RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 COG6Q9Y2V7 657 aa15.55■□□□□ 0.08
LINC00339-201ENST00000404210 BICDL1Q6ZP65 573 aa15.54■□□□□ 0.08
LINC00339-201ENST00000404210 ITPRIPQ8IWB1 547 aa15.54■□□□□ 0.08
LINC00339-201ENST00000404210 PDGFDQ9GZP0 370 aaPredicted RBP15.54■□□□□ 0.08
LINC00339-201ENST00000404210 USP44Q9H0E7 712 aa15.54■□□□□ 0.08
LINC00339-201ENST00000404210 DDX19BQ9UMR2 479 aa15.54■□□□□ 0.08
LINC00339-201ENST00000404210 N4BP2Q86UW6 1770 aaPredicted RBP15.54■□□□□ 0.08
LINC00339-201ENST00000404210 UBN2Q6ZU65 1347 aa15.53■□□□□ 0.08
LINC00339-201ENST00000404210 AFDNP55196 1824 aaKnown RBP15.53■□□□□ 0.08
LINC00339-201ENST00000404210 H7C1W4 665 aa15.53■□□□□ 0.08
LINC00339-201ENST00000404210 ZBTB7BO15156 539 aaPredicted RBP15.53■□□□□ 0.08
LINC00339-201ENST00000404210 SUSD4Q5VX71 490 aa15.53■□□□□ 0.08
LINC00339-201ENST00000404210 UTP14AQ9BVJ6 771 aaKnown RBP15.53■□□□□ 0.08
LINC00339-201ENST00000404210 UTYO14607 1347 aa15.52■□□□□ 0.08
LINC00339-201ENST00000404210 PCCAP05165 728 aaPredicted RBP15.52■□□□□ 0.08
LINC00339-201ENST00000404210 TPTE2Q6XPS3 522 aa15.52■□□□□ 0.08
LINC00339-201ENST00000404210 ZBTB38Q8NAP3 1195 aaPredicted RBP15.52■□□□□ 0.08
LINC00339-201ENST00000404210 NYXQ9GZU5 481 aa15.52■□□□□ 0.08
LINC00339-201ENST00000404210 C9orf78Q9NZ63 289 aaPredicted RBP15.52■□□□□ 0.08
LINC00339-201ENST00000404210 TRMT112Q9UI30 125 aaKnown RBP15.52■□□□□ 0.08
LINC00339-201ENST00000404210 HDAC5Q9UQL6 1122 aa15.52■□□□□ 0.08
LINC00339-201ENST00000404210 PSDA5PKW4 1024 aaPredicted RBP15.51■□□□□ 0.07
LINC00339-201ENST00000404210 GRM8O00222 908 aa15.51■□□□□ 0.07
LINC00339-201ENST00000404210 SERPINB2P05120 415 aa15.51■□□□□ 0.07
LINC00339-201ENST00000404210 GNAI3P08754 354 aa15.51■□□□□ 0.07
LINC00339-201ENST00000404210 CACNB1Q02641 598 aaPredicted RBP15.51■□□□□ 0.07
LINC00339-201ENST00000404210 CRBNQ96SW2 442 aa15.51■□□□□ 0.07
LINC00339-201ENST00000404210 MTFR1LQ9H019 292 aa15.51■□□□□ 0.07
LINC00339-201ENST00000404210 CASZ1Q86V15 1759 aa15.51■□□□□ 0.07
LINC00339-201ENST00000404210 CARMIL3Q8ND23 1372 aa15.5■□□□□ 0.07
LINC00339-201ENST00000404210 POLRMTO00411 1230 aaKnown RBP15.5■□□□□ 0.07
LINC00339-201ENST00000404210 HOXD11P31277 338 aaPredicted RBP15.5■□□□□ 0.07
LINC00339-201ENST00000404210 AAMPQ13685 434 aa15.5■□□□□ 0.07
LINC00339-201ENST00000404210 NBPF5PQ86XG9 351 aaPredicted RBP15.5■□□□□ 0.07
LINC00339-201ENST00000404210 PARP3Q9Y6F1 533 aa15.5■□□□□ 0.07
LINC00339-201ENST00000404210 CDHR2Q9BYE9 1310 aa15.49■□□□□ 0.07
LINC00339-201ENST00000404210 FAM177BA6PVY3 158 aa15.49■□□□□ 0.07
LINC00339-201ENST00000404210 NTSR2O95665 410 aa15.49■□□□□ 0.07
LINC00339-201ENST00000404210 NEFLP07196 543 aa15.49■□□□□ 0.07
LINC00339-201ENST00000404210 MMP10P09238 476 aa15.49■□□□□ 0.07
LINC00339-201ENST00000404210 NBPF7P0C2Y1 421 aaPredicted RBP15.49■□□□□ 0.07
LINC00339-201ENST00000404210 CASP7P55210 303 aa15.49■□□□□ 0.07
LINC00339-201ENST00000404210 DDR1Q08345 913 aa15.49■□□□□ 0.07
LINC00339-201ENST00000404210 SLC10A5Q5PT55 438 aa15.49■□□□□ 0.07
LINC00339-201ENST00000404210 MSL1Q68DK7 614 aa15.49■□□□□ 0.07
LINC00339-201ENST00000404210 MEIS3Q99687 375 aa15.49■□□□□ 0.07
LINC00339-201ENST00000404210 SH3TC1Q8TE82 1336 aa15.48■□□□□ 0.07
LINC00339-201ENST00000404210 ZBTB7AO95365 584 aa15.48■□□□□ 0.07
LINC00339-201ENST00000404210 UBTFL1P0CB47 393 aaPredicted RBP15.48■□□□□ 0.07
LINC00339-201ENST00000404210 HSP90B1P14625 803 aaKnown RBP15.48■□□□□ 0.07
LINC00339-201ENST00000404210 GTF2E1P29083 439 aaPredicted RBP15.48■□□□□ 0.07
LINC00339-201ENST00000404210 IRX6P78412 446 aaPredicted RBP15.48■□□□□ 0.07
LINC00339-201ENST00000404210 CNKSR2Q8WXI2 1034 aa15.48■□□□□ 0.07
LINC00339-201ENST00000404210 FAM89AQ96GI7 184 aa15.48■□□□□ 0.07
LINC00339-201ENST00000404210 ZBTB40Q9NUA8 1239 aa15.48■□□□□ 0.07
LINC00339-201ENST00000404210 COL24A1Q17RW2 1714 aa15.48■□□□□ 0.07
LINC00339-201ENST00000404210 UBE3BQ7Z3V4 1068 aa15.47■□□□□ 0.07
LINC00339-201ENST00000404210 EXOC6Q8TAG9 804 aa15.47■□□□□ 0.07
LINC00339-201ENST00000404210 JARID2Q92833 1246 aaPredicted RBP15.47■□□□□ 0.07
LINC00339-201ENST00000404210 PLA2G12BQ9BX93 195 aa15.47■□□□□ 0.07
LINC00339-201ENST00000404210 ATF5Q9Y2D1 282 aaPredicted RBP15.47■□□□□ 0.07
LINC00339-201ENST00000404210 IRS4O14654 1257 aaPredicted RBP15.46■□□□□ 0.07
LINC00339-201ENST00000404210 GNAI2P04899 355 aa15.46■□□□□ 0.07
LINC00339-201ENST00000404210 POLD1P28340 1107 aa15.46■□□□□ 0.07
LINC00339-201ENST00000404210 ERFEQ4G0M1 354 aa15.46■□□□□ 0.07
LINC00339-201ENST00000404210 PRR5LQ6MZQ0 368 aa15.46■□□□□ 0.07
LINC00339-201ENST00000404210 NUTM1Q86Y26 1132 aa15.46■□□□□ 0.07
LINC00339-201ENST00000404210 SYNE4Q8N205 404 aa15.46■□□□□ 0.07
LINC00339-201ENST00000404210 CNBD1Q8NA66 436 aa15.46■□□□□ 0.07
LINC00339-201ENST00000404210 NPHP1O15259 732 aa15.45■□□□□ 0.06
LINC00339-201ENST00000404210 PDE8AO60658 829 aa15.45■□□□□ 0.06
LINC00339-201ENST00000404210 ST5P78524 1137 aa15.45■□□□□ 0.06
LINC00339-201ENST00000404210 RTL5Q5HYW3 569 aaPredicted RBP15.45■□□□□ 0.06
LINC00339-201ENST00000404210 ERICH6BQ5W0A0 696 aa15.45■□□□□ 0.06
LINC00339-201ENST00000404210 SUCLG2Q96I99 432 aa15.45■□□□□ 0.06
LINC00339-201ENST00000404210 NRXN2Q9P2S2 1712 aa15.45■□□□□ 0.06
LINC00339-201ENST00000404210 KAZALD1Q96I82 304 aa15.44■□□□□ 0.06
LINC00339-201ENST00000404210 SGIP1Q9BQI5 828 aa15.44■□□□□ 0.06
LINC00339-201ENST00000404210 CSF1RP07333 972 aa15.43■□□□□ 0.06
LINC00339-201ENST00000404210 HCLS1P14317 486 aaPredicted RBP15.43■□□□□ 0.06
LINC00339-201ENST00000404210 FOXO4P98177 505 aa15.43■□□□□ 0.06
LINC00339-201ENST00000404210 NLRP3Q96P20 1036 aa15.43■□□□□ 0.06
LINC00339-201ENST00000404210 BRIP1Q9BX63 1249 aa15.43■□□□□ 0.06
LINC00339-201ENST00000404210 SPON1Q9HCB6 807 aa15.43■□□□□ 0.06
LINC00339-201ENST00000404210 LRRFIP2Q9Y608 721 aaKnown RBP15.43■□□□□ 0.06
LINC00339-201ENST00000404210 PTGER2P43116 358 aa15.42■□□□□ 0.06
LINC00339-201ENST00000404210 ATP8B2P98198 1209 aa15.42■□□□□ 0.06
LINC00339-201ENST00000404210 SF3B3Q15393 1217 aaKnown RBP15.42■□□□□ 0.06
LINC00339-201ENST00000404210 RABL6Q3YEC7 729 aaPredicted RBP15.42■□□□□ 0.06
LINC00339-201ENST00000404210 RPAP2Q8IXW5 612 aaPredicted RBP15.42■□□□□ 0.06
LINC00339-201ENST00000404210 RIC1Q4ADV7 1423 aa15.42■□□□□ 0.06
LINC00339-201ENST00000404210 KLRG2A4D1S0 409 aaPredicted RBP15.41■□□□□ 0.06
LINC00339-201ENST00000404210 EPHA10Q5JZY3 1008 aa15.41■□□□□ 0.06
LINC00339-201ENST00000404210 CCDC24Q8N4L8 307 aa15.41■□□□□ 0.06
LINC00339-201ENST00000404210 TTLL11Q8NHH1 800 aa15.41■□□□□ 0.06
LINC00339-201ENST00000404210 BICC1Q9H694 974 aaKnown RBP15.41■□□□□ 0.06
LINC00339-201ENST00000404210 PDZRN3Q9UPQ7 1066 aa15.41■□□□□ 0.06
LINC00339-201ENST00000404210 DDX60Q8IY21 1712 aaKnown RBP15.4■□□□□ 0.06
LINC00339-201ENST00000404210 PDE6BP35913 854 aa15.4■□□□□ 0.06
LINC00339-201ENST00000404210 MTX1Q13505 466 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms