RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 CWF19L2Q2TBE0 894 aaKnown RBP12.66□□□□□ -0.38
CD44-207ENST00000425428 NBPF5PQ86XG9 351 aaPredicted RBP12.66□□□□□ -0.38
CD44-207ENST00000425428 CRBNQ96SW2 442 aa12.66□□□□□ -0.38
CD44-207ENST00000425428 ANO8Q9HCE9 1232 aaPredicted RBP12.66□□□□□ -0.38
CD44-207ENST00000425428 CARMIL3Q8ND23 1372 aa12.66□□□□□ -0.38
CD44-207ENST00000425428 GNAI2P04899 355 aa12.66□□□□□ -0.38
CD44-207ENST00000425428 RLBP1P12271 317 aa12.66□□□□□ -0.38
CD44-207ENST00000425428 C20orf194Q5TEA3 1177 aa12.66□□□□□ -0.38
CD44-207ENST00000425428 ZNF34Q8IZ26 560 aa12.66□□□□□ -0.38
CD44-207ENST00000425428 ISCA1Q9BUE6 129 aa12.66□□□□□ -0.38
CD44-207ENST00000425428 FAM177BA6PVY3 158 aa12.65□□□□□ -0.38
CD44-207ENST00000425428 GYS1P13807 737 aa12.65□□□□□ -0.38
CD44-207ENST00000425428 POLD1P28340 1107 aa12.65□□□□□ -0.38
CD44-207ENST00000425428 ST5P78524 1137 aa12.65□□□□□ -0.38
CD44-207ENST00000425428 NLRP10Q86W26 655 aa12.65□□□□□ -0.38
CD44-207ENST00000425428 ZBTB38Q8NAP3 1195 aaPredicted RBP12.65□□□□□ -0.38
CD44-207ENST00000425428 SH3TC1Q8TE82 1336 aa12.65□□□□□ -0.38
CD44-207ENST00000425428 IBTKQ9P2D0 1353 aaPredicted RBP12.65□□□□□ -0.38
CD44-207ENST00000425428 PCCAP05165 728 aaPredicted RBP12.64□□□□□ -0.39
CD44-207ENST00000425428 IGKV5-2P06315 115 aa12.64□□□□□ -0.39
CD44-207ENST00000425428 R3HDM1Q15032 1099 aaKnown RBP12.64□□□□□ -0.39
CD44-207ENST00000425428 TBC1D9BQ66K14 1250 aa12.64□□□□□ -0.39
CD44-207ENST00000425428 SMIM5Q71RC9 77 aa12.64□□□□□ -0.39
CD44-207ENST00000425428 TNNQ9UQP3 1299 aa12.64□□□□□ -0.39
CD44-207ENST00000425428 UBE3BQ7Z3V4 1068 aa12.64□□□□□ -0.39
CD44-207ENST00000425428 CNBD1Q8NA66 436 aa12.64□□□□□ -0.39
CD44-207ENST00000425428 ZBTB7BO15156 539 aaPredicted RBP12.63□□□□□ -0.39
CD44-207ENST00000425428 HMMRO75330 724 aa12.63□□□□□ -0.39
CD44-207ENST00000425428 NFIXQ14938 502 aa12.62□□□□□ -0.39
CD44-207ENST00000425428 AMIGO3Q86WK7 504 aa12.62□□□□□ -0.39
CD44-207ENST00000425428 EXOC6Q8TAG9 804 aa12.62□□□□□ -0.39
CD44-207ENST00000425428 USP44Q9H0E7 712 aa12.62□□□□□ -0.39
CD44-207ENST00000425428 SOCS7O14512 581 aa12.61□□□□□ -0.39
CD44-207ENST00000425428 SERPINB2P05120 415 aa12.61□□□□□ -0.39
CD44-207ENST00000425428 RTL5Q5HYW3 569 aaPredicted RBP12.61□□□□□ -0.39
CD44-207ENST00000425428 SUSD4Q5VX71 490 aa12.61□□□□□ -0.39
CD44-207ENST00000425428 FAM89AQ96GI7 184 aa12.61□□□□□ -0.39
CD44-207ENST00000425428 MEIS3Q99687 375 aa12.61□□□□□ -0.39
CD44-207ENST00000425428 MTFR1LQ9H019 292 aa12.61□□□□□ -0.39
CD44-207ENST00000425428 BCL2L12Q9HB09 334 aa12.61□□□□□ -0.39
CD44-207ENST00000425428 CHMP3Q9Y3E7 222 aa12.61□□□□□ -0.39
CD44-207ENST00000425428 MYH3P11055 1940 aa12.61□□□□□ -0.39
CD44-207ENST00000425428 CDHR2Q9BYE9 1310 aa12.61□□□□□ -0.39
CD44-207ENST00000425428 H7C1W4 665 aa12.61□□□□□ -0.39
CD44-207ENST00000425428 IRS4O14654 1257 aaPredicted RBP12.61□□□□□ -0.39
CD44-207ENST00000425428 PDE8AO60658 829 aa12.61□□□□□ -0.39
CD44-207ENST00000425428 MMP10P09238 476 aa12.61□□□□□ -0.39
CD44-207ENST00000425428 MSL1Q68DK7 614 aa12.61□□□□□ -0.39
CD44-207ENST00000425428 NLRP3Q96P20 1036 aa12.61□□□□□ -0.39
CD44-207ENST00000425428 ZBTB40Q9NUA8 1239 aa12.61□□□□□ -0.39
CD44-207ENST00000425428 ZBTB47Q9UFB7 747 aaPredicted RBP12.61□□□□□ -0.39
CD44-207ENST00000425428 UTYO14607 1347 aa12.6□□□□□ -0.39
CD44-207ENST00000425428 UBN2Q6ZU65 1347 aa12.6□□□□□ -0.39
CD44-207ENST00000425428 NBPF7P0C2Y1 421 aaPredicted RBP12.6□□□□□ -0.39
CD44-207ENST00000425428 TM4SF1P30408 202 aa12.6□□□□□ -0.39
CD44-207ENST00000425428 RPAP2Q8IXW5 612 aaPredicted RBP12.6□□□□□ -0.39
CD44-207ENST00000425428 LRRFIP2Q9Y608 721 aaKnown RBP12.6□□□□□ -0.39
CD44-207ENST00000425428 PSDA5PKW4 1024 aaPredicted RBP12.59□□□□□ -0.39
CD44-207ENST00000425428 CCDC152Q4G0S7 254 aa12.59□□□□□ -0.39
CD44-207ENST00000425428 TAF7LQ5H9L4 462 aa12.59□□□□□ -0.39
CD44-207ENST00000425428 RWDD1Q9H446 243 aaPredicted RBP12.59□□□□□ -0.39
CD44-207ENST00000425428 NTSR2O95665 410 aa12.58□□□□□ -0.39
CD44-207ENST00000425428 CCDC136Q96JN2 1154 aa12.58□□□□□ -0.39
CD44-207ENST00000425428 PDZRN3Q9UPQ7 1066 aa12.58□□□□□ -0.39
CD44-207ENST00000425428 COL24A1Q17RW2 1714 aa12.58□□□□□ -0.4
CD44-207ENST00000425428 ZBTB7AO95365 584 aa12.58□□□□□ -0.4
CD44-207ENST00000425428 PDE6BP35913 854 aa12.58□□□□□ -0.4
CD44-207ENST00000425428 CCDC57Q2TAC2 916 aa12.58□□□□□ -0.4
CD44-207ENST00000425428 NUTM1Q86Y26 1132 aa12.58□□□□□ -0.4
CD44-207ENST00000425428 PPP4R2Q9NY27 417 aa12.58□□□□□ -0.4
CD44-207ENST00000425428 POLRMTO00411 1230 aaKnown RBP12.57□□□□□ -0.4
CD44-207ENST00000425428 ERFEQ4G0M1 354 aa12.57□□□□□ -0.4
CD44-207ENST00000425428 JARID2Q92833 1246 aaPredicted RBP12.57□□□□□ -0.4
CD44-207ENST00000425428 RPGRQ92834 1020 aaKnown RBP12.57□□□□□ -0.4
CD44-207ENST00000425428 PLA2G12BQ9BX93 195 aa12.57□□□□□ -0.4
CD44-207ENST00000425428 TMX4Q9H1E5 349 aaPredicted RBP12.57□□□□□ -0.4
CD44-207ENST00000425428 C1orf115Q9H7X2 142 aa12.57□□□□□ -0.4
CD44-207ENST00000425428 SPON1Q9HCB6 807 aa12.57□□□□□ -0.4
CD44-207ENST00000425428 SRGAP3O43295 1099 aa12.56□□□□□ -0.4
CD44-207ENST00000425428 IFIT5Q13325 482 aaKnown RBP12.56□□□□□ -0.4
CD44-207ENST00000425428 SLC10A5Q5PT55 438 aa12.56□□□□□ -0.4
CD44-207ENST00000425428 SUCLG2Q96I99 432 aa12.56□□□□□ -0.4
CD44-207ENST00000425428 BICC1Q9H694 974 aaKnown RBP12.56□□□□□ -0.4
CD44-207ENST00000425428 ATF5Q9Y2D1 282 aaPredicted RBP12.56□□□□□ -0.4
CD44-207ENST00000425428 LAMB2P55268 1798 aa12.56□□□□□ -0.4
CD44-207ENST00000425428 ANKRD18BA2A2Z9 1011 aa12.56□□□□□ -0.4
CD44-207ENST00000425428 HCLS1P14317 486 aaPredicted RBP12.56□□□□□ -0.4
CD44-207ENST00000425428 CTSWP56202 376 aa12.56□□□□□ -0.4
CD44-207ENST00000425428 HSP90AB4PQ58FF6 505 aa12.56□□□□□ -0.4
CD44-207ENST00000425428 PRR5LQ6MZQ0 368 aa12.56□□□□□ -0.4
CD44-207ENST00000425428 LMBR1LQ6UX01 489 aa12.56□□□□□ -0.4
CD44-207ENST00000425428 DDX46Q7L014 1031 aaKnown RBP12.56□□□□□ -0.4
CD44-207ENST00000425428 ATP8B2P98198 1209 aa12.55□□□□□ -0.4
CD44-207ENST00000425428 OS9Q13438 667 aaPredicted RBP12.55□□□□□ -0.4
CD44-207ENST00000425428 CDC5LQ99459 802 aaKnown RBP12.55□□□□□ -0.4
CD44-207ENST00000425428 BRIP1Q9BX63 1249 aa12.55□□□□□ -0.4
CD44-207ENST00000425428 GTF3C3Q9Y5Q9 886 aa12.55□□□□□ -0.4
CD44-207ENST00000425428 CASZ1Q86V15 1759 aa12.55□□□□□ -0.4
CD44-207ENST00000425428 DDR1Q08345 913 aa12.54□□□□□ -0.4
CD44-207ENST00000425428 ANKRD44Q8N8A2 993 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms