RNA–Protein interactions for RNA: ENST00000458034.1

RFX3-211, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 814 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-211ENST00000458034 SMC3Q9UQE7 1217 aa13.14□□□□□ -0.31
RFX3-211ENST00000458034 COL15A1P39059 1388 aa13.13□□□□□ -0.31
RFX3-211ENST00000458034 LETM1O95202 739 aaPredicted RBP13.13□□□□□ -0.31
RFX3-211ENST00000458034 PRR29P0C7W0 189 aa13.13□□□□□ -0.31
RFX3-211ENST00000458034 POTEIP0CG38 1075 aa13.13□□□□□ -0.31
RFX3-211ENST00000458034 PHKG2P15735 406 aa13.13□□□□□ -0.31
RFX3-211ENST00000458034 PSMA5P28066 241 aa13.13□□□□□ -0.31
RFX3-211ENST00000458034 CWF19L2Q2TBE0 894 aaKnown RBP13.13□□□□□ -0.31
RFX3-211ENST00000458034 RNF20Q5VTR2 975 aa13.13□□□□□ -0.31
RFX3-211ENST00000458034 FOXD4L5Q5VV16 416 aaPredicted RBP13.13□□□□□ -0.31
RFX3-211ENST00000458034 TTC5Q8N0Z6 440 aa13.13□□□□□ -0.31
RFX3-211ENST00000458034 TMEM87AQ8NBN3 555 aa13.13□□□□□ -0.31
RFX3-211ENST00000458034 FOXD4L4Q8WXT5 416 aaPredicted RBP13.13□□□□□ -0.31
RFX3-211ENST00000458034 BICC1Q9H694 974 aaKnown RBP13.13□□□□□ -0.31
RFX3-211ENST00000458034 NLRP2Q9NX02 1062 aa13.13□□□□□ -0.31
RFX3-211ENST00000458034 CYP46A1Q9Y6A2 500 aa13.13□□□□□ -0.31
RFX3-211ENST00000458034 TCHHQ07283 1943 aa13.13□□□□□ -0.31
RFX3-211ENST00000458034 KDM6AO15550 1401 aaPredicted RBP13.13□□□□□ -0.31
RFX3-211ENST00000458034 CCDC171Q6TFL3 1326 aa13.13□□□□□ -0.31
RFX3-211ENST00000458034 RFX7Q2KHR2 1363 aa13.12□□□□□ -0.31
RFX3-211ENST00000458034 RPAP1Q9BWH6 1393 aaPredicted RBP13.12□□□□□ -0.31
RFX3-211ENST00000458034 ZSCAN22P10073 491 aaPredicted RBP13.12□□□□□ -0.31
RFX3-211ENST00000458034 CASTP20810 708 aaKnown RBP13.12□□□□□ -0.31
RFX3-211ENST00000458034 MSNP26038 577 aaKnown RBP13.12□□□□□ -0.31
RFX3-211ENST00000458034 KCNJ4P48050 445 aa13.12□□□□□ -0.31
RFX3-211ENST00000458034 AK2P54819 239 aa13.12□□□□□ -0.31
RFX3-211ENST00000458034 ZSCAN30Q86W11 494 aa13.12□□□□□ -0.31
RFX3-211ENST00000458034 METTL22Q9BUU2 404 aaPredicted RBP13.12□□□□□ -0.31
RFX3-211ENST00000458034 IL25Q9H293 177 aa13.12□□□□□ -0.31
RFX3-211ENST00000458034 TSPY26PQ9H489 355 aa13.12□□□□□ -0.31
RFX3-211ENST00000458034 PDRG1Q9NUG6 133 aa13.12□□□□□ -0.31
RFX3-211ENST00000458034 RBM27Q9P2N5 1060 aaKnown RBP13.12□□□□□ -0.31
RFX3-211ENST00000458034 PA2G4Q9UQ80 394 aaKnown RBP13.12□□□□□ -0.31
RFX3-211ENST00000458034 AXIN2Q9Y2T1 843 aa13.12□□□□□ -0.31
RFX3-211ENST00000458034 NEURL1BA8MQ27 555 aa13.11□□□□□ -0.31
RFX3-211ENST00000458034 SNRPA1P09661 255 aaKnown RBP13.11□□□□□ -0.31
RFX3-211ENST00000458034 CSB-PGBD3P0DP91 1061 aa13.11□□□□□ -0.31
RFX3-211ENST00000458034 PRIM1P49642 420 aaKnown RBP13.11□□□□□ -0.31
RFX3-211ENST00000458034 ZC3H6P61129 1189 aaKnown RBP13.11□□□□□ -0.31
RFX3-211ENST00000458034 AIMP1Q12904 312 aaKnown RBP13.11□□□□□ -0.31
RFX3-211ENST00000458034 ANKRD1Q15327 319 aa13.11□□□□□ -0.31
RFX3-211ENST00000458034 DCAF5Q96JK2 942 aa13.11□□□□□ -0.31
RFX3-211ENST00000458034 JAKMIP1Q96N16 626 aaKnown RBP13.11□□□□□ -0.31
RFX3-211ENST00000458034 FMNL2Q96PY5 1086 aa13.11□□□□□ -0.31
RFX3-211ENST00000458034 RBSNQ9H1K0 784 aa13.11□□□□□ -0.31
RFX3-211ENST00000458034 ZSWIM6Q9HCJ5 1215 aa13.11□□□□□ -0.31
RFX3-211ENST00000458034 SNRKQ9NRH2 765 aa13.11□□□□□ -0.31
RFX3-211ENST00000458034 TMEM63CQ9P1W3 806 aa13.11□□□□□ -0.31
RFX3-211ENST00000458034 TNS3Q68CZ2 1445 aa13.11□□□□□ -0.31
RFX3-211ENST00000458034 SYCE3A1L190 88 aa13.1□□□□□ -0.31
RFX3-211ENST00000458034 STX6O43752 255 aa13.1□□□□□ -0.31
RFX3-211ENST00000458034 GCKRQ14397 625 aa13.1□□□□□ -0.31
RFX3-211ENST00000458034 PDIA6Q15084 440 aa13.1□□□□□ -0.31
RFX3-211ENST00000458034 RUFY3Q7L099 469 aa13.1□□□□□ -0.31
RFX3-211ENST00000458034 XAGE3Q8WTP9 111 aa13.1□□□□□ -0.31
RFX3-211ENST00000458034 NAP1L5Q96NT1 182 aaPredicted RBP13.1□□□□□ -0.31
RFX3-211ENST00000458034 MYD88Q99836 296 aa13.1□□□□□ -0.31
RFX3-211ENST00000458034 ANO8Q9HCE9 1232 aaPredicted RBP13.1□□□□□ -0.31
RFX3-211ENST00000458034 HMG20BQ9P0W2 317 aa13.1□□□□□ -0.31
RFX3-211ENST00000458034 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.1□□□□□ -0.31
RFX3-211ENST00000458034 ERBB4Q15303 1308 aa13.1□□□□□ -0.31
RFX3-211ENST00000458034 MEGF6O75095 1541 aa13.09□□□□□ -0.31
RFX3-211ENST00000458034 PRAMEF22A3QJZ6 481 aa13.09□□□□□ -0.31
RFX3-211ENST00000458034 SASH1O94885 1247 aa13.09□□□□□ -0.31
RFX3-211ENST00000458034 PRPF40BQ6NWY9 871 aaKnown RBP13.09□□□□□ -0.31
RFX3-211ENST00000458034 RASEFQ8IZ41 740 aa13.09□□□□□ -0.31
RFX3-211ENST00000458034 FAM184AQ8NB25 1140 aa13.09□□□□□ -0.31
RFX3-211ENST00000458034 PDLIM2Q96JY6 352 aa13.09□□□□□ -0.31
RFX3-211ENST00000458034 FSD1Q9BTV5 496 aa13.09□□□□□ -0.31
RFX3-211ENST00000458034 RBM8AQ9Y5S9 174 aaKnown RBP13.09□□□□□ -0.31
RFX3-211ENST00000458034 F13A1P00488 732 aa13.08□□□□□ -0.32
RFX3-211ENST00000458034 IGKV5-2P06315 115 aa13.08□□□□□ -0.32
RFX3-211ENST00000458034 MYL6BP14649 208 aa13.08□□□□□ -0.32
RFX3-211ENST00000458034 UBE2HP62256 183 aa13.08□□□□□ -0.32
RFX3-211ENST00000458034 PTH1RQ03431 593 aa13.08□□□□□ -0.32
RFX3-211ENST00000458034 NMIQ13287 307 aaPredicted RBP13.08□□□□□ -0.32
RFX3-211ENST00000458034 KRT32Q14532 448 aa13.08□□□□□ -0.32
RFX3-211ENST00000458034 NECTIN1Q15223 517 aa13.08□□□□□ -0.32
RFX3-211ENST00000458034 UVSSAQ2YD98 709 aa13.08□□□□□ -0.32
RFX3-211ENST00000458034 CCDC183Q5T5S1 534 aa13.08□□□□□ -0.32
RFX3-211ENST00000458034 CREB3L3Q68CJ9 461 aa13.08□□□□□ -0.32
RFX3-211ENST00000458034 ANKRD13DQ6ZTN6 518 aa13.08□□□□□ -0.32
RFX3-211ENST00000458034 USP48Q86UV5 1035 aa13.08□□□□□ -0.32
RFX3-211ENST00000458034 EAF2Q96CJ1 260 aaPredicted RBP13.08□□□□□ -0.32
RFX3-211ENST00000458034 KAZALD1Q96I82 304 aa13.08□□□□□ -0.32
RFX3-211ENST00000458034 COPRSQ9NQ92 184 aa13.08□□□□□ -0.32
RFX3-211ENST00000458034 CCDC39Q9UFE4 941 aa13.08□□□□□ -0.32
RFX3-211ENST00000458034 CPDO75976 1380 aa13.07□□□□□ -0.32
RFX3-211ENST00000458034 PDCP20941 246 aa13.07□□□□□ -0.32
RFX3-211ENST00000458034 MCM5P33992 734 aa13.07□□□□□ -0.32
RFX3-211ENST00000458034 SLC39A6Q13433 755 aa13.07□□□□□ -0.32
RFX3-211ENST00000458034 COPS6Q7L5N1 327 aa13.07□□□□□ -0.32
RFX3-211ENST00000458034 CADPS2Q86UW7 1296 aa13.07□□□□□ -0.32
RFX3-211ENST00000458034 TICAM2Q86XR7 235 aa13.07□□□□□ -0.32
RFX3-211ENST00000458034 MAP4K1Q92918 833 aa13.07□□□□□ -0.32
RFX3-211ENST00000458034 CCDC8Q9H0W5 538 aaPredicted RBP13.07□□□□□ -0.32
RFX3-211ENST00000458034 ALDH8A1Q9H2A2 487 aaPredicted RBP13.07□□□□□ -0.32
RFX3-211ENST00000458034 JCADQ9P266 1359 aa13.07□□□□□ -0.32
RFX3-211ENST00000458034 MED23Q9ULK4 1368 aa13.07□□□□□ -0.32
RFX3-211ENST00000458034 NUP188Q5SRE5 1749 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms