RNA–Protein interactions for RNA: ENST00000395859.2

VCPKMT-201, Transcript of valosin containing protein lysine methyltransferase, humanhuman

TSL 1 (best) BASIC

Gene VCPKMT, Length 795 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCPKMT-201ENST00000395859 HTTP42858 3142 aa18.65■□□□□ 0.58
VCPKMT-201ENST00000395859 HOXA10P31260 410 aaPredicted RBP18.65■□□□□ 0.58
VCPKMT-201ENST00000395859 HIRAP54198 1017 aaPredicted RBP18.65■□□□□ 0.58
VCPKMT-201ENST00000395859 GRIPAP1Q4V328 841 aa18.65■□□□□ 0.58
VCPKMT-201ENST00000395859 MORC1Q86VD1 984 aa18.65■□□□□ 0.58
VCPKMT-201ENST00000395859 LARGE2Q8N3Y3 721 aa18.65■□□□□ 0.58
VCPKMT-201ENST00000395859 ZC3H15Q8WU90 426 aaKnown RBP18.65■□□□□ 0.58
VCPKMT-201ENST00000395859 USP16Q9Y5T5 823 aa18.65■□□□□ 0.58
VCPKMT-201ENST00000395859 ABCC12Q96J65 1359 aa18.65■□□□□ 0.58
VCPKMT-201ENST00000395859 RIC1Q4ADV7 1423 aa18.65■□□□□ 0.58
VCPKMT-201ENST00000395859 KCNQ3O43525 872 aa18.64■□□□□ 0.57
VCPKMT-201ENST00000395859 PIP4K2AP48426 406 aaPredicted RBP18.64■□□□□ 0.57
VCPKMT-201ENST00000395859 NIP7Q9Y221 180 aaKnown RBP eCLIP18.64■□□□□ 0.57
VCPKMT-201ENST00000395859 ZNF652Q9Y2D9 606 aa18.64■□□□□ 0.57
VCPKMT-201ENST00000395859 CEMIPQ8WUJ3 1361 aa18.64■□□□□ 0.57
VCPKMT-201ENST00000395859 NPM2Q86SE8 214 aaKnown RBP18.63■□□□□ 0.57
VCPKMT-201ENST00000395859 NPC1L1Q9UHC9 1359 aa18.63■□□□□ 0.57
VCPKMT-201ENST00000395859 CXCL9Q07325 125 aa18.62■□□□□ 0.57
VCPKMT-201ENST00000395859 RNF186Q9NXI6 227 aa18.62■□□□□ 0.57
VCPKMT-201ENST00000395859 KIF7Q2M1P5 1343 aa18.62■□□□□ 0.57
VCPKMT-201ENST00000395859 CDHR2Q9BYE9 1310 aa18.61■□□□□ 0.57
VCPKMT-201ENST00000395859 PRAMEF22A3QJZ6 481 aa18.61■□□□□ 0.57
VCPKMT-201ENST00000395859 NBPF26B4DH59 902 aa18.61■□□□□ 0.57
VCPKMT-201ENST00000395859 HUNKP57058 714 aa18.61■□□□□ 0.57
VCPKMT-201ENST00000395859 TEFQ10587 303 aa18.61■□□□□ 0.57
VCPKMT-201ENST00000395859 NBPF10Q6P3W6 841 aaKnown RBP18.61■□□□□ 0.57
VCPKMT-201ENST00000395859 CDC37L1Q7L3B6 337 aa18.61■□□□□ 0.57
VCPKMT-201ENST00000395859 CTU1Q7Z7A3 348 aaKnown RBP18.61■□□□□ 0.57
VCPKMT-201ENST00000395859 NBPF15Q8N660 670 aa18.61■□□□□ 0.57
VCPKMT-201ENST00000395859 SZT2Q5T011 3432 aa18.61■□□□□ 0.57
VCPKMT-201ENST00000395859 GMPSP49915 693 aaPredicted RBP18.6■□□□□ 0.57
VCPKMT-201ENST00000395859 HLFQ16534 295 aa18.6■□□□□ 0.57
VCPKMT-201ENST00000395859 NIM1KQ8IY84 436 aa18.6■□□□□ 0.57
VCPKMT-201ENST00000395859 TRPM4Q8TD43 1214 aa18.6■□□□□ 0.57
VCPKMT-201ENST00000395859 GCC1Q96CN9 775 aa18.6■□□□□ 0.57
VCPKMT-201ENST00000395859 VPS33BQ9H267 617 aa18.6■□□□□ 0.57
VCPKMT-201ENST00000395859 HPS5Q9UPZ3 1129 aa18.6■□□□□ 0.57
VCPKMT-201ENST00000395859 BRCA2P51587 3418 aa18.59■□□□□ 0.57
VCPKMT-201ENST00000395859 HABP4Q5JVS0 413 aaKnown RBP18.59■□□□□ 0.57
VCPKMT-201ENST00000395859 RGMBQ6NW40 437 aa18.59■□□□□ 0.57
VCPKMT-201ENST00000395859 ZNF408Q9H9D4 720 aa18.59■□□□□ 0.57
VCPKMT-201ENST00000395859 AKAP11Q9UKA4 1901 aa18.59■□□□□ 0.57
VCPKMT-201ENST00000395859 CENPFP49454 3210 aa18.58■□□□□ 0.57
VCPKMT-201ENST00000395859 FAM177BA6PVY3 158 aa18.58■□□□□ 0.56
VCPKMT-201ENST00000395859 GNAT3A8MTJ3 354 aa18.58■□□□□ 0.56
VCPKMT-201ENST00000395859 TRPA1O75762 1119 aa18.58■□□□□ 0.56
VCPKMT-201ENST00000395859 KIF23Q02241 960 aaPredicted RBP18.58■□□□□ 0.56
VCPKMT-201ENST00000395859 DLK2Q6UY11 383 aa18.58■□□□□ 0.56
VCPKMT-201ENST00000395859 ZNRF3Q9ULT6 936 aa18.58■□□□□ 0.56
VCPKMT-201ENST00000395859 PPIP5K2O43314 1243 aa18.57■□□□□ 0.56
VCPKMT-201ENST00000395859 AOC3Q16853 763 aa18.57■□□□□ 0.56
VCPKMT-201ENST00000395859 CRAMP1Q96RY5 1269 aa18.57■□□□□ 0.56
VCPKMT-201ENST00000395859 RTFDC1Q9BY42 306 aaPredicted RBP18.57■□□□□ 0.56
VCPKMT-201ENST00000395859 CSRNP1Q96S65 589 aa18.56■□□□□ 0.56
VCPKMT-201ENST00000395859 IBTKQ9P2D0 1353 aaPredicted RBP18.55■□□□□ 0.56
VCPKMT-201ENST00000395859 SHTN1A0MZ66 631 aa18.55■□□□□ 0.56
VCPKMT-201ENST00000395859 AMER1Q5JTC6 1135 aaPredicted RBP18.55■□□□□ 0.56
VCPKMT-201ENST00000395859 USP48Q86UV5 1035 aa18.55■□□□□ 0.56
VCPKMT-201ENST00000395859 NUTM1Q86Y26 1132 aa18.55■□□□□ 0.56
VCPKMT-201ENST00000395859 CCDC102AQ96A19 550 aa18.55■□□□□ 0.56
VCPKMT-201ENST00000395859 PPEF1O14829 653 aaPredicted RBP18.54■□□□□ 0.56
VCPKMT-201ENST00000395859 POLR3GLQ9BT43 218 aa18.54■□□□□ 0.56
VCPKMT-201ENST00000395859 COL3A1P02461 1466 aaPredicted RBP18.53■□□□□ 0.56
VCPKMT-201ENST00000395859 BTBD11A6QL63 1104 aa18.53■□□□□ 0.56
VCPKMT-201ENST00000395859 SLC10A3P09131 477 aa18.53■□□□□ 0.56
VCPKMT-201ENST00000395859 SNRPA1P09661 255 aaKnown RBP18.53■□□□□ 0.56
VCPKMT-201ENST00000395859 C3orf67Q6ZVT6 689 aa18.53■□□□□ 0.56
VCPKMT-201ENST00000395859 GAS2L2Q8NHY3 880 aa18.53■□□□□ 0.56
VCPKMT-201ENST00000395859 NYXQ9GZU5 481 aa18.53■□□□□ 0.56
VCPKMT-201ENST00000395859 NUP98P52948 1817 aa18.53■□□□□ 0.56
VCPKMT-201ENST00000395859 A0A0C4DFX4 3053 aa18.53■□□□□ 0.56
VCPKMT-201ENST00000395859 POLR2AP24928 1970 aaKnown RBP18.52■□□□□ 0.56
VCPKMT-201ENST00000395859 DIAPH1O60610 1272 aaKnown RBP18.52■□□□□ 0.56
VCPKMT-201ENST00000395859 PKN2Q16513 984 aaKnown RBP18.52■□□□□ 0.56
VCPKMT-201ENST00000395859 RPGRQ92834 1020 aaKnown RBP18.52■□□□□ 0.56
VCPKMT-201ENST00000395859 GBA2Q9HCG7 927 aaPredicted RBP18.52■□□□□ 0.56
VCPKMT-201ENST00000395859 ATP6V0A2Q9Y487 856 aa18.52■□□□□ 0.56
VCPKMT-201ENST00000395859 GTF2E1P29083 439 aaPredicted RBP18.51■□□□□ 0.55
VCPKMT-201ENST00000395859 CNOT7Q9UIV1 285 aaKnown RBP18.51■□□□□ 0.55
VCPKMT-201ENST00000395859 UBN2Q6ZU65 1347 aa18.5■□□□□ 0.55
VCPKMT-201ENST00000395859 YDJCA8MPS7 323 aa18.5■□□□□ 0.55
VCPKMT-201ENST00000395859 FXR1P51114 621 aaKnown RBP eCLIP18.5■□□□□ 0.55
VCPKMT-201ENST00000395859 ZNF157P51786 506 aaPredicted RBP18.5■□□□□ 0.55
VCPKMT-201ENST00000395859 KIAA2012Q0VF49 1180 aa18.5■□□□□ 0.55
VCPKMT-201ENST00000395859 RBM17Q96I25 401 aaKnown RBP18.5■□□□□ 0.55
VCPKMT-201ENST00000395859 ERVV-1B6SEH8 477 aa18.49■□□□□ 0.55
VCPKMT-201ENST00000395859 RAD17O75943 681 aa18.48■□□□□ 0.55
VCPKMT-201ENST00000395859 EGFRP00533 1210 aa18.48■□□□□ 0.55
VCPKMT-201ENST00000395859 TCERG1O14776 1098 aaKnown RBP18.47■□□□□ 0.55
VCPKMT-201ENST00000395859 NTSR2O95665 410 aa18.47■□□□□ 0.55
VCPKMT-201ENST00000395859 TNIP1Q15025 636 aa18.47■□□□□ 0.55
VCPKMT-201ENST00000395859 KRT26Q7Z3Y9 468 aa18.47■□□□□ 0.55
VCPKMT-201ENST00000395859 MICALL2Q8IY33 904 aa18.47■□□□□ 0.55
VCPKMT-201ENST00000395859 REM2Q8IYK8 340 aaPredicted RBP18.47■□□□□ 0.55
VCPKMT-201ENST00000395859 C2orf69Q8N8R5 385 aa18.47■□□□□ 0.55
VCPKMT-201ENST00000395859 SUPT20HQ8NEM7 779 aa18.47■□□□□ 0.55
VCPKMT-201ENST00000395859 DPF2Q92785 391 aa18.47■□□□□ 0.55
VCPKMT-201ENST00000395859 BCL2L13Q9BXK5 485 aa18.47■□□□□ 0.55
VCPKMT-201ENST00000395859 KNSTRNQ9Y448 316 aa18.47■□□□□ 0.55
VCPKMT-201ENST00000395859 DUOX1Q9NRD9 1551 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms