RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 HDAC5Q9UQL6 1122 aa8.3□□□□□ -1.08
VPS41-204ENST00000413141 U3KPZ7 1027 aaPredicted RBP8.3□□□□□ -1.08
VPS41-204ENST00000413141 A0A087WZG4 1122 aa8.29□□□□□ -1.08
VPS41-204ENST00000413141 GNPATO15228 680 aa8.29□□□□□ -1.08
VPS41-204ENST00000413141 CAMTA2O94983 1202 aa8.29□□□□□ -1.08
VPS41-204ENST00000413141 NUCB1Q02818 461 aa8.29□□□□□ -1.08
VPS41-204ENST00000413141 TRIM28Q13263 835 aaKnown RBP8.29□□□□□ -1.08
VPS41-204ENST00000413141 POLA2Q14181 598 aa8.29□□□□□ -1.08
VPS41-204ENST00000413141 UBE3BQ7Z3V4 1068 aa8.29□□□□□ -1.08
VPS41-204ENST00000413141 PPP1R42Q7Z4L9 355 aa8.29□□□□□ -1.08
VPS41-204ENST00000413141 SSH3Q8TE77 659 aa8.29□□□□□ -1.08
VPS41-204ENST00000413141 ARXQ96QS3 562 aa8.29□□□□□ -1.08
VPS41-204ENST00000413141 BICC1Q9H694 974 aaKnown RBP8.29□□□□□ -1.08
VPS41-204ENST00000413141 UBN2Q6ZU65 1347 aa8.29□□□□□ -1.08
VPS41-204ENST00000413141 H7C1W4 665 aa8.28□□□□□ -1.08
VPS41-204ENST00000413141 RGL2O15211 777 aa8.28□□□□□ -1.08
VPS41-204ENST00000413141 SRGAP3O43295 1099 aa8.28□□□□□ -1.08
VPS41-204ENST00000413141 RPS6KA4O75676 772 aa8.28□□□□□ -1.08
VPS41-204ENST00000413141 RGS3P49796 1198 aa8.28□□□□□ -1.08
VPS41-204ENST00000413141 RABL6Q3YEC7 729 aaPredicted RBP8.28□□□□□ -1.08
VPS41-204ENST00000413141 NLRP10Q86W26 655 aa8.28□□□□□ -1.08
VPS41-204ENST00000413141 CHD1LQ86WJ1 897 aa8.28□□□□□ -1.08
VPS41-204ENST00000413141 AMIGO3Q86WK7 504 aa8.28□□□□□ -1.08
VPS41-204ENST00000413141 ZNF34Q8IZ26 560 aa8.28□□□□□ -1.08
VPS41-204ENST00000413141 AK7Q96M32 723 aa8.28□□□□□ -1.08
VPS41-204ENST00000413141 TUBGCP6Q96RT7 1819 aa8.28□□□□□ -1.08
VPS41-204ENST00000413141 CDHR2Q9BYE9 1310 aa8.28□□□□□ -1.08
VPS41-204ENST00000413141 DDX60Q8IY21 1712 aaKnown RBP8.27□□□□□ -1.09
VPS41-204ENST00000413141 PLSCR1O15162 318 aa8.27□□□□□ -1.09
VPS41-204ENST00000413141 PCCAP05165 728 aaPredicted RBP8.27□□□□□ -1.09
VPS41-204ENST00000413141 GPTP24298 496 aa8.27□□□□□ -1.09
VPS41-204ENST00000413141 PDE4AP27815 886 aa8.27□□□□□ -1.09
VPS41-204ENST00000413141 TXNRD1Q16881 649 aa8.27□□□□□ -1.09
VPS41-204ENST00000413141 EPHA10Q5JZY3 1008 aa8.27□□□□□ -1.09
VPS41-204ENST00000413141 ZBTB38Q8NAP3 1195 aaPredicted RBP8.27□□□□□ -1.09
VPS41-204ENST00000413141 JARID2Q92833 1246 aaPredicted RBP8.27□□□□□ -1.09
VPS41-204ENST00000413141 EXOC6BQ9Y2D4 811 aa8.27□□□□□ -1.09
VPS41-204ENST00000413141 ZNF652Q9Y2D9 606 aa8.27□□□□□ -1.09
VPS41-204ENST00000413141 RTCBQ9Y3I0 505 aaKnown RBP8.27□□□□□ -1.09
VPS41-204ENST00000413141 LRP5O75197 1615 aa8.27□□□□□ -1.09
VPS41-204ENST00000413141 USP42Q9H9J4 1324 aaKnown RBP8.27□□□□□ -1.09
VPS41-204ENST00000413141 APBA3O96018 575 aa8.26□□□□□ -1.09
VPS41-204ENST00000413141 PARP10Q53GL7 1025 aa8.26□□□□□ -1.09
VPS41-204ENST00000413141 ANKRD45Q5TZF3 282 aa8.26□□□□□ -1.09
VPS41-204ENST00000413141 CLEC4GQ6UXB4 293 aa8.26□□□□□ -1.09
VPS41-204ENST00000413141 SMIM5Q71RC9 77 aa8.26□□□□□ -1.09
VPS41-204ENST00000413141 PROM2Q8N271 834 aa8.26□□□□□ -1.09
VPS41-204ENST00000413141 LNPKQ9C0E8 428 aa8.26□□□□□ -1.09
VPS41-204ENST00000413141 NARFQ9UHQ1 456 aa8.26□□□□□ -1.09
VPS41-204ENST00000413141 MYH3P11055 1940 aa8.26□□□□□ -1.09
VPS41-204ENST00000413141 PHF14O94880 888 aa8.25□□□□□ -1.09
VPS41-204ENST00000413141 HMGB2P26583 209 aaKnown RBP8.25□□□□□ -1.09
VPS41-204ENST00000413141 FOXO4P98177 505 aa8.25□□□□□ -1.09
VPS41-204ENST00000413141 RTL5Q5HYW3 569 aaPredicted RBP8.25□□□□□ -1.09
VPS41-204ENST00000413141 USPL1Q5W0Q7 1092 aa8.25□□□□□ -1.09
VPS41-204ENST00000413141 FAM89AQ96GI7 184 aa8.25□□□□□ -1.09
VPS41-204ENST00000413141 PLA2G12BQ9BX93 195 aa8.25□□□□□ -1.09
VPS41-204ENST00000413141 BCL2L12Q9HB09 334 aa8.25□□□□□ -1.09
VPS41-204ENST00000413141 SRP68Q9UHB9 627 aaKnown RBP8.25□□□□□ -1.09
VPS41-204ENST00000413141 NIP7Q9Y221 180 aaKnown RBP eCLIP8.25□□□□□ -1.09
VPS41-204ENST00000413141 NOP58Q9Y2X3 529 aaKnown RBP8.25□□□□□ -1.09
VPS41-204ENST00000413141 CASZ1Q86V15 1759 aa8.25□□□□□ -1.09
VPS41-204ENST00000413141 QSER1Q2KHR3 1735 aa8.24□□□□□ -1.09
VPS41-204ENST00000413141 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.24□□□□□ -1.09
VPS41-204ENST00000413141 APBB1O00213 710 aa8.24□□□□□ -1.09
VPS41-204ENST00000413141 RAB11FIP3O75154 756 aa8.24□□□□□ -1.09
VPS41-204ENST00000413141 ZPR1O75312 459 aa8.24□□□□□ -1.09
VPS41-204ENST00000413141 SURF6O75683 361 aaKnown RBP8.24□□□□□ -1.09
VPS41-204ENST00000413141 NTSR2O95665 410 aa8.24□□□□□ -1.09
VPS41-204ENST00000413141 SSFA2P28290 1259 aa8.24□□□□□ -1.09
VPS41-204ENST00000413141 RFX5P48382 616 aaPredicted RBP8.24□□□□□ -1.09
VPS41-204ENST00000413141 ZNF827Q17R98 1081 aa8.24□□□□□ -1.09
VPS41-204ENST00000413141 TRAPPC3LQ5T215 181 aa8.24□□□□□ -1.09
VPS41-204ENST00000413141 SUSD4Q5VX71 490 aa8.24□□□□□ -1.09
VPS41-204ENST00000413141 LMBR1LQ6UX01 489 aa8.24□□□□□ -1.09
VPS41-204ENST00000413141 ILDR1Q86SU0 546 aaPredicted RBP8.24□□□□□ -1.09
VPS41-204ENST00000413141 ARHGEF1Q92888 912 aaKnown RBP8.24□□□□□ -1.09
VPS41-204ENST00000413141 LRRCC1Q9C099 1032 aa8.24□□□□□ -1.09
VPS41-204ENST00000413141 TRMT112Q9UI30 125 aaKnown RBP8.24□□□□□ -1.09
VPS41-204ENST00000413141 PA2G4Q9UQ80 394 aaKnown RBP8.24□□□□□ -1.09
VPS41-204ENST00000413141 SH3TC1Q8TE82 1336 aa8.24□□□□□ -1.09
VPS41-204ENST00000413141 IRS4O14654 1257 aaPredicted RBP8.23□□□□□ -1.09
VPS41-204ENST00000413141 SMARCA5O60264 1052 aaPredicted RBP8.23□□□□□ -1.09
VPS41-204ENST00000413141 RFC4P35249 363 aa8.23□□□□□ -1.09
VPS41-204ENST00000413141 CTSWP56202 376 aa8.23□□□□□ -1.09
VPS41-204ENST00000413141 HSP90AB4PQ58FF6 505 aa8.23□□□□□ -1.09
VPS41-204ENST00000413141 TBC1D9BQ66K14 1250 aa8.23□□□□□ -1.09
VPS41-204ENST00000413141 SYNE4Q8N205 404 aa8.23□□□□□ -1.09
VPS41-204ENST00000413141 RHPN1Q8TCX5 695 aa8.23□□□□□ -1.09
VPS41-204ENST00000413141 AKT1S1Q96B36 256 aa8.23□□□□□ -1.09
VPS41-204ENST00000413141 KIF1BPQ96EK5 621 aa8.23□□□□□ -1.09
VPS41-204ENST00000413141 UTP14AQ9BVJ6 771 aaKnown RBP8.23□□□□□ -1.09
VPS41-204ENST00000413141 COPRSQ9NQ92 184 aa8.23□□□□□ -1.09
VPS41-204ENST00000413141 ZBTB47Q9UFB7 747 aaPredicted RBP8.23□□□□□ -1.09
VPS41-204ENST00000413141 TNRC6CQ9HCJ0 1690 aaKnown RBP8.23□□□□□ -1.09
VPS41-204ENST00000413141 SALL3Q9BXA9 1300 aa8.23□□□□□ -1.09
VPS41-204ENST00000413141 CARMIL3Q8ND23 1372 aa8.22□□□□□ -1.09
VPS41-204ENST00000413141 ABCC12Q96J65 1359 aa8.22□□□□□ -1.09
VPS41-204ENST00000413141 PDE8AO60658 829 aa8.22□□□□□ -1.09
VPS41-204ENST00000413141 CSF1RP07333 972 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms