RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 ATP8B2P98198 1209 aa21.33■■□□□ 1.01
CCDC28B-202ENST00000421922 CLEC4GQ6UXB4 293 aa21.33■■□□□ 1.01
CCDC28B-202ENST00000421922 SUCLG2Q96I99 432 aa21.33■■□□□ 1.01
CCDC28B-202ENST00000421922 NARFQ9UHQ1 456 aa21.33■■□□□ 1.01
CCDC28B-202ENST00000421922 PARP10Q53GL7 1025 aa21.32■■□□□ 1
CCDC28B-202ENST00000421922 SIRT2Q8IXJ6 389 aa21.32■■□□□ 1
CCDC28B-202ENST00000421922 SSFA2P28290 1259 aa21.31■■□□□ 1
CCDC28B-202ENST00000421922 NLRP10Q86W26 655 aa21.31■■□□□ 1
CCDC28B-202ENST00000421922 NIP7Q9Y221 180 aaKnown RBP eCLIP21.31■■□□□ 1
CCDC28B-202ENST00000421922 H7C1W4 665 aa21.3■■□□□ 1
CCDC28B-202ENST00000421922 SRGAP3O43295 1099 aa21.3■■□□□ 1
CCDC28B-202ENST00000421922 PCCAP05165 728 aaPredicted RBP21.3■■□□□ 1
CCDC28B-202ENST00000421922 PPP1R42Q7Z4L9 355 aa21.3■■□□□ 1
CCDC28B-202ENST00000421922 ZNF34Q8IZ26 560 aa21.3■■□□□ 1
CCDC28B-202ENST00000421922 JARID2Q92833 1246 aaPredicted RBP21.3■■□□□ 1
CCDC28B-202ENST00000421922 ARHGEF1Q92888 912 aaKnown RBP21.3■■□□□ 1
CCDC28B-202ENST00000421922 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.29■■□□□ 1
CCDC28B-202ENST00000421922 RTL5Q5HYW3 569 aaPredicted RBP21.29■■□□□ 1
CCDC28B-202ENST00000421922 USPL1Q5W0Q7 1092 aa21.29■■□□□ 1
CCDC28B-202ENST00000421922 SMC5Q8IY18 1101 aa21.29■■□□□ 1
CCDC28B-202ENST00000421922 PROM2Q8N271 834 aa21.29■■□□□ 1
CCDC28B-202ENST00000421922 ZBTB38Q8NAP3 1195 aaPredicted RBP21.29■■□□□ 1
CCDC28B-202ENST00000421922 BICC1Q9H694 974 aaKnown RBP21.29■■□□□ 1
CCDC28B-202ENST00000421922 TFCP2L1Q9NZI6 479 aa21.29■■□□□ 1
CCDC28B-202ENST00000421922 TRMT112Q9UI30 125 aaKnown RBP21.29■■□□□ 1
CCDC28B-202ENST00000421922 PNMA6EA0A0J9YXQ4 647 aa21.28■■□□□ 1
CCDC28B-202ENST00000421922 HSP90B1P14625 803 aaKnown RBP21.28■■□□□ 1
CCDC28B-202ENST00000421922 SMIM5Q71RC9 77 aa21.28■■□□□ 1
CCDC28B-202ENST00000421922 UTP14AQ9BVJ6 771 aaKnown RBP21.28■■□□□ 1
CCDC28B-202ENST00000421922 SRP68Q9UHB9 627 aaKnown RBP21.28■■□□□ 1
CCDC28B-202ENST00000421922 USP42Q9H9J4 1324 aaKnown RBP21.27■■□□□ 1
CCDC28B-202ENST00000421922 MYH3P11055 1940 aa21.27■■□□□ 1
CCDC28B-202ENST00000421922 EN1Q05925 392 aaPredicted RBP21.27■■□□□ 1
CCDC28B-202ENST00000421922 MTX1Q13505 466 aa21.27■■□□□ 1
CCDC28B-202ENST00000421922 DCTPP1Q9H773 170 aa21.27■■□□□ 1
CCDC28B-202ENST00000421922 PDZRN3Q9UPQ7 1066 aa21.27■■□□□ 1
CCDC28B-202ENST00000421922 CHMP3Q9Y3E7 222 aa21.27■■□□□ 1
CCDC28B-202ENST00000421922 UBN2Q6ZU65 1347 aa21.27■□□□□ 0.99
CCDC28B-202ENST00000421922 CDHR2Q9BYE9 1310 aa21.27■□□□□ 0.99
CCDC28B-202ENST00000421922 FAM177BA6PVY3 158 aa21.26■□□□□ 0.99
CCDC28B-202ENST00000421922 CASP7P55210 303 aa21.26■□□□□ 0.99
CCDC28B-202ENST00000421922 FLAD1Q8NFF5 587 aa21.26■□□□□ 0.99
CCDC28B-202ENST00000421922 SSH3Q8TE77 659 aa21.26■□□□□ 0.99
CCDC28B-202ENST00000421922 FAM89AQ96GI7 184 aa21.26■□□□□ 0.99
CCDC28B-202ENST00000421922 TUBGCP6Q96RT7 1819 aa21.25■□□□□ 0.99
CCDC28B-202ENST00000421922 MSH5O43196 834 aa21.25■□□□□ 0.99
CCDC28B-202ENST00000421922 OS9Q13438 667 aaPredicted RBP21.25■□□□□ 0.99
CCDC28B-202ENST00000421922 POLA2Q14181 598 aa21.25■□□□□ 0.99
CCDC28B-202ENST00000421922 EZH2Q15910 746 aaKnown RBP21.25■□□□□ 0.99
CCDC28B-202ENST00000421922 HSP90AB4PQ58FF6 505 aa21.25■□□□□ 0.99
CCDC28B-202ENST00000421922 ANKRD45Q5TZF3 282 aa21.25■□□□□ 0.99
CCDC28B-202ENST00000421922 BICDL1Q6ZP65 573 aa21.25■□□□□ 0.99
CCDC28B-202ENST00000421922 SETDB2Q96T68 719 aa21.25■□□□□ 0.99
CCDC28B-202ENST00000421922 SH3TC1Q8TE82 1336 aa21.25■□□□□ 0.99
CCDC28B-202ENST00000421922 CAMKK2Q96RR4 588 aa21.24■□□□□ 0.99
CCDC28B-202ENST00000421922 LAMB2P55268 1798 aa21.23■□□□□ 0.99
CCDC28B-202ENST00000421922 APBB1O00213 710 aa21.23■□□□□ 0.99
CCDC28B-202ENST00000421922 IRS4O14654 1257 aaPredicted RBP21.23■□□□□ 0.99
CCDC28B-202ENST00000421922 NPHP1O15259 732 aa21.23■□□□□ 0.99
CCDC28B-202ENST00000421922 GTF2E1P29083 439 aaPredicted RBP21.23■□□□□ 0.99
CCDC28B-202ENST00000421922 RGS3P49796 1198 aa21.23■□□□□ 0.99
CCDC28B-202ENST00000421922 ZNF827Q17R98 1081 aa21.23■□□□□ 0.99
CCDC28B-202ENST00000421922 SUSD4Q5VX71 490 aa21.23■□□□□ 0.99
CCDC28B-202ENST00000421922 AMIGO3Q86WK7 504 aa21.23■□□□□ 0.99
CCDC28B-202ENST00000421922 KAZALD1Q96I82 304 aa21.23■□□□□ 0.99
CCDC28B-202ENST00000421922 NYXQ9GZU5 481 aa21.23■□□□□ 0.99
CCDC28B-202ENST00000421922 STK32BQ9NY57 414 aa21.23■□□□□ 0.99
CCDC28B-202ENST00000421922 COL24A1Q17RW2 1714 aa21.23■□□□□ 0.99
CCDC28B-202ENST00000421922 SURF6O75683 361 aaKnown RBP21.22■□□□□ 0.99
CCDC28B-202ENST00000421922 NUCB1Q02818 461 aa21.22■□□□□ 0.99
CCDC28B-202ENST00000421922 R3HDM1Q15032 1099 aaKnown RBP21.22■□□□□ 0.99
CCDC28B-202ENST00000421922 EPHA10Q5JZY3 1008 aa21.22■□□□□ 0.99
CCDC28B-202ENST00000421922 TBC1D9BQ66K14 1250 aa21.22■□□□□ 0.99
CCDC28B-202ENST00000421922 LMBR1LQ6UX01 489 aa21.22■□□□□ 0.99
CCDC28B-202ENST00000421922 AKT1S1Q96B36 256 aa21.22■□□□□ 0.99
CCDC28B-202ENST00000421922 EXOC6BQ9Y2D4 811 aa21.22■□□□□ 0.99
CCDC28B-202ENST00000421922 RABL6Q3YEC7 729 aaPredicted RBP21.21■□□□□ 0.99
CCDC28B-202ENST00000421922 CHD1LQ86WJ1 897 aa21.21■□□□□ 0.99
CCDC28B-202ENST00000421922 PLA2G12BQ9BX93 195 aa21.21■□□□□ 0.99
CCDC28B-202ENST00000421922 BCL2L12Q9HB09 334 aa21.21■□□□□ 0.99
CCDC28B-202ENST00000421922 RAB11FIP3O75154 756 aa21.21■□□□□ 0.99
CCDC28B-202ENST00000421922 NBPF5PQ86XG9 351 aaPredicted RBP21.21■□□□□ 0.99
CCDC28B-202ENST00000421922 LNPKQ9C0E8 428 aa21.21■□□□□ 0.99
CCDC28B-202ENST00000421922 BCL11AQ9H165 835 aa21.21■□□□□ 0.99
CCDC28B-202ENST00000421922 CARMIL3Q8ND23 1372 aa21.2■□□□□ 0.98
CCDC28B-202ENST00000421922 PDE8AO60658 829 aa21.2■□□□□ 0.98
CCDC28B-202ENST00000421922 NTSR2O95665 410 aa21.2■□□□□ 0.98
CCDC28B-202ENST00000421922 FOXO4P98177 505 aa21.2■□□□□ 0.98
CCDC28B-202ENST00000421922 ERC1Q8IUD2 1116 aa21.2■□□□□ 0.98
CCDC28B-202ENST00000421922 LRRCC1Q9C099 1032 aa21.2■□□□□ 0.98
CCDC28B-202ENST00000421922 G3BP1Q13283 466 aaKnown RBP eCLIP21.19■□□□□ 0.98
CCDC28B-202ENST00000421922 QSER1Q2KHR3 1735 aa21.18■□□□□ 0.98
CCDC28B-202ENST00000421922 DDX60Q8IY21 1712 aaKnown RBP21.18■□□□□ 0.98
CCDC28B-202ENST00000421922 CTSWP56202 376 aa21.18■□□□□ 0.98
CCDC28B-202ENST00000421922 CCDC57Q2TAC2 916 aa21.18■□□□□ 0.98
CCDC28B-202ENST00000421922 TAF7LQ5H9L4 462 aa21.18■□□□□ 0.98
CCDC28B-202ENST00000421922 GYS1P13807 737 aa21.17■□□□□ 0.98
CCDC28B-202ENST00000421922 TPTE2Q6XPS3 522 aa21.17■□□□□ 0.98
CCDC28B-202ENST00000421922 KIF1BPQ96EK5 621 aa21.17■□□□□ 0.98
CCDC28B-202ENST00000421922 SLC15A2Q16348 729 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms