RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 ITPRIPQ8IWB1 547 aa16.17■□□□□ 0.18
SMARCB1-203ENST00000407082 TTC5Q8N0Z6 440 aa16.17■□□□□ 0.18
SMARCB1-203ENST00000407082 UPF2Q9HAU5 1272 aaKnown RBP16.17■□□□□ 0.18
SMARCB1-203ENST00000407082 NARFQ9UHQ1 456 aa16.17■□□□□ 0.18
SMARCB1-203ENST00000407082 DDNO94850 711 aaPredicted RBP16.16■□□□□ 0.18
SMARCB1-203ENST00000407082 RLBP1P12271 317 aa16.16■□□□□ 0.18
SMARCB1-203ENST00000407082 TRIM27P14373 513 aa16.16■□□□□ 0.18
SMARCB1-203ENST00000407082 LBX1P52954 281 aa16.16■□□□□ 0.18
SMARCB1-203ENST00000407082 C8orf34Q49A92 452 aa16.16■□□□□ 0.18
SMARCB1-203ENST00000407082 API5Q9BZZ5 524 aaKnown RBP16.16■□□□□ 0.18
SMARCB1-203ENST00000407082 TSPYL4Q9UJ04 414 aa16.16■□□□□ 0.18
SMARCB1-203ENST00000407082 SOS1Q07889 1333 aaPredicted RBP16.16■□□□□ 0.18
SMARCB1-203ENST00000407082 KCNQ3O43525 872 aa16.15■□□□□ 0.18
SMARCB1-203ENST00000407082 TIAM2Q8IVF5 1701 aa16.15■□□□□ 0.18
SMARCB1-203ENST00000407082 CCDC24Q8N4L8 307 aa16.15■□□□□ 0.18
SMARCB1-203ENST00000407082 BABAM1Q9NWV8 329 aa16.15■□□□□ 0.18
SMARCB1-203ENST00000407082 SIPA1L3O60292 1781 aaPredicted RBP16.15■□□□□ 0.18
SMARCB1-203ENST00000407082 CHL1O00533 1208 aa16.14■□□□□ 0.17
SMARCB1-203ENST00000407082 EIF5BO60841 1220 aaKnown RBP16.14■□□□□ 0.17
SMARCB1-203ENST00000407082 VAMP4O75379 141 aa16.14■□□□□ 0.17
SMARCB1-203ENST00000407082 VEGFBP49765 207 aa16.14■□□□□ 0.17
SMARCB1-203ENST00000407082 RTL5Q5HYW3 569 aaPredicted RBP16.14■□□□□ 0.17
SMARCB1-203ENST00000407082 PCDHB15Q9Y5E8 787 aa16.14■□□□□ 0.17
SMARCB1-203ENST00000407082 CNTNAP1P78357 1384 aa16.13■□□□□ 0.17
SMARCB1-203ENST00000407082 CYP19A1P11511 503 aaPredicted RBP16.13■□□□□ 0.17
SMARCB1-203ENST00000407082 ZNF496Q96IT1 587 aaPredicted RBP16.13■□□□□ 0.17
SMARCB1-203ENST00000407082 PDZRN3Q9UPQ7 1066 aa16.13■□□□□ 0.17
SMARCB1-203ENST00000407082 CLEC11AQ9Y240 323 aa16.13■□□□□ 0.17
SMARCB1-203ENST00000407082 COL15A1P39059 1388 aa16.13■□□□□ 0.17
SMARCB1-203ENST00000407082 AFDNP55196 1824 aaKnown RBP16.12■□□□□ 0.17
SMARCB1-203ENST00000407082 NPHP1O15259 732 aa16.12■□□□□ 0.17
SMARCB1-203ENST00000407082 TWISTNBQ3B726 338 aaPredicted RBP16.12■□□□□ 0.17
SMARCB1-203ENST00000407082 EAPPQ56P03 285 aaPredicted RBP16.12■□□□□ 0.17
SMARCB1-203ENST00000407082 MRPL50Q8N5N7 158 aaKnown RBP16.12■□□□□ 0.17
SMARCB1-203ENST00000407082 FMNL2Q96PY5 1086 aa16.12■□□□□ 0.17
SMARCB1-203ENST00000407082 BCL2L12Q9HB09 334 aa16.12■□□□□ 0.17
SMARCB1-203ENST00000407082 ZBTB1Q9Y2K1 713 aa16.12■□□□□ 0.17
SMARCB1-203ENST00000407082 CARMIL3Q8ND23 1372 aa16.12■□□□□ 0.17
SMARCB1-203ENST00000407082 TJP1Q07157 1748 aa16.11■□□□□ 0.17
SMARCB1-203ENST00000407082 TMEM88BA6NKF7 163 aa16.11■□□□□ 0.17
SMARCB1-203ENST00000407082 ABHD8Q96I13 439 aa16.11■□□□□ 0.17
SMARCB1-203ENST00000407082 TAOK3Q9H2K8 898 aa16.11■□□□□ 0.17
SMARCB1-203ENST00000407082 MBIPQ9NS73 344 aa16.11■□□□□ 0.17
SMARCB1-203ENST00000407082 ZBTB40Q9NUA8 1239 aa16.11■□□□□ 0.17
SMARCB1-203ENST00000407082 PDE6BP35913 854 aa16.1■□□□□ 0.17
SMARCB1-203ENST00000407082 EIF4A1P60842 406 aaKnown RBP16.1■□□□□ 0.17
SMARCB1-203ENST00000407082 LDHDQ86WU2 507 aa16.1■□□□□ 0.17
SMARCB1-203ENST00000407082 TMEM57Q8N5G2 664 aa16.1■□□□□ 0.17
SMARCB1-203ENST00000407082 WBP1LQ9NX94 342 aa16.1■□□□□ 0.17
SMARCB1-203ENST00000407082 ZNF330Q9Y3S2 320 aaPredicted RBP16.1■□□□□ 0.17
SMARCB1-203ENST00000407082 IQCA1LA6NCM1 817 aa16.09■□□□□ 0.17
SMARCB1-203ENST00000407082 CCDC85CA6NKD9 419 aa16.09■□□□□ 0.17
SMARCB1-203ENST00000407082 BECN1Q14457 450 aa16.09■□□□□ 0.17
SMARCB1-203ENST00000407082 VSIG10Q8N0Z9 540 aa16.09■□□□□ 0.17
SMARCB1-203ENST00000407082 GCC1Q96CN9 775 aa16.09■□□□□ 0.17
SMARCB1-203ENST00000407082 SNRPA1P09661 255 aaKnown RBP16.08■□□□□ 0.16
SMARCB1-203ENST00000407082 TBC1D9BQ66K14 1250 aa16.08■□□□□ 0.16
SMARCB1-203ENST00000407082 SMC5Q8IY18 1101 aa16.08■□□□□ 0.16
SMARCB1-203ENST00000407082 BRIP1Q9BX63 1249 aa16.08■□□□□ 0.16
SMARCB1-203ENST00000407082 TAF1DQ9H5J8 278 aaPredicted RBP16.08■□□□□ 0.16
SMARCB1-203ENST00000407082 TNNQ9UQP3 1299 aa16.08■□□□□ 0.16
SMARCB1-203ENST00000407082 PASKQ96RG2 1323 aa16.08■□□□□ 0.16
SMARCB1-203ENST00000407082 HEG1Q9ULI3 1381 aa16.08■□□□□ 0.16
SMARCB1-203ENST00000407082 DEFB115Q30KQ5 88 aa16.07■□□□□ 0.16
SMARCB1-203ENST00000407082 TEX13AQ9BXU3 409 aaPredicted RBP16.07■□□□□ 0.16
SMARCB1-203ENST00000407082 CHMP4AQ9BY43 222 aa16.07■□□□□ 0.16
SMARCB1-203ENST00000407082 KDM3BQ7LBC6 1761 aa16.07■□□□□ 0.16
SMARCB1-203ENST00000407082 DLEC1Q9Y238 1755 aa16.07■□□□□ 0.16
SMARCB1-203ENST00000407082 UBR2Q8IWV8 1755 aa16.06■□□□□ 0.16
SMARCB1-203ENST00000407082 A0A087WZG4 1122 aa16.06■□□□□ 0.16
SMARCB1-203ENST00000407082 HSPA8P11142 646 aaKnown RBP16.06■□□□□ 0.16
SMARCB1-203ENST00000407082 MLLT1Q03111 559 aaPredicted RBP16.06■□□□□ 0.16
SMARCB1-203ENST00000407082 CNKSR1Q969H4 720 aa16.06■□□□□ 0.16
SMARCB1-203ENST00000407082 ABT1Q9ULW3 272 aaKnown RBP16.06■□□□□ 0.16
SMARCB1-203ENST00000407082 TBC1D2BQ9UPU7 963 aa16.06■□□□□ 0.16
SMARCB1-203ENST00000407082 PTPRCP08575 1304 aa16.05■□□□□ 0.16
SMARCB1-203ENST00000407082 PRAMEF22A3QJZ6 481 aa16.05■□□□□ 0.16
SMARCB1-203ENST00000407082 STARD3NLO95772 234 aa16.05■□□□□ 0.16
SMARCB1-203ENST00000407082 ITGBL1O95965 494 aaPredicted RBP16.05■□□□□ 0.16
SMARCB1-203ENST00000407082 GRM1Q13255 1194 aa16.05■□□□□ 0.16
SMARCB1-203ENST00000407082 KRT24Q2M2I5 525 aa16.05■□□□□ 0.16
SMARCB1-203ENST00000407082 PRR5LQ6MZQ0 368 aa16.05■□□□□ 0.16
SMARCB1-203ENST00000407082 SKAP1Q86WV1 359 aa16.05■□□□□ 0.16
SMARCB1-203ENST00000407082 USP16Q9Y5T5 823 aa16.05■□□□□ 0.16
SMARCB1-203ENST00000407082 NRXN2Q9P2S2 1712 aa16.05■□□□□ 0.16
SMARCB1-203ENST00000407082 ABCC4O15439 1325 aa16.04■□□□□ 0.16
SMARCB1-203ENST00000407082 LTBP3Q9NS15 1303 aa16.04■□□□□ 0.16
SMARCB1-203ENST00000407082 MAP2K1Q02750 393 aaPredicted RBP16.04■□□□□ 0.16
SMARCB1-203ENST00000407082 PRPF40BQ6NWY9 871 aaKnown RBP16.04■□□□□ 0.16
SMARCB1-203ENST00000407082 PAXIP1Q6ZW49 1069 aaPredicted RBP16.04■□□□□ 0.16
SMARCB1-203ENST00000407082 DICER1Q9UPY3 1922 aaKnown RBP16.04■□□□□ 0.16
SMARCB1-203ENST00000407082 ELL2O00472 640 aaPredicted RBP16.03■□□□□ 0.16
SMARCB1-203ENST00000407082 ZBTB7BO15156 539 aaPredicted RBP16.03■□□□□ 0.16
SMARCB1-203ENST00000407082 SOGA3Q5TF21 947 aa16.03■□□□□ 0.16
SMARCB1-203ENST00000407082 MAP1SQ66K74 1059 aaPredicted RBP16.03■□□□□ 0.16
SMARCB1-203ENST00000407082 C8orf58Q8NAV2 365 aa16.03■□□□□ 0.16
SMARCB1-203ENST00000407082 SETDB2Q96T68 719 aa16.03■□□□□ 0.16
SMARCB1-203ENST00000407082 HACL1Q9UJ83 578 aa16.03■□□□□ 0.16
SMARCB1-203ENST00000407082 WDR33Q9C0J8 1336 aaKnown RBP16.02■□□□□ 0.16
SMARCB1-203ENST00000407082 EIF2S2P20042 333 aaKnown RBP16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms