RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 USPL1Q5W0Q7 1092 aa14.2□□□□□ -0.14
LINC00539-201ENST00000411525 C16orf71Q8IYS4 520 aaPredicted RBP14.2□□□□□ -0.14
LINC00539-201ENST00000411525 STARD3NLO95772 234 aa14.19□□□□□ -0.14
LINC00539-201ENST00000411525 XAGE3Q8WTP9 111 aa14.19□□□□□ -0.14
LINC00539-201ENST00000411525 DNAAF4Q8WXU2 420 aa14.19□□□□□ -0.14
LINC00539-201ENST00000411525 COL15A1P39059 1388 aa14.19□□□□□ -0.14
LINC00539-201ENST00000411525 PI4KAP2A4QPH2 592 aa14.18□□□□□ -0.14
LINC00539-201ENST00000411525 NBPF26B4DH59 902 aa14.18□□□□□ -0.14
LINC00539-201ENST00000411525 PIP4K2AP48426 406 aaPredicted RBP14.18□□□□□ -0.14
LINC00539-201ENST00000411525 NBPF10Q6P3W6 841 aaKnown RBP14.18□□□□□ -0.14
LINC00539-201ENST00000411525 KSR2Q6VAB6 950 aa14.18□□□□□ -0.14
LINC00539-201ENST00000411525 NBPF15Q8N660 670 aa14.18□□□□□ -0.14
LINC00539-201ENST00000411525 PI4KAP1Q8N8J0 262 aa14.18□□□□□ -0.14
LINC00539-201ENST00000411525 RBM46Q8TBY0 533 aaKnown RBP14.18□□□□□ -0.14
LINC00539-201ENST00000411525 PCDHB15Q9Y5E8 787 aa14.18□□□□□ -0.14
LINC00539-201ENST00000411525 NRXN2Q9P2S2 1712 aa14.18□□□□□ -0.14
LINC00539-201ENST00000411525 DLEC1Q9Y238 1755 aa14.17□□□□□ -0.14
LINC00539-201ENST00000411525 A0A087WZG4 1122 aa14.17□□□□□ -0.14
LINC00539-201ENST00000411525 A1BGP04217 495 aa14.17□□□□□ -0.14
LINC00539-201ENST00000411525 CHRNA5P30532 468 aa14.17□□□□□ -0.14
LINC00539-201ENST00000411525 AIMP1Q12904 312 aaKnown RBP14.17□□□□□ -0.14
LINC00539-201ENST00000411525 CENPQQ7L2Z9 268 aaPredicted RBP14.17□□□□□ -0.14
LINC00539-201ENST00000411525 COPS6Q7L5N1 327 aa14.17□□□□□ -0.14
LINC00539-201ENST00000411525 NMRK2Q9NPI5 230 aa14.17□□□□□ -0.14
LINC00539-201ENST00000411525 RNF181Q9P0P0 153 aa14.17□□□□□ -0.14
LINC00539-201ENST00000411525 MAP3K2Q9Y2U5 619 aa14.17□□□□□ -0.14
LINC00539-201ENST00000411525 TNRC6CQ9HCJ0 1690 aaKnown RBP14.17□□□□□ -0.14
LINC00539-201ENST00000411525 ZC3H4Q9UPT8 1303 aaKnown RBP14.16□□□□□ -0.14
LINC00539-201ENST00000411525 CCDC88AQ3V6T2 1871 aa14.16□□□□□ -0.14
LINC00539-201ENST00000411525 NFIXQ14938 502 aa14.16□□□□□ -0.14
LINC00539-201ENST00000411525 MEIS3Q99687 375 aa14.16□□□□□ -0.14
LINC00539-201ENST00000411525 SRCIN1Q9C0H9 1055 aa14.16□□□□□ -0.14
LINC00539-201ENST00000411525 ZBTB1Q9Y2K1 713 aa14.16□□□□□ -0.14
LINC00539-201ENST00000411525 IBTKQ9P2D0 1353 aaPredicted RBP14.15□□□□□ -0.14
LINC00539-201ENST00000411525 SERPINB2P05120 415 aa14.15□□□□□ -0.14
LINC00539-201ENST00000411525 FSTL1Q12841 308 aa14.15□□□□□ -0.14
LINC00539-201ENST00000411525 BEND3Q5T5X7 828 aa14.15□□□□□ -0.14
LINC00539-201ENST00000411525 RIC3Q7Z5B4 369 aa14.15□□□□□ -0.14
LINC00539-201ENST00000411525 C1orf115Q9H7X2 142 aa14.15□□□□□ -0.14
LINC00539-201ENST00000411525 PDZRN3Q9UPQ7 1066 aa14.15□□□□□ -0.14
LINC00539-201ENST00000411525 ANKRD13DQ6ZTN6 518 aa14.14□□□□□ -0.15
LINC00539-201ENST00000411525 NPM2Q86SE8 214 aaKnown RBP14.14□□□□□ -0.15
LINC00539-201ENST00000411525 PLBD2Q8NHP8 589 aa14.14□□□□□ -0.15
LINC00539-201ENST00000411525 WDR90Q96KV7 1748 aa14.14□□□□□ -0.15
LINC00539-201ENST00000411525 H0YIN7 160 aa14.13□□□□□ -0.15
LINC00539-201ENST00000411525 ALDH1L1O75891 902 aa14.13□□□□□ -0.15
LINC00539-201ENST00000411525 IGHDP01880 384 aa14.13□□□□□ -0.15
LINC00539-201ENST00000411525 GNAI3P08754 354 aa14.13□□□□□ -0.15
LINC00539-201ENST00000411525 EIF5P55010 431 aaKnown RBP14.13□□□□□ -0.15
LINC00539-201ENST00000411525 HDAC1Q13547 482 aaPredicted RBP14.13□□□□□ -0.15
LINC00539-201ENST00000411525 TTLL6Q8N841 843 aa14.13□□□□□ -0.15
LINC00539-201ENST00000411525 LINS1Q8NG48 757 aa14.13□□□□□ -0.15
LINC00539-201ENST00000411525 METTL22Q9BUU2 404 aaPredicted RBP14.13□□□□□ -0.15
LINC00539-201ENST00000411525 RWDD1Q9H446 243 aaPredicted RBP14.13□□□□□ -0.15
LINC00539-201ENST00000411525 ANKRD36CQ5JPF3 1778 aa14.12□□□□□ -0.15
LINC00539-201ENST00000411525 NEXNQ0ZGT2 675 aa14.12□□□□□ -0.15
LINC00539-201ENST00000411525 TTLL7Q6ZT98 887 aa14.12□□□□□ -0.15
LINC00539-201ENST00000411525 DNAJC5GQ8N7S2 189 aa14.12□□□□□ -0.15
LINC00539-201ENST00000411525 BCL2L12Q9HB09 334 aa14.12□□□□□ -0.15
LINC00539-201ENST00000411525 GNAI2P04899 355 aa14.11□□□□□ -0.15
LINC00539-201ENST00000411525 LMNB1P20700 586 aa14.11□□□□□ -0.15
LINC00539-201ENST00000411525 IL6STP40189 918 aaPredicted RBP14.11□□□□□ -0.15
LINC00539-201ENST00000411525 KIF6Q6ZMV9 814 aa14.11□□□□□ -0.15
LINC00539-201ENST00000411525 C2CD5Q86YS7 1000 aa14.11□□□□□ -0.15
LINC00539-201ENST00000411525 MYD88Q99836 296 aa14.11□□□□□ -0.15
LINC00539-201ENST00000411525 RRAGCQ9HB90 399 aa14.11□□□□□ -0.15
LINC00539-201ENST00000411525 ZNF330Q9Y3S2 320 aaPredicted RBP14.11□□□□□ -0.15
LINC00539-201ENST00000411525 DICER1Q9UPY3 1922 aaKnown RBP14.11□□□□□ -0.15
LINC00539-201ENST00000411525 BCORQ6W2J9 1755 aa14.1□□□□□ -0.15
LINC00539-201ENST00000411525 UBTFL1P0CB47 393 aaPredicted RBP14.1□□□□□ -0.15
LINC00539-201ENST00000411525 PDE6BP35913 854 aa14.1□□□□□ -0.15
LINC00539-201ENST00000411525 CWF19L2Q2TBE0 894 aaKnown RBP14.1□□□□□ -0.15
LINC00539-201ENST00000411525 SMC1BQ8NDV3 1235 aa14.1□□□□□ -0.15
LINC00539-201ENST00000411525 USP44Q9H0E7 712 aa14.1□□□□□ -0.15
LINC00539-201ENST00000411525 SCN7AQ01118 1682 aa14.1□□□□□ -0.15
LINC00539-201ENST00000411525 NEURL1BA8MQ27 555 aa14.09□□□□□ -0.15
LINC00539-201ENST00000411525 IGKV5-2P06315 115 aa14.09□□□□□ -0.15
LINC00539-201ENST00000411525 CEP85Q6P2H3 762 aa14.09□□□□□ -0.15
LINC00539-201ENST00000411525 BICDL1Q6ZP65 573 aa14.09□□□□□ -0.15
LINC00539-201ENST00000411525 RPAP2Q8IXW5 612 aaPredicted RBP14.09□□□□□ -0.15
LINC00539-201ENST00000411525 ANKRD44Q8N8A2 993 aa14.09□□□□□ -0.15
LINC00539-201ENST00000411525 BRIP1Q9BX63 1249 aa14.09□□□□□ -0.15
LINC00539-201ENST00000411525 ZBTB3Q9H5J0 574 aa14.09□□□□□ -0.15
LINC00539-201ENST00000411525 ANKRD31Q8N7Z5 1873 aa14.09□□□□□ -0.15
LINC00539-201ENST00000411525 MAP3K15Q6ZN16 1313 aa14.09□□□□□ -0.15
LINC00539-201ENST00000411525 TIAM2Q8IVF5 1701 aa14.08□□□□□ -0.16
LINC00539-201ENST00000411525 GLTPD2A6NH11 291 aa14.08□□□□□ -0.16
LINC00539-201ENST00000411525 GRM8O00222 908 aa14.08□□□□□ -0.16
LINC00539-201ENST00000411525 VEGFAP15692 232 aaPredicted RBP14.08□□□□□ -0.16
LINC00539-201ENST00000411525 RASSF7Q02833 373 aa14.08□□□□□ -0.16
LINC00539-201ENST00000411525 LRRFIP2Q9Y608 721 aaKnown RBP14.08□□□□□ -0.16
LINC00539-201ENST00000411525 UTYO14607 1347 aa14.08□□□□□ -0.16
LINC00539-201ENST00000411525 CARMIL3Q8ND23 1372 aa14.08□□□□□ -0.16
LINC00539-201ENST00000411525 NPHP1O15259 732 aa14.07□□□□□ -0.16
LINC00539-201ENST00000411525 TBC1D9BQ66K14 1250 aa14.07□□□□□ -0.16
LINC00539-201ENST00000411525 DPY19L2Q6NUT2 758 aa14.07□□□□□ -0.16
LINC00539-201ENST00000411525 SIRT2Q8IXJ6 389 aa14.07□□□□□ -0.16
LINC00539-201ENST00000411525 KLRG1Q96E93 195 aa14.07□□□□□ -0.16
LINC00539-201ENST00000411525 SETDB2Q96T68 719 aa14.07□□□□□ -0.16
LINC00539-201ENST00000411525 C9orf78Q9NZ63 289 aaPredicted RBP14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms