RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 MMP10P09238 476 aa19.93■□□□□ 0.78
USP40-206ENST00000443711 GCKRQ14397 625 aa19.93■□□□□ 0.78
USP40-206ENST00000443711 SUSD4Q5VX71 490 aa19.93■□□□□ 0.78
USP40-206ENST00000443711 UTP14AQ9BVJ6 771 aaKnown RBP19.93■□□□□ 0.78
USP40-206ENST00000443711 PARP3Q9Y6F1 533 aa19.93■□□□□ 0.78
USP40-206ENST00000443711 FAM177BA6PVY3 158 aa19.92■□□□□ 0.78
USP40-206ENST00000443711 C20orf194Q5TEA3 1177 aa19.92■□□□□ 0.78
USP40-206ENST00000443711 ITPRIPQ8IWB1 547 aa19.92■□□□□ 0.78
USP40-206ENST00000443711 NYXQ9GZU5 481 aa19.92■□□□□ 0.78
USP40-206ENST00000443711 ATF5Q9Y2D1 282 aaPredicted RBP19.92■□□□□ 0.78
USP40-206ENST00000443711 IBTKQ9P2D0 1353 aaPredicted RBP19.92■□□□□ 0.78
USP40-206ENST00000443711 COL24A1Q17RW2 1714 aa19.91■□□□□ 0.78
USP40-206ENST00000443711 POLRMTO00411 1230 aaKnown RBP19.91■□□□□ 0.78
USP40-206ENST00000443711 SERPINB2P05120 415 aa19.91■□□□□ 0.78
USP40-206ENST00000443711 DDR1Q08345 913 aa19.91■□□□□ 0.78
USP40-206ENST00000443711 TPTE2Q6XPS3 522 aa19.91■□□□□ 0.78
USP40-206ENST00000443711 NBPF5PQ86XG9 351 aaPredicted RBP19.91■□□□□ 0.78
USP40-206ENST00000443711 C9orf78Q9NZ63 289 aaPredicted RBP19.91■□□□□ 0.78
USP40-206ENST00000443711 TRMT112Q9UI30 125 aaKnown RBP19.91■□□□□ 0.78
USP40-206ENST00000443711 COG6Q9Y2V7 657 aa19.91■□□□□ 0.78
USP40-206ENST00000443711 PCCAP05165 728 aaPredicted RBP19.9■□□□□ 0.78
USP40-206ENST00000443711 POLD1P28340 1107 aa19.9■□□□□ 0.78
USP40-206ENST00000443711 GTF2E1P29083 439 aaPredicted RBP19.9■□□□□ 0.78
USP40-206ENST00000443711 MVPQ14764 893 aaKnown RBP19.9■□□□□ 0.78
USP40-206ENST00000443711 H7C1W4 665 aa19.89■□□□□ 0.77
USP40-206ENST00000443711 NPHP1O15259 732 aa19.89■□□□□ 0.77
USP40-206ENST00000443711 NTSR2O95665 410 aa19.89■□□□□ 0.77
USP40-206ENST00000443711 ZBTB38Q8NAP3 1195 aaPredicted RBP19.89■□□□□ 0.77
USP40-206ENST00000443711 SH3TC1Q8TE82 1336 aa19.88■□□□□ 0.77
USP40-206ENST00000443711 GRM8O00222 908 aa19.88■□□□□ 0.77
USP40-206ENST00000443711 CNBD1Q8NA66 436 aa19.88■□□□□ 0.77
USP40-206ENST00000443711 USP44Q9H0E7 712 aa19.88■□□□□ 0.77
USP40-206ENST00000443711 CHMP4BQ9H444 224 aaKnown RBP19.88■□□□□ 0.77
USP40-206ENST00000443711 SPON1Q9HCB6 807 aa19.88■□□□□ 0.77
USP40-206ENST00000443711 DDX19BQ9UMR2 479 aa19.88■□□□□ 0.77
USP40-206ENST00000443711 FAM89AQ96GI7 184 aa19.87■□□□□ 0.77
USP40-206ENST00000443711 UTYO14607 1347 aa19.86■□□□□ 0.77
USP40-206ENST00000443711 NRXN2Q9P2S2 1712 aa19.86■□□□□ 0.77
USP40-206ENST00000443711 GNAI3P08754 354 aa19.86■□□□□ 0.77
USP40-206ENST00000443711 HSP90B1P14625 803 aaKnown RBP19.86■□□□□ 0.77
USP40-206ENST00000443711 RTL5Q5HYW3 569 aaPredicted RBP19.86■□□□□ 0.77
USP40-206ENST00000443711 PRR5LQ6MZQ0 368 aa19.86■□□□□ 0.77
USP40-206ENST00000443711 UBE3BQ7Z3V4 1068 aa19.86■□□□□ 0.77
USP40-206ENST00000443711 JARID2Q92833 1246 aaPredicted RBP19.86■□□□□ 0.77
USP40-206ENST00000443711 HDAC5Q9UQL6 1122 aa19.86■□□□□ 0.77
USP40-206ENST00000443711 CDHR2Q9BYE9 1310 aa19.85■□□□□ 0.77
USP40-206ENST00000443711 ZBTB7BO15156 539 aaPredicted RBP19.85■□□□□ 0.77
USP40-206ENST00000443711 UBTFL1P0CB47 393 aaPredicted RBP19.85■□□□□ 0.77
USP40-206ENST00000443711 ST5P78524 1137 aa19.85■□□□□ 0.77
USP40-206ENST00000443711 ERFEQ4G0M1 354 aa19.85■□□□□ 0.77
USP40-206ENST00000443711 NUTM1Q86Y26 1132 aa19.85■□□□□ 0.77
USP40-206ENST00000443711 NBPF7P0C2Y1 421 aaPredicted RBP19.84■□□□□ 0.77
USP40-206ENST00000443711 CASP7P55210 303 aa19.84■□□□□ 0.77
USP40-206ENST00000443711 SLC10A5Q5PT55 438 aa19.84■□□□□ 0.77
USP40-206ENST00000443711 SYNE4Q8N205 404 aa19.84■□□□□ 0.77
USP40-206ENST00000443711 CRBNQ96SW2 442 aa19.84■□□□□ 0.77
USP40-206ENST00000443711 MEIS3Q99687 375 aa19.84■□□□□ 0.77
USP40-206ENST00000443711 SGIP1Q9BQI5 828 aa19.84■□□□□ 0.77
USP40-206ENST00000443711 IRS4O14654 1257 aaPredicted RBP19.83■□□□□ 0.77
USP40-206ENST00000443711 PTGER2P43116 358 aa19.83■□□□□ 0.77
USP40-206ENST00000443711 CCDC24Q8N4L8 307 aa19.82■□□□□ 0.76
USP40-206ENST00000443711 PDE8AO60658 829 aa19.81■□□□□ 0.76
USP40-206ENST00000443711 NEFLP07196 543 aa19.81■□□□□ 0.76
USP40-206ENST00000443711 HCLS1P14317 486 aaPredicted RBP19.81■□□□□ 0.76
USP40-206ENST00000443711 IRX6P78412 446 aaPredicted RBP19.81■□□□□ 0.76
USP40-206ENST00000443711 BRIP1Q9BX63 1249 aa19.81■□□□□ 0.76
USP40-206ENST00000443711 RIC1Q4ADV7 1423 aa19.8■□□□□ 0.76
USP40-206ENST00000443711 GNAI2P04899 355 aa19.8■□□□□ 0.76
USP40-206ENST00000443711 SUCLG2Q96I99 432 aa19.8■□□□□ 0.76
USP40-206ENST00000443711 NLRP3Q96P20 1036 aa19.8■□□□□ 0.76
USP40-206ENST00000443711 PLA2G12BQ9BX93 195 aa19.8■□□□□ 0.76
USP40-206ENST00000443711 ZBTB40Q9NUA8 1239 aa19.8■□□□□ 0.76
USP40-206ENST00000443711 MYH3P11055 1940 aa19.8■□□□□ 0.76
USP40-206ENST00000443711 ABCC12Q96J65 1359 aa19.8■□□□□ 0.76
USP40-206ENST00000443711 LAMB2P55268 1798 aa19.8■□□□□ 0.76
USP40-206ENST00000443711 DDX60Q8IY21 1712 aaKnown RBP19.79■□□□□ 0.76
USP40-206ENST00000443711 PDE6BP35913 854 aa19.78■□□□□ 0.76
USP40-206ENST00000443711 AAMPQ13685 434 aa19.78■□□□□ 0.76
USP40-206ENST00000443711 EXOC6Q8TAG9 804 aa19.78■□□□□ 0.76
USP40-206ENST00000443711 LRRFIP2Q9Y608 721 aaKnown RBP19.78■□□□□ 0.76
USP40-206ENST00000443711 ANKRD31Q8N7Z5 1873 aa19.77■□□□□ 0.76
USP40-206ENST00000443711 FOXO4P98177 505 aa19.77■□□□□ 0.76
USP40-206ENST00000443711 KAZALD1Q96I82 304 aa19.77■□□□□ 0.76
USP40-206ENST00000443711 C10orf71Q711Q0 1435 aa19.76■□□□□ 0.75
USP40-206ENST00000443711 SF3B3Q15393 1217 aaKnown RBP19.76■□□□□ 0.75
USP40-206ENST00000443711 BICC1Q9H694 974 aaKnown RBP19.76■□□□□ 0.75
USP40-206ENST00000443711 PDZRN3Q9UPQ7 1066 aa19.76■□□□□ 0.75
USP40-206ENST00000443711 KIF13BQ9NQT8 1826 aa19.76■□□□□ 0.75
USP40-206ENST00000443711 KLRG2A4D1S0 409 aaPredicted RBP19.75■□□□□ 0.75
USP40-206ENST00000443711 CSF1RP07333 972 aa19.75■□□□□ 0.75
USP40-206ENST00000443711 CTSWP56202 376 aa19.75■□□□□ 0.75
USP40-206ENST00000443711 EPHA10Q5JZY3 1008 aa19.75■□□□□ 0.75
USP40-206ENST00000443711 LMBR1LQ6UX01 489 aa19.75■□□□□ 0.75
USP40-206ENST00000443711 TTLL11Q8NHH1 800 aa19.75■□□□□ 0.75
USP40-206ENST00000443711 RABL6Q3YEC7 729 aaPredicted RBP19.74■□□□□ 0.75
USP40-206ENST00000443711 CCDC152Q4G0S7 254 aa19.74■□□□□ 0.75
USP40-206ENST00000443711 C3orf67Q6ZVT6 689 aa19.74■□□□□ 0.75
USP40-206ENST00000443711 ANKRD44Q8N8A2 993 aa19.74■□□□□ 0.75
USP40-206ENST00000443711 C1orf115Q9H7X2 142 aa19.74■□□□□ 0.75
USP40-206ENST00000443711 PPP1R1BQ9UD71 204 aaPredicted RBP19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms