RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 DDX21Q9NR30 783 aaKnown RBP eCLIP12.62□□□□□ -0.39
TCOF1-204ENST00000427724 PRDM15P57071 1507 aaPredicted RBP12.62□□□□□ -0.39
TCOF1-204ENST00000427724 SMARCA5O60264 1052 aaPredicted RBP12.62□□□□□ -0.39
TCOF1-204ENST00000427724 PDCL3Q9H2J4 239 aa12.62□□□□□ -0.39
TCOF1-204ENST00000427724 BIN2Q9UBW5 565 aaPredicted RBP12.62□□□□□ -0.39
TCOF1-204ENST00000427724 USP16Q9Y5T5 823 aa12.62□□□□□ -0.39
TCOF1-204ENST00000427724 PDE6BP35913 854 aa12.61□□□□□ -0.39
TCOF1-204ENST00000427724 SAFBQ15424 915 aaKnown RBP eCLIP12.61□□□□□ -0.39
TCOF1-204ENST00000427724 PHAXQ9H814 394 aaKnown RBP12.61□□□□□ -0.39
TCOF1-204ENST00000427724 CABP5Q9NP86 173 aa12.61□□□□□ -0.39
TCOF1-204ENST00000427724 ALDH1L2Q3SY69 923 aa12.61□□□□□ -0.39
TCOF1-204ENST00000427724 ZNF804AQ7Z570 1209 aa12.61□□□□□ -0.39
TCOF1-204ENST00000427724 UBAC1Q9BSL1 405 aa12.61□□□□□ -0.39
TCOF1-204ENST00000427724 GRM8O00222 908 aa12.61□□□□□ -0.39
TCOF1-204ENST00000427724 MMP10P09238 476 aa12.61□□□□□ -0.39
TCOF1-204ENST00000427724 ATP2B3Q16720 1220 aa12.61□□□□□ -0.39
TCOF1-204ENST00000427724 ZNF771Q7L3S4 317 aaPredicted RBP12.61□□□□□ -0.39
TCOF1-204ENST00000427724 INSRP06213 1382 aa12.61□□□□□ -0.39
TCOF1-204ENST00000427724 CCDC173Q0VFZ6 552 aa12.6□□□□□ -0.39
TCOF1-204ENST00000427724 ZNF444Q8N0Y2 327 aaPredicted RBP12.6□□□□□ -0.39
TCOF1-204ENST00000427724 CIZ1Q9ULV3 898 aaPredicted RBP12.6□□□□□ -0.39
TCOF1-204ENST00000427724 MAP3K4Q9Y6R4 1608 aa12.6□□□□□ -0.39
TCOF1-204ENST00000427724 UQCRHLA0A096LP55 91 aa12.6□□□□□ -0.39
TCOF1-204ENST00000427724 KCNQ2O43526 872 aa12.6□□□□□ -0.39
TCOF1-204ENST00000427724 UQCRHP07919 91 aa12.6□□□□□ -0.39
TCOF1-204ENST00000427724 HDAC1Q13547 482 aaPredicted RBP12.6□□□□□ -0.39
TCOF1-204ENST00000427724 TXNRD1Q16881 649 aa12.6□□□□□ -0.39
TCOF1-204ENST00000427724 TMEM132AQ24JP5 1023 aa12.6□□□□□ -0.39
TCOF1-204ENST00000427724 HIP1O00291 1037 aa12.6□□□□□ -0.39
TCOF1-204ENST00000427724 SSFA2P28290 1259 aa12.6□□□□□ -0.39
TCOF1-204ENST00000427724 CSPP1Q1MSJ5 1256 aa12.6□□□□□ -0.39
TCOF1-204ENST00000427724 SPTY2D1Q68D10 685 aaPredicted RBP12.6□□□□□ -0.39
TCOF1-204ENST00000427724 LINS1Q8NG48 757 aa12.6□□□□□ -0.39
TCOF1-204ENST00000427724 NAPBQ9H115 298 aa12.6□□□□□ -0.39
TCOF1-204ENST00000427724 THRAP3Q9Y2W1 955 aaKnown RBP12.6□□□□□ -0.39
TCOF1-204ENST00000427724 NPC1L1Q9UHC9 1359 aa12.6□□□□□ -0.39
TCOF1-204ENST00000427724 PLA2R1Q13018 1463 aa12.6□□□□□ -0.39
TCOF1-204ENST00000427724 ZNF521Q96K83 1311 aa12.6□□□□□ -0.39
TCOF1-204ENST00000427724 HLA-DOAP06340 250 aa12.59□□□□□ -0.39
TCOF1-204ENST00000427724 ALDH1B1P30837 517 aa12.59□□□□□ -0.39
TCOF1-204ENST00000427724 CRKLP46109 303 aaKnown RBP12.59□□□□□ -0.39
TCOF1-204ENST00000427724 TBC1D9Q6ZT07 1266 aa12.59□□□□□ -0.39
TCOF1-204ENST00000427724 PREX2Q70Z35 1606 aa12.59□□□□□ -0.39
TCOF1-204ENST00000427724 VPS37CA5D8V6 355 aaPredicted RBP12.59□□□□□ -0.39
TCOF1-204ENST00000427724 ZNF287Q9HBT7 754 aa12.59□□□□□ -0.39
TCOF1-204ENST00000427724 ZHX1Q9UKY1 873 aaPredicted RBP12.59□□□□□ -0.39
TCOF1-204ENST00000427724 CWC27Q6UX04 472 aaKnown RBP12.59□□□□□ -0.39
TCOF1-204ENST00000427724 H7C1D1 291 aa12.59□□□□□ -0.39
TCOF1-204ENST00000427724 KCNQ3O43525 872 aa12.59□□□□□ -0.39
TCOF1-204ENST00000427724 RANBP6O60518 1105 aaKnown RBP12.59□□□□□ -0.39
TCOF1-204ENST00000427724 CCDC96Q2M329 555 aa12.59□□□□□ -0.39
TCOF1-204ENST00000427724 ILDR1Q86SU0 546 aaPredicted RBP12.59□□□□□ -0.39
TCOF1-204ENST00000427724 CNKSR1Q969H4 720 aa12.58□□□□□ -0.4
TCOF1-204ENST00000427724 GGA1Q9UJY5 639 aa12.58□□□□□ -0.4
TCOF1-204ENST00000427724 ZBTB1Q9Y2K1 713 aa12.58□□□□□ -0.4
TCOF1-204ENST00000427724 AXIN2Q9Y2T1 843 aa12.58□□□□□ -0.4
TCOF1-204ENST00000427724 GOLIM4O00461 696 aa12.58□□□□□ -0.4
TCOF1-204ENST00000427724 TSPYL6Q8N831 410 aa12.58□□□□□ -0.4
TCOF1-204ENST00000427724 BMP2KLQ5H9B9 411 aa12.58□□□□□ -0.4
TCOF1-204ENST00000427724 ZSCAN30Q86W11 494 aa12.58□□□□□ -0.4
TCOF1-204ENST00000427724 ARHGAP31Q2M1Z3 1444 aa12.58□□□□□ -0.4
TCOF1-204ENST00000427724 XBP1P17861 261 aa12.57□□□□□ -0.4
TCOF1-204ENST00000427724 NUCB1Q02818 461 aa12.57□□□□□ -0.4
TCOF1-204ENST00000427724 DIP2BQ9P265 1576 aa12.57□□□□□ -0.4
TCOF1-204ENST00000427724 PES1O00541 588 aaKnown RBP12.57□□□□□ -0.4
TCOF1-204ENST00000427724 SERPINB2P05120 415 aa12.57□□□□□ -0.4
TCOF1-204ENST00000427724 TRMT2AQ8IZ69 625 aaKnown RBP12.57□□□□□ -0.4
TCOF1-204ENST00000427724 PIGBQ92521 554 aa12.56□□□□□ -0.4
TCOF1-204ENST00000427724 SMC3Q9UQE7 1217 aa12.56□□□□□ -0.4
TCOF1-204ENST00000427724 CAMSAP1Q5T5Y3 1602 aa12.56□□□□□ -0.4
TCOF1-204ENST00000427724 SOGA3Q5TF21 947 aa12.56□□□□□ -0.4
TCOF1-204ENST00000427724 ANKRD2Q9GZV1 360 aa12.56□□□□□ -0.4
TCOF1-204ENST00000427724 SRP68Q9UHB9 627 aaKnown RBP12.56□□□□□ -0.4
TCOF1-204ENST00000427724 PTPRCP08575 1304 aa12.56□□□□□ -0.4
TCOF1-204ENST00000427724 MTERF4Q7Z6M4 381 aaKnown RBP12.56□□□□□ -0.4
TCOF1-204ENST00000427724 BRMS1Q9HCU9 246 aa12.56□□□□□ -0.4
TCOF1-204ENST00000427724 SETD1BQ9UPS6 1966 aaKnown RBP12.56□□□□□ -0.4
TCOF1-204ENST00000427724 CCDC69A6NI79 296 aa12.55□□□□□ -0.4
TCOF1-204ENST00000427724 VPS72Q15906 364 aa12.55□□□□□ -0.4
TCOF1-204ENST00000427724 ZBTB40Q9NUA8 1239 aa12.55□□□□□ -0.4
TCOF1-204ENST00000427724 TNNT3P45378 269 aaPredicted RBP12.55□□□□□ -0.4
TCOF1-204ENST00000427724 SMC5Q8IY18 1101 aa12.55□□□□□ -0.4
TCOF1-204ENST00000427724 IL17REQ8NFR9 667 aa12.55□□□□□ -0.4
TCOF1-204ENST00000427724 PLBD2Q8NHP8 589 aa12.55□□□□□ -0.4
TCOF1-204ENST00000427724 ABCA9Q8IUA7 1624 aa12.55□□□□□ -0.4
TCOF1-204ENST00000427724 IL16Q14005 1332 aa12.54□□□□□ -0.4
TCOF1-204ENST00000427724 CYP7A1P22680 504 aa12.54□□□□□ -0.4
TCOF1-204ENST00000427724 PSMA5P28066 241 aa12.54□□□□□ -0.4
TCOF1-204ENST00000427724 SUPT20HQ8NEM7 779 aa12.54□□□□□ -0.4
TCOF1-204ENST00000427724 NOC3LQ8WTT2 800 aaKnown RBP12.54□□□□□ -0.4
TCOF1-204ENST00000427724 MEIS3Q99687 375 aa12.54□□□□□ -0.4
TCOF1-204ENST00000427724 CTNNA3Q9UI47 895 aa12.54□□□□□ -0.4
TCOF1-204ENST00000427724 PA2G4Q9UQ80 394 aaKnown RBP12.54□□□□□ -0.4
TCOF1-204ENST00000427724 PTPRTO14522 1441 aa12.54□□□□□ -0.4
TCOF1-204ENST00000427724 VTI1AQ96AJ9 217 aa12.54□□□□□ -0.4
TCOF1-204ENST00000427724 ALDH1L1O75891 902 aa12.54□□□□□ -0.4
TCOF1-204ENST00000427724 GLRX3O76003 335 aaKnown RBP12.54□□□□□ -0.4
TCOF1-204ENST00000427724 RPS8P62241 208 aaKnown RBP12.54□□□□□ -0.4
TCOF1-204ENST00000427724 TTLL7Q6ZT98 887 aa12.54□□□□□ -0.4
TCOF1-204ENST00000427724 ATP6V1DQ9Y5K8 247 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms