RNA–Protein interactions for RNA: ENST00000398743.6

PRAME-202, Transcript of preferentially expressed antigen in melanoma, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PRAME, Length 2,196 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAME-202ENST00000398743 CCDC171Q6TFL3 1326 aa16.68■□□□□ 0.26
PRAME-202ENST00000398743 ATP5J2-PTCD1G3V325 749 aa16.68■□□□□ 0.26
PRAME-202ENST00000398743 PTCD1O75127 700 aaKnown RBP16.68■□□□□ 0.26
PRAME-202ENST00000398743 CASTP20810 708 aaKnown RBP16.68■□□□□ 0.26
PRAME-202ENST00000398743 AK2P54819 239 aa16.68■□□□□ 0.26
PRAME-202ENST00000398743 CAVIN1Q6NZI2 390 aaKnown RBP16.68■□□□□ 0.26
PRAME-202ENST00000398743 BOLA2Q9H3K6 86 aa16.68■□□□□ 0.26
PRAME-202ENST00000398743 RFX5P48382 616 aaPredicted RBP16.67■□□□□ 0.26
PRAME-202ENST00000398743 PTPN12Q05209 780 aaKnown RBP16.67■□□□□ 0.26
PRAME-202ENST00000398743 JARID2Q92833 1246 aaPredicted RBP16.67■□□□□ 0.26
PRAME-202ENST00000398743 LIMCH1Q9UPQ0 1083 aa16.67■□□□□ 0.26
PRAME-202ENST00000398743 IL2RBP14784 551 aa16.67■□□□□ 0.26
PRAME-202ENST00000398743 NMIQ13287 307 aaPredicted RBP16.67■□□□□ 0.26
PRAME-202ENST00000398743 PRPF40BQ6NWY9 871 aaKnown RBP16.67■□□□□ 0.26
PRAME-202ENST00000398743 KCNB2Q92953 911 aa16.67■□□□□ 0.26
PRAME-202ENST00000398743 FSD1Q9BTV5 496 aa16.67■□□□□ 0.26
PRAME-202ENST00000398743 AFDNP55196 1824 aaKnown RBP16.66■□□□□ 0.26
PRAME-202ENST00000398743 ZNF445P59923 1031 aa16.66■□□□□ 0.26
PRAME-202ENST00000398743 FAM227BQ96M60 508 aa16.66■□□□□ 0.26
PRAME-202ENST00000398743 TM6SF1Q9BZW5 370 aa16.66■□□□□ 0.26
PRAME-202ENST00000398743 SNRKQ9NRH2 765 aa16.66■□□□□ 0.26
PRAME-202ENST00000398743 WDR33Q9C0J8 1336 aaKnown RBP16.66■□□□□ 0.26
PRAME-202ENST00000398743 NBPF26B4DH59 902 aa16.65■□□□□ 0.26
PRAME-202ENST00000398743 ZKSCAN1P17029 563 aaPredicted RBP16.65■□□□□ 0.26
PRAME-202ENST00000398743 CASP7P55210 303 aa16.65■□□□□ 0.26
PRAME-202ENST00000398743 NECTIN1Q15223 517 aa16.65■□□□□ 0.26
PRAME-202ENST00000398743 NKX1-1Q15270 411 aaPredicted RBP16.65■□□□□ 0.26
PRAME-202ENST00000398743 ZSCAN23Q3MJ62 389 aa16.65■□□□□ 0.26
PRAME-202ENST00000398743 NBPF14Q5TI25 921 aa16.65■□□□□ 0.26
PRAME-202ENST00000398743 NBPF10Q6P3W6 841 aaKnown RBP16.65■□□□□ 0.26
PRAME-202ENST00000398743 RUFY3Q7L099 469 aa16.65■□□□□ 0.26
PRAME-202ENST00000398743 NBPF15Q8N660 670 aa16.65■□□□□ 0.26
PRAME-202ENST00000398743 GPT2Q8TD30 523 aa16.65■□□□□ 0.26
PRAME-202ENST00000398743 CARD10Q9BWT7 1032 aa16.65■□□□□ 0.26
PRAME-202ENST00000398743 TNNI3KQ59H18 835 aa16.65■□□□□ 0.26
PRAME-202ENST00000398743 VPS53Q5VIR6 699 aa16.65■□□□□ 0.26
PRAME-202ENST00000398743 CHAMP1Q96JM3 812 aa16.65■□□□□ 0.26
PRAME-202ENST00000398743 JAKMIP1Q96N16 626 aaKnown RBP16.65■□□□□ 0.26
PRAME-202ENST00000398743 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.65■□□□□ 0.26
PRAME-202ENST00000398743 FPGT-TNNI3KV9GXZ4 949 aa16.65■□□□□ 0.26
PRAME-202ENST00000398743 KCNJ4P48050 445 aa16.64■□□□□ 0.25
PRAME-202ENST00000398743 MAP4K1Q92918 833 aa16.64■□□□□ 0.25
PRAME-202ENST00000398743 ZSWIM6Q9HCJ5 1215 aa16.64■□□□□ 0.25
PRAME-202ENST00000398743 RBM8AQ9Y5S9 174 aaKnown RBP16.64■□□□□ 0.25
PRAME-202ENST00000398743 KCPQ6ZWJ8 1503 aa16.64■□□□□ 0.25
PRAME-202ENST00000398743 UBR2Q8IWV8 1755 aa16.64■□□□□ 0.25
PRAME-202ENST00000398743 MBD3O95983 291 aa16.64■□□□□ 0.25
PRAME-202ENST00000398743 TFCP2Q12800 502 aa16.64■□□□□ 0.25
PRAME-202ENST00000398743 ADCK5Q3MIX3 580 aa16.64■□□□□ 0.25
PRAME-202ENST00000398743 PDRG1Q9NUG6 133 aa16.64■□□□□ 0.25
PRAME-202ENST00000398743 DBNLQ9UJU6 430 aaKnown RBP16.64■□□□□ 0.25
PRAME-202ENST00000398743 CYP46A1Q9Y6A2 500 aa16.64■□□□□ 0.25
PRAME-202ENST00000398743 A0A0D9SFI3 127 aa16.63■□□□□ 0.25
PRAME-202ENST00000398743 CPA1P15085 419 aa16.63■□□□□ 0.25
PRAME-202ENST00000398743 ATP5JP18859 108 aa16.63■□□□□ 0.25
PRAME-202ENST00000398743 CREB3L3Q68CJ9 461 aa16.63■□□□□ 0.25
PRAME-202ENST00000398743 DDX54Q8TDD1 881 aaKnown RBP16.62■□□□□ 0.25
PRAME-202ENST00000398743 CWC25Q9NXE8 425 aaPredicted RBP16.62■□□□□ 0.25
PRAME-202ENST00000398743 ZNF335Q9H4Z2 1342 aaPredicted RBP16.62■□□□□ 0.25
PRAME-202ENST00000398743 PAPPAQ13219 1627 aa16.62■□□□□ 0.25
PRAME-202ENST00000398743 RPAP1Q9BWH6 1393 aaPredicted RBP16.62■□□□□ 0.25
PRAME-202ENST00000398743 MED23Q9ULK4 1368 aa16.62■□□□□ 0.25
PRAME-202ENST00000398743 H7C1W4 665 aa16.62■□□□□ 0.25
PRAME-202ENST00000398743 LMBR1LQ6UX01 489 aa16.62■□□□□ 0.25
PRAME-202ENST00000398743 TTLL7Q6ZT98 887 aa16.62■□□□□ 0.25
PRAME-202ENST00000398743 STRN4Q9NRL3 753 aa16.62■□□□□ 0.25
PRAME-202ENST00000398743 NASPP49321 788 aaPredicted RBP16.61■□□□□ 0.25
PRAME-202ENST00000398743 RNF20Q5VTR2 975 aa16.61■□□□□ 0.25
PRAME-202ENST00000398743 ZSCAN31Q96LW9 406 aaPredicted RBP16.61■□□□□ 0.25
PRAME-202ENST00000398743 LARP6Q9BRS8 491 aaKnown RBP16.61■□□□□ 0.25
PRAME-202ENST00000398743 ABCA3Q99758 1704 aa16.61■□□□□ 0.25
PRAME-202ENST00000398743 STRCQ7RTU9 1775 aa16.61■□□□□ 0.25
PRAME-202ENST00000398743 A1BGP04217 495 aa16.61■□□□□ 0.25
PRAME-202ENST00000398743 EVA1CP58658 441 aa16.61■□□□□ 0.25
PRAME-202ENST00000398743 SH2B1Q9NRF2 756 aaPredicted RBP16.61■□□□□ 0.25
PRAME-202ENST00000398743 SMC3Q9UQE7 1217 aa16.61■□□□□ 0.25
PRAME-202ENST00000398743 CHMP3Q9Y3E7 222 aa16.61■□□□□ 0.25
PRAME-202ENST00000398743 TNS2Q63HR2 1409 aa16.61■□□□□ 0.25
PRAME-202ENST00000398743 SLC27A2O14975 620 aa16.6■□□□□ 0.25
PRAME-202ENST00000398743 PSMA5P28066 241 aa16.6■□□□□ 0.25
PRAME-202ENST00000398743 FOXO4P98177 505 aa16.6■□□□□ 0.25
PRAME-202ENST00000398743 RBM27Q9P2N5 1060 aaKnown RBP16.6■□□□□ 0.25
PRAME-202ENST00000398743 RFX7Q2KHR2 1363 aa16.6■□□□□ 0.25
PRAME-202ENST00000398743 JCADQ9P266 1359 aa16.6■□□□□ 0.25
PRAME-202ENST00000398743 NUP188Q5SRE5 1749 aa16.59■□□□□ 0.25
PRAME-202ENST00000398743 LARGE1O95461 756 aa16.59■□□□□ 0.25
PRAME-202ENST00000398743 CCDC191Q8NCU4 936 aa16.59■□□□□ 0.25
PRAME-202ENST00000398743 ANP32BQ92688 251 aaKnown RBP16.59■□□□□ 0.25
PRAME-202ENST00000398743 EDC3Q96F86 508 aaKnown RBP16.59■□□□□ 0.25
PRAME-202ENST00000398743 DBNDD2Q9BQY9 259 aa16.59■□□□□ 0.25
PRAME-202ENST00000398743 TMEM63CQ9P1W3 806 aa16.59■□□□□ 0.25
PRAME-202ENST00000398743 STX6O43752 255 aa16.58■□□□□ 0.25
PRAME-202ENST00000398743 ZSCAN22P10073 491 aaPredicted RBP16.58■□□□□ 0.25
PRAME-202ENST00000398743 ZNF589Q86UQ0 364 aaPredicted RBP16.58■□□□□ 0.25
PRAME-202ENST00000398743 ZBTB3Q9H5J0 574 aa16.58■□□□□ 0.25
PRAME-202ENST00000398743 RRAGDQ9NQL2 400 aaPredicted RBP16.58■□□□□ 0.25
PRAME-202ENST00000398743 NSFL1CQ9UNZ2 370 aaKnown RBP16.58■□□□□ 0.25
PRAME-202ENST00000398743 SHANK3Q9BYB0 1731 aa16.58■□□□□ 0.25
PRAME-202ENST00000398743 SYT1P21579 422 aa16.58■□□□□ 0.24
PRAME-202ENST00000398743 CCDC83Q8IWF9 413 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms