RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 CASP7P55210 303 aa15.45■□□□□ 0.06
CHMP3-204ENST00000409727 HSP90AB3PQ58FF7 597 aa15.45■□□□□ 0.06
CHMP3-204ENST00000409727 PA2G4Q9UQ80 394 aaKnown RBP15.45■□□□□ 0.06
CHMP3-204ENST00000409727 LY75O60449 1722 aa15.45■□□□□ 0.06
CHMP3-204ENST00000409727 MTX1Q13505 466 aa15.44■□□□□ 0.06
CHMP3-204ENST00000409727 FAM89AQ96GI7 184 aa15.44■□□□□ 0.06
CHMP3-204ENST00000409727 LRRC4BQ9NT99 713 aa15.44■□□□□ 0.06
CHMP3-204ENST00000409727 CHMP3Q9Y3E7 222 aa15.44■□□□□ 0.06
CHMP3-204ENST00000409727 IBTKQ9P2D0 1353 aaPredicted RBP15.44■□□□□ 0.06
CHMP3-204ENST00000409727 FAM177BA6PVY3 158 aa15.44■□□□□ 0.06
CHMP3-204ENST00000409727 CAMTA2O94983 1202 aa15.44■□□□□ 0.06
CHMP3-204ENST00000409727 OS9Q13438 667 aaPredicted RBP15.44■□□□□ 0.06
CHMP3-204ENST00000409727 NLRP10Q86W26 655 aa15.44■□□□□ 0.06
CHMP3-204ENST00000409727 LRRCC1Q9C099 1032 aa15.44■□□□□ 0.06
CHMP3-204ENST00000409727 PHF14O94880 888 aa15.43■□□□□ 0.06
CHMP3-204ENST00000409727 SYNE4Q8N205 404 aa15.43■□□□□ 0.06
CHMP3-204ENST00000409727 KLHDC4Q8TBB5 520 aa15.43■□□□□ 0.06
CHMP3-204ENST00000409727 OTUD7AQ8TE49 926 aaPredicted RBP15.43■□□□□ 0.06
CHMP3-204ENST00000409727 NUP98P52948 1817 aa15.43■□□□□ 0.06
CHMP3-204ENST00000409727 UBN2Q6ZU65 1347 aa15.42■□□□□ 0.06
CHMP3-204ENST00000409727 TRIM28Q13263 835 aaKnown RBP15.42■□□□□ 0.06
CHMP3-204ENST00000409727 SIL1Q9H173 461 aa15.42■□□□□ 0.06
CHMP3-204ENST00000409727 FOXO4P98177 505 aa15.42■□□□□ 0.06
CHMP3-204ENST00000409727 RC3H1Q5TC82 1133 aaKnown RBP15.42■□□□□ 0.06
CHMP3-204ENST00000409727 LMBR1LQ6UX01 489 aa15.42■□□□□ 0.06
CHMP3-204ENST00000409727 AMIGO3Q86WK7 504 aa15.42■□□□□ 0.06
CHMP3-204ENST00000409727 ZBTB38Q8NAP3 1195 aaPredicted RBP15.42■□□□□ 0.06
CHMP3-204ENST00000409727 IL1RAPL2Q9NP60 686 aa15.42■□□□□ 0.06
CHMP3-204ENST00000409727 RTCBQ9Y3I0 505 aaKnown RBP15.42■□□□□ 0.06
CHMP3-204ENST00000409727 RPS6KA4O75676 772 aa15.41■□□□□ 0.06
CHMP3-204ENST00000409727 FAM161AQ3B820 660 aa15.41■□□□□ 0.06
CHMP3-204ENST00000409727 ZNF34Q8IZ26 560 aa15.41■□□□□ 0.06
CHMP3-204ENST00000409727 AK7Q96M32 723 aa15.41■□□□□ 0.06
CHMP3-204ENST00000409727 TRMT112Q9UI30 125 aaKnown RBP15.41■□□□□ 0.06
CHMP3-204ENST00000409727 ANKRD36CQ5JPF3 1778 aa15.41■□□□□ 0.06
CHMP3-204ENST00000409727 APBA3O96018 575 aa15.4■□□□□ 0.06
CHMP3-204ENST00000409727 PCCAP05165 728 aaPredicted RBP15.4■□□□□ 0.06
CHMP3-204ENST00000409727 CCDC85AQ96PX6 553 aaPredicted RBP15.4■□□□□ 0.06
CHMP3-204ENST00000409727 SRP68Q9UHB9 627 aaKnown RBP15.4■□□□□ 0.06
CHMP3-204ENST00000409727 NIP7Q9Y221 180 aaKnown RBP eCLIP15.4■□□□□ 0.06
CHMP3-204ENST00000409727 TAF1LQ8IZX4 1826 aa15.4■□□□□ 0.06
CHMP3-204ENST00000409727 C4BP0C0L5 1744 aa15.4■□□□□ 0.06
CHMP3-204ENST00000409727 RAB11FIP3O75154 756 aa15.4■□□□□ 0.06
CHMP3-204ENST00000409727 RABL6Q3YEC7 729 aaPredicted RBP15.4■□□□□ 0.06
CHMP3-204ENST00000409727 C8orf34Q49A92 452 aa15.4■□□□□ 0.06
CHMP3-204ENST00000409727 PLEKHM2Q8IWE5 1019 aa15.4■□□□□ 0.06
CHMP3-204ENST00000409727 RHPN1Q8TCX5 695 aa15.4■□□□□ 0.06
CHMP3-204ENST00000409727 BACH2Q9BYV9 841 aa15.4■□□□□ 0.06
CHMP3-204ENST00000409727 ZNF652Q9Y2D9 606 aa15.4■□□□□ 0.06
CHMP3-204ENST00000409727 RBM19Q9Y4C8 960 aaKnown RBP15.4■□□□□ 0.06
CHMP3-204ENST00000409727 HSP90AB4PQ58FF6 505 aa15.39■□□□□ 0.05
CHMP3-204ENST00000409727 SUSD4Q5VX71 490 aa15.39■□□□□ 0.05
CHMP3-204ENST00000409727 USPL1Q5W0Q7 1092 aa15.39■□□□□ 0.05
CHMP3-204ENST00000409727 BICDL1Q6ZP65 573 aa15.39■□□□□ 0.05
CHMP3-204ENST00000409727 NOP58Q9Y2X3 529 aaKnown RBP15.39■□□□□ 0.05
CHMP3-204ENST00000409727 G3BP1Q13283 466 aaKnown RBP eCLIP15.38■□□□□ 0.05
CHMP3-204ENST00000409727 SLC27A3Q5K4L6 730 aa15.38■□□□□ 0.05
CHMP3-204ENST00000409727 KIF1BPQ96EK5 621 aa15.38■□□□□ 0.05
CHMP3-204ENST00000409727 ZPR1O75312 459 aa15.37■□□□□ 0.05
CHMP3-204ENST00000409727 TXNRD1Q16881 649 aa15.37■□□□□ 0.05
CHMP3-204ENST00000409727 TSHZ3Q63HK5 1081 aa15.37■□□□□ 0.05
CHMP3-204ENST00000409727 ARHGEF1Q92888 912 aaKnown RBP15.37■□□□□ 0.05
CHMP3-204ENST00000409727 IRS4O14654 1257 aaPredicted RBP15.37■□□□□ 0.05
CHMP3-204ENST00000409727 RFX5P48382 616 aaPredicted RBP15.37■□□□□ 0.05
CHMP3-204ENST00000409727 NUTM1Q86Y26 1132 aa15.37■□□□□ 0.05
CHMP3-204ENST00000409727 PROM2Q8N271 834 aa15.37■□□□□ 0.05
CHMP3-204ENST00000409727 BCORQ6W2J9 1755 aa15.36■□□□□ 0.05
CHMP3-204ENST00000409727 RFC4P35249 363 aa15.36■□□□□ 0.05
CHMP3-204ENST00000409727 PTPN12Q05209 780 aaKnown RBP15.36■□□□□ 0.05
CHMP3-204ENST00000409727 TRAPPC3LQ5T215 181 aa15.36■□□□□ 0.05
CHMP3-204ENST00000409727 UTP14AQ9BVJ6 771 aaKnown RBP15.36■□□□□ 0.05
CHMP3-204ENST00000409727 NARFQ9UHQ1 456 aa15.36■□□□□ 0.05
CHMP3-204ENST00000409727 CDHR2Q9BYE9 1310 aa15.36■□□□□ 0.05
CHMP3-204ENST00000409727 TBC1D9BQ66K14 1250 aa15.35■□□□□ 0.05
CHMP3-204ENST00000409727 CLEC4GQ6UXB4 293 aa15.35■□□□□ 0.05
CHMP3-204ENST00000409727 ZNF594Q96JF6 807 aaPredicted RBP15.35■□□□□ 0.05
CHMP3-204ENST00000409727 BCL2L12Q9HB09 334 aa15.35■□□□□ 0.05
CHMP3-204ENST00000409727 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.35■□□□□ 0.05
CHMP3-204ENST00000409727 HCLS1P14317 486 aaPredicted RBP15.35■□□□□ 0.05
CHMP3-204ENST00000409727 PARP10Q53GL7 1025 aa15.35■□□□□ 0.05
CHMP3-204ENST00000409727 ERC1Q8IUD2 1116 aa15.35■□□□□ 0.05
CHMP3-204ENST00000409727 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.35■□□□□ 0.05
CHMP3-204ENST00000409727 SH3TC1Q8TE82 1336 aa15.34■□□□□ 0.05
CHMP3-204ENST00000409727 SASH1O94885 1247 aa15.34■□□□□ 0.05
CHMP3-204ENST00000409727 MX1P20591 662 aa15.34■□□□□ 0.05
CHMP3-204ENST00000409727 PDE1AP54750 535 aa15.34■□□□□ 0.05
CHMP3-204ENST00000409727 CCDC57Q2TAC2 916 aa15.34■□□□□ 0.05
CHMP3-204ENST00000409727 COPRSQ9NQ92 184 aa15.34■□□□□ 0.05
CHMP3-204ENST00000409727 SCN7AQ01118 1682 aa15.34■□□□□ 0.05
CHMP3-204ENST00000409727 GSPT1P15170 499 aaKnown RBP15.33■□□□□ 0.05
CHMP3-204ENST00000409727 CTSWP56202 376 aa15.33■□□□□ 0.05
CHMP3-204ENST00000409727 BMP2KLQ5H9B9 411 aa15.33■□□□□ 0.05
CHMP3-204ENST00000409727 TTC22Q5TAA0 569 aa15.33■□□□□ 0.05
CHMP3-204ENST00000409727 CLASRPQ8N2M8 674 aaKnown RBP15.33■□□□□ 0.05
CHMP3-204ENST00000409727 PLA2G12BQ9BX93 195 aa15.33■□□□□ 0.05
CHMP3-204ENST00000409727 PDE8AO60658 829 aa15.33■□□□□ 0.04
CHMP3-204ENST00000409727 NTSR2O95665 410 aa15.33■□□□□ 0.04
CHMP3-204ENST00000409727 PLSCR1O15162 318 aa15.32■□□□□ 0.04
CHMP3-204ENST00000409727 IFIT5Q13325 482 aaKnown RBP15.32■□□□□ 0.04
CHMP3-204ENST00000409727 TAF7LQ5H9L4 462 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms