENST00000461862	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.53	□□□□□ -0.24
SCNM1-204	ENST00000461862	CCDC146	Q8IYE0	955 aa		13.53	□□□□□ -0.24
SCNM1-204	ENST00000461862	RSPH6A	Q9H0K4	717 aa		13.53	□□□□□ -0.24
SCNM1-204	ENST00000461862	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.53	□□□□□ -0.24
SCNM1-204	ENST00000461862	ALS2	Q96Q42	1657 aa		13.53	□□□□□ -0.24
SCNM1-204	ENST00000461862	APAF1	O14727	1248 aa		13.52	□□□□□ -0.25
SCNM1-204	ENST00000461862	FAM117A	Q9C073	453 aa		13.52	□□□□□ -0.25
SCNM1-204	ENST00000461862	EMILIN1	Q9Y6C2	1016 aa		13.52	□□□□□ -0.25
SCNM1-204	ENST00000461862	SBNO1	A3KN83	1393 aa		13.52	□□□□□ -0.25
SCNM1-204	ENST00000461862	RGPD1	P0DJD0	1748 aa		13.52	□□□□□ -0.25
SCNM1-204	ENST00000461862	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.51	□□□□□ -0.25
SCNM1-204	ENST00000461862	VARS	P26640	1264 aa	Known RBP	13.51	□□□□□ -0.25
SCNM1-204	ENST00000461862	CCDC27	Q2M243	656 aa		13.51	□□□□□ -0.25
SCNM1-204	ENST00000461862	ILDR2	Q71H61	639 aa		13.51	□□□□□ -0.25
SCNM1-204	ENST00000461862	FOXJ1	Q92949	421 aa		13.51	□□□□□ -0.25
SCNM1-204	ENST00000461862	LTN1	O94822	1766 aa		13.5	□□□□□ -0.25
SCNM1-204	ENST00000461862	ABCA3	Q99758	1704 aa		13.5	□□□□□ -0.25
SCNM1-204	ENST00000461862	SLIT3	O75094	1523 aa		13.5	□□□□□ -0.25
SCNM1-204	ENST00000461862	FLT4	P35916	1363 aa		13.5	□□□□□ -0.25
SCNM1-204	ENST00000461862	U2SURP	O15042	1029 aa	Known RBP	13.5	□□□□□ -0.25
SCNM1-204	ENST00000461862	NFAT5	O94916	1531 aa		13.49	□□□□□ -0.25
SCNM1-204	ENST00000461862	RTL1	A6NKG5	1358 aa		13.49	□□□□□ -0.25
SCNM1-204	ENST00000461862	MAPK8IP3	Q9UPT6	1336 aa		13.49	□□□□□ -0.25
SCNM1-204	ENST00000461862	PPM1G	O15355	546 aa	Predicted RBP	13.49	□□□□□ -0.25
SCNM1-204	ENST00000461862	IL13	P35225	146 aa		13.49	□□□□□ -0.25
SCNM1-204	ENST00000461862	RRS1	Q15050	365 aa	Known RBP	13.49	□□□□□ -0.25
SCNM1-204	ENST00000461862	POTEA	Q6S8J7	498 aa		13.49	□□□□□ -0.25
SCNM1-204	ENST00000461862	SUPT16H	Q9Y5B9	1047 aa	Known RBP	13.49	□□□□□ -0.25
SCNM1-204	ENST00000461862	WASF2	Q9Y6W5	498 aa		13.49	□□□□□ -0.25
SCNM1-204	ENST00000461862	CRYBG1	Q9Y4K1	1723 aa		13.48	□□□□□ -0.25
SCNM1-204	ENST00000461862	SPATA31A6	Q5VVP1	1343 aa		13.48	□□□□□ -0.25
SCNM1-204	ENST00000461862	C4orf48	Q5BLP8	95 aa		13.48	□□□□□ -0.25
SCNM1-204	ENST00000461862	TCP11L2	Q8N4U5	519 aa		13.48	□□□□□ -0.25
SCNM1-204	ENST00000461862	ABTB2	Q8N961	1025 aa		13.48	□□□□□ -0.25
SCNM1-204	ENST00000461862	C8orf37	Q96NL8	207 aa		13.48	□□□□□ -0.25
SCNM1-204	ENST00000461862	PLEKHF1	Q96S99	279 aa		13.48	□□□□□ -0.25
SCNM1-204	ENST00000461862	MAP3K19	Q56UN5	1328 aa		13.47	□□□□□ -0.25
SCNM1-204	ENST00000461862	RNF123	Q5XPI4	1314 aa		13.47	□□□□□ -0.25
SCNM1-204	ENST00000461862	SENP3-EIF4A1	A0A087X0R7	540 aa		13.47	□□□□□ -0.25
SCNM1-204	ENST00000461862		E9PSI1	815 aa		13.47	□□□□□ -0.25
SCNM1-204	ENST00000461862	NEFM	P07197	916 aa		13.47	□□□□□ -0.25
SCNM1-204	ENST00000461862	FBLN1	P23142	703 aa		13.47	□□□□□ -0.25
SCNM1-204	ENST00000461862	SH3D19	Q5HYK7	790 aa		13.47	□□□□□ -0.25
SCNM1-204	ENST00000461862	HELB	Q8NG08	1087 aa	Predicted RBP	13.47	□□□□□ -0.25
SCNM1-204	ENST00000461862	SLFN5	Q08AF3	891 aa		13.46	□□□□□ -0.25
SCNM1-204	ENST00000461862	MEX3C	Q5U5Q3	659 aa	Known RBP	13.46	□□□□□ -0.25
SCNM1-204	ENST00000461862	ERICH6B	Q5W0A0	696 aa		13.46	□□□□□ -0.25
SCNM1-204	ENST00000461862	MPND	Q8N594	471 aa		13.46	□□□□□ -0.25
SCNM1-204	ENST00000461862	KCNH5	Q8NCM2	988 aa		13.46	□□□□□ -0.25
SCNM1-204	ENST00000461862	ARHGEF10	O15013	1369 aa		13.45	□□□□□ -0.26
SCNM1-204	ENST00000461862	AFF2	P51816	1311 aa		13.45	□□□□□ -0.26
SCNM1-204	ENST00000461862	SNRPB	P14678	240 aa	Known RBP	13.45	□□□□□ -0.26
SCNM1-204	ENST00000461862	SKIV2L	Q15477	1246 aa	Known RBP	13.45	□□□□□ -0.26
SCNM1-204	ENST00000461862	WDR63	Q8IWG1	891 aa		13.45	□□□□□ -0.26
SCNM1-204	ENST00000461862	WWC1	Q8IX03	1113 aa		13.45	□□□□□ -0.26
SCNM1-204	ENST00000461862	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.45	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms