RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 COG6Q9Y2V7 657 aa25.85■■□□□ 1.73
VSX1-203ENST00000409285 UTYO14607 1347 aa25.84■■□□□ 1.73
VSX1-203ENST00000409285 MSH5O43196 834 aa25.84■■□□□ 1.73
VSX1-203ENST00000409285 SRCAPQ6ZRS2 3230 aa25.84■■□□□ 1.73
VSX1-203ENST00000409285 SETDB2Q96T68 719 aa25.83■■□□□ 1.73
VSX1-203ENST00000409285 PDGFDQ9GZP0 370 aaPredicted RBP25.83■■□□□ 1.73
VSX1-203ENST00000409285 CHMP4BQ9H444 224 aaKnown RBP25.83■■□□□ 1.73
VSX1-203ENST00000409285 GPTP24298 496 aa25.82■■□□□ 1.72
VSX1-203ENST00000409285 TM4SF1P30408 202 aa25.82■■□□□ 1.72
VSX1-203ENST00000409285 NFIXQ14938 502 aa25.82■■□□□ 1.72
VSX1-203ENST00000409285 USP44Q9H0E7 712 aa25.82■■□□□ 1.72
VSX1-203ENST00000409285 GRM8O00222 908 aa25.81■■□□□ 1.72
VSX1-203ENST00000409285 ZBTB7BO15156 539 aaPredicted RBP25.81■■□□□ 1.72
VSX1-203ENST00000409285 CRBNQ96SW2 442 aa25.8■■□□□ 1.72
VSX1-203ENST00000409285 KIF13BQ9NQT8 1826 aa25.8■■□□□ 1.72
VSX1-203ENST00000409285 ANKRD31Q8N7Z5 1873 aa25.8■■□□□ 1.72
VSX1-203ENST00000409285 AAMPQ13685 434 aa25.79■■□□□ 1.72
VSX1-203ENST00000409285 PPP1R42Q7Z4L9 355 aa25.79■■□□□ 1.72
VSX1-203ENST00000409285 RIC1Q4ADV7 1423 aa25.79■■□□□ 1.72
VSX1-203ENST00000409285 NTSR2O95665 410 aa25.79■■□□□ 1.72
VSX1-203ENST00000409285 PCCAP05165 728 aaPredicted RBP25.79■■□□□ 1.72
VSX1-203ENST00000409285 SUSD4Q5VX71 490 aa25.79■■□□□ 1.72
VSX1-203ENST00000409285 ZBTB38Q8NAP3 1195 aaPredicted RBP25.79■■□□□ 1.72
VSX1-203ENST00000409285 LRP5O75197 1615 aa25.78■■□□□ 1.72
VSX1-203ENST00000409285 CDHR2Q9BYE9 1310 aa25.78■■□□□ 1.72
VSX1-203ENST00000409285 H7C1W4 665 aa25.78■■□□□ 1.72
VSX1-203ENST00000409285 NEFLP07196 543 aa25.78■■□□□ 1.72
VSX1-203ENST00000409285 GNAI3P08754 354 aa25.78■■□□□ 1.72
VSX1-203ENST00000409285 MEIS3Q99687 375 aa25.78■■□□□ 1.72
VSX1-203ENST00000409285 NYXQ9GZU5 481 aa25.78■■□□□ 1.72
VSX1-203ENST00000409285 C9orf78Q9NZ63 289 aaPredicted RBP25.78■■□□□ 1.72
VSX1-203ENST00000409285 CASP7P55210 303 aa25.77■■□□□ 1.72
VSX1-203ENST00000409285 UTP14AQ9BVJ6 771 aaKnown RBP25.77■■□□□ 1.72
VSX1-203ENST00000409285 TNRC6CQ9HCJ0 1690 aaKnown RBP25.76■■□□□ 1.71
VSX1-203ENST00000409285 POLRMTO00411 1230 aaKnown RBP25.76■■□□□ 1.71
VSX1-203ENST00000409285 NBPF7P0C2Y1 421 aaPredicted RBP25.76■■□□□ 1.71
VSX1-203ENST00000409285 DDR1Q08345 913 aa25.76■■□□□ 1.71
VSX1-203ENST00000409285 BICDL1Q6ZP65 573 aa25.76■■□□□ 1.71
VSX1-203ENST00000409285 MTFR1LQ9H019 292 aa25.76■■□□□ 1.71
VSX1-203ENST00000409285 ZBTB40Q9NUA8 1239 aa25.76■■□□□ 1.71
VSX1-203ENST00000409285 SH3TC1Q8TE82 1336 aa25.75■■□□□ 1.71
VSX1-203ENST00000409285 ZBTB7AO95365 584 aa25.75■■□□□ 1.71
VSX1-203ENST00000409285 TRMT112Q9UI30 125 aaKnown RBP25.75■■□□□ 1.71
VSX1-203ENST00000409285 HDAC5Q9UQL6 1122 aa25.75■■□□□ 1.71
VSX1-203ENST00000409285 IRX6P78412 446 aaPredicted RBP25.74■■□□□ 1.71
VSX1-203ENST00000409285 UBE3BQ7Z3V4 1068 aa25.74■■□□□ 1.71
VSX1-203ENST00000409285 NBPF5PQ86XG9 351 aaPredicted RBP25.74■■□□□ 1.71
VSX1-203ENST00000409285 SPON1Q9HCB6 807 aa25.74■■□□□ 1.71
VSX1-203ENST00000409285 MMP10P09238 476 aa25.73■■□□□ 1.71
VSX1-203ENST00000409285 UBTFL1P0CB47 393 aaPredicted RBP25.73■■□□□ 1.71
VSX1-203ENST00000409285 TPTE2Q6XPS3 522 aa25.73■■□□□ 1.71
VSX1-203ENST00000409285 MSL1Q68DK7 614 aa25.72■■□□□ 1.71
VSX1-203ENST00000409285 EXOC6Q8TAG9 804 aa25.72■■□□□ 1.71
VSX1-203ENST00000409285 SERPINB2P05120 415 aa25.72■■□□□ 1.71
VSX1-203ENST00000409285 PLA2G12BQ9BX93 195 aa25.72■■□□□ 1.71
VSX1-203ENST00000409285 DLEC1Q9Y238 1755 aa25.71■■□□□ 1.71
VSX1-203ENST00000409285 HSP90B1P14625 803 aaKnown RBP25.71■■□□□ 1.71
VSX1-203ENST00000409285 ERICH6BQ5W0A0 696 aa25.71■■□□□ 1.71
VSX1-203ENST00000409285 CNBD1Q8NA66 436 aa25.71■■□□□ 1.71
VSX1-203ENST00000409285 FAM89AQ96GI7 184 aa25.71■■□□□ 1.71
VSX1-203ENST00000409285 ATF5Q9Y2D1 282 aaPredicted RBP25.71■■□□□ 1.71
VSX1-203ENST00000409285 PARP3Q9Y6F1 533 aa25.71■■□□□ 1.71
VSX1-203ENST00000409285 GNAI2P04899 355 aa25.7■■□□□ 1.7
VSX1-203ENST00000409285 SLC10A5Q5PT55 438 aa25.7■■□□□ 1.7
VSX1-203ENST00000409285 ABCC12Q96J65 1359 aa25.7■■□□□ 1.7
VSX1-203ENST00000409285 PRR5LQ6MZQ0 368 aa25.69■■□□□ 1.7
VSX1-203ENST00000409285 COL11A2P13942 1736 aaPredicted RBP25.68■■□□□ 1.7
VSX1-203ENST00000409285 KAZALD1Q96I82 304 aa25.68■■□□□ 1.7
VSX1-203ENST00000409285 IRS4O14654 1257 aaPredicted RBP25.67■■□□□ 1.7
VSX1-203ENST00000409285 NUTM1Q86Y26 1132 aa25.67■■□□□ 1.7
VSX1-203ENST00000409285 SUCLG2Q96I99 432 aa25.67■■□□□ 1.7
VSX1-203ENST00000409285 LRRFIP2Q9Y608 721 aaKnown RBP25.67■■□□□ 1.7
VSX1-203ENST00000409285 FAM177BA6PVY3 158 aa25.66■■□□□ 1.7
VSX1-203ENST00000409285 ERFEQ4G0M1 354 aa25.66■■□□□ 1.7
VSX1-203ENST00000409285 SYNE4Q8N205 404 aa25.66■■□□□ 1.7
VSX1-203ENST00000409285 SGIP1Q9BQI5 828 aa25.66■■□□□ 1.7
VSX1-203ENST00000409285 KIAA1551Q9HCM1 1747 aa25.66■■□□□ 1.7
VSX1-203ENST00000409285 ST5P78524 1137 aa25.66■■□□□ 1.7
VSX1-203ENST00000409285 RABL6Q3YEC7 729 aaPredicted RBP25.66■■□□□ 1.7
VSX1-203ENST00000409285 C10orf71Q711Q0 1435 aa25.65■■□□□ 1.7
VSX1-203ENST00000409285 PDE8AO60658 829 aa25.65■■□□□ 1.7
VSX1-203ENST00000409285 GTF2E1P29083 439 aaPredicted RBP25.65■■□□□ 1.7
VSX1-203ENST00000409285 MTX1Q13505 466 aa25.65■■□□□ 1.7
VSX1-203ENST00000409285 RTL5Q5HYW3 569 aaPredicted RBP25.65■■□□□ 1.7
VSX1-203ENST00000409285 JARID2Q92833 1246 aaPredicted RBP25.65■■□□□ 1.7
VSX1-203ENST00000409285 SPEF2Q9C093 1822 aa25.64■■□□□ 1.7
VSX1-203ENST00000409285 PTGER2P43116 358 aa25.64■■□□□ 1.69
VSX1-203ENST00000409285 FOXO4P98177 505 aa25.64■■□□□ 1.69
VSX1-203ENST00000409285 BICC1Q9H694 974 aaKnown RBP25.64■■□□□ 1.69
VSX1-203ENST00000409285 POLD1P28340 1107 aa25.63■■□□□ 1.69
VSX1-203ENST00000409285 TAF1P21675 1872 aa25.63■■□□□ 1.69
VSX1-203ENST00000409285 RTL9Q8NET4 1388 aa25.63■■□□□ 1.69
VSX1-203ENST00000409285 BRCA1P38398 1863 aaKnown RBP25.62■■□□□ 1.69
VSX1-203ENST00000409285 NPHP1O15259 732 aa25.62■■□□□ 1.69
VSX1-203ENST00000409285 CTSWP56202 376 aa25.62■■□□□ 1.69
VSX1-203ENST00000409285 EPHA10Q5JZY3 1008 aa25.62■■□□□ 1.69
VSX1-203ENST00000409285 ANKRD44Q8N8A2 993 aa25.62■■□□□ 1.69
VSX1-203ENST00000409285 C1orf115Q9H7X2 142 aa25.62■■□□□ 1.69
VSX1-203ENST00000409285 CSF1RP07333 972 aa25.61■■□□□ 1.69
VSX1-203ENST00000409285 RPAP2Q8IXW5 612 aaPredicted RBP25.61■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms