RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 SUCLG2Q96I99 432 aa21.13■□□□□ 0.97
SQSTM1-202ENST00000389805 SPG7Q9UQ90 795 aa21.13■□□□□ 0.97
SQSTM1-202ENST00000389805 AOX1Q06278 1338 aa21.13■□□□□ 0.97
SQSTM1-202ENST00000389805 PHRF1Q9P1Y6 1649 aaKnown RBP21.13■□□□□ 0.97
SQSTM1-202ENST00000389805 LETM1O95202 739 aaPredicted RBP21.13■□□□□ 0.97
SQSTM1-202ENST00000389805 N4BP2Q86UW6 1770 aaPredicted RBP21.13■□□□□ 0.97
SQSTM1-202ENST00000389805 KDM4AO75164 1064 aa21.12■□□□□ 0.97
SQSTM1-202ENST00000389805 CHAF1AQ13111 956 aaPredicted RBP21.12■□□□□ 0.97
SQSTM1-202ENST00000389805 KCNF1Q9H3M0 494 aa21.12■□□□□ 0.97
SQSTM1-202ENST00000389805 HYPKQ9NX55 129 aa21.12■□□□□ 0.97
SQSTM1-202ENST00000389805 FIBPO43427 364 aa21.12■□□□□ 0.97
SQSTM1-202ENST00000389805 KLHDC4Q8TBB5 520 aa21.12■□□□□ 0.97
SQSTM1-202ENST00000389805 BICC1Q9H694 974 aaKnown RBP21.12■□□□□ 0.97
SQSTM1-202ENST00000389805 DDX21Q9NR30 783 aaKnown RBP eCLIP21.12■□□□□ 0.97
SQSTM1-202ENST00000389805 ALDH1L1O75891 902 aa21.11■□□□□ 0.97
SQSTM1-202ENST00000389805 GRM8O00222 908 aa21.11■□□□□ 0.97
SQSTM1-202ENST00000389805 SGSM2O43147 1006 aa21.11■□□□□ 0.97
SQSTM1-202ENST00000389805 CLASRPQ8N2M8 674 aaKnown RBP21.11■□□□□ 0.97
SQSTM1-202ENST00000389805 KIAA1524Q8TCG1 905 aa21.11■□□□□ 0.97
SQSTM1-202ENST00000389805 ZNF496Q96IT1 587 aaPredicted RBP21.11■□□□□ 0.97
SQSTM1-202ENST00000389805 NPHP3Q7Z494 1330 aa21.11■□□□□ 0.97
SQSTM1-202ENST00000389805 TMEM94Q12767 1356 aa21.11■□□□□ 0.97
SQSTM1-202ENST00000389805 IGKV5-2P06315 115 aa21.1■□□□□ 0.97
SQSTM1-202ENST00000389805 MCM2P49736 904 aa21.1■□□□□ 0.97
SQSTM1-202ENST00000389805 RIC3Q7Z5B4 369 aa21.1■□□□□ 0.97
SQSTM1-202ENST00000389805 SIL1Q9H173 461 aa21.1■□□□□ 0.97
SQSTM1-202ENST00000389805 SLC52A2Q9HAB3 445 aa21.1■□□□□ 0.97
SQSTM1-202ENST00000389805 TRPM3Q9HCF6 1732 aaPredicted RBP21.1■□□□□ 0.97
SQSTM1-202ENST00000389805 PHKG2P15735 406 aa21.1■□□□□ 0.97
SQSTM1-202ENST00000389805 MTX1Q13505 466 aa21.1■□□□□ 0.97
SQSTM1-202ENST00000389805 ZNF771Q7L3S4 317 aaPredicted RBP21.1■□□□□ 0.97
SQSTM1-202ENST00000389805 CNTROBQ8N137 903 aa21.1■□□□□ 0.97
SQSTM1-202ENST00000389805 LINS1Q8NG48 757 aa21.1■□□□□ 0.97
SQSTM1-202ENST00000389805 USP16Q9Y5T5 823 aa21.1■□□□□ 0.97
SQSTM1-202ENST00000389805 HSPA4P34932 840 aa21.09■□□□□ 0.97
SQSTM1-202ENST00000389805 ANAPC15P60006 121 aa21.09■□□□□ 0.97
SQSTM1-202ENST00000389805 HSP90AB4PQ58FF6 505 aa21.09■□□□□ 0.97
SQSTM1-202ENST00000389805 RASEFQ8IZ41 740 aa21.09■□□□□ 0.97
SQSTM1-202ENST00000389805 WDR33Q9C0J8 1336 aaKnown RBP21.09■□□□□ 0.97
SQSTM1-202ENST00000389805 TATP17735 454 aaPredicted RBP21.09■□□□□ 0.97
SQSTM1-202ENST00000389805 DIAPH3Q9NSV4 1193 aa21.09■□□□□ 0.97
SQSTM1-202ENST00000389805 COPS6Q7L5N1 327 aa21.09■□□□□ 0.97
SQSTM1-202ENST00000389805 XAGE3Q8WTP9 111 aa21.09■□□□□ 0.97
SQSTM1-202ENST00000389805 CGNQ9P2M7 1197 aaKnown RBP21.09■□□□□ 0.97
SQSTM1-202ENST00000389805 KDM6AO15550 1401 aaPredicted RBP21.08■□□□□ 0.97
SQSTM1-202ENST00000389805 AACSQ86V21 672 aa21.08■□□□□ 0.97
SQSTM1-202ENST00000389805 INTS4Q96HW7 963 aaKnown RBP21.08■□□□□ 0.97
SQSTM1-202ENST00000389805 CPA1P15085 419 aa21.08■□□□□ 0.96
SQSTM1-202ENST00000389805 LSG1Q9H089 658 aaKnown RBP21.08■□□□□ 0.96
SQSTM1-202ENST00000389805 CCDC8Q9H0W5 538 aaPredicted RBP21.08■□□□□ 0.96
SQSTM1-202ENST00000389805 SASH1O94885 1247 aa21.07■□□□□ 0.96
SQSTM1-202ENST00000389805 IFIT2P09913 472 aaKnown RBP21.07■□□□□ 0.96
SQSTM1-202ENST00000389805 CYP27B1O15528 508 aa21.07■□□□□ 0.96
SQSTM1-202ENST00000389805 NAA30Q147X3 362 aaPredicted RBP21.07■□□□□ 0.96
SQSTM1-202ENST00000389805 ZBTB22O15209 634 aa21.06■□□□□ 0.96
SQSTM1-202ENST00000389805 GLRX3O76003 335 aaKnown RBP21.06■□□□□ 0.96
SQSTM1-202ENST00000389805 DDX58O95786 925 aaKnown RBP21.06■□□□□ 0.96
SQSTM1-202ENST00000389805 CHMP3Q9Y3E7 222 aa21.06■□□□□ 0.96
SQSTM1-202ENST00000389805 SNX14Q9Y5W7 946 aa21.06■□□□□ 0.96
SQSTM1-202ENST00000389805 MEGF6O75095 1541 aa21.06■□□□□ 0.96
SQSTM1-202ENST00000389805 EAF2Q96CJ1 260 aaPredicted RBP21.06■□□□□ 0.96
SQSTM1-202ENST00000389805 EPHA10Q5JZY3 1008 aa21.06■□□□□ 0.96
SQSTM1-202ENST00000389805 ANKRD7Q92527 254 aa21.06■□□□□ 0.96
SQSTM1-202ENST00000389805 MYD88Q99836 296 aa21.06■□□□□ 0.96
SQSTM1-202ENST00000389805 ECHDC1Q9NTX5 307 aa21.06■□□□□ 0.96
SQSTM1-202ENST00000389805 TLR7Q9NYK1 1049 aaKnown RBP21.06■□□□□ 0.96
SQSTM1-202ENST00000389805 RAD50Q92878 1312 aa21.05■□□□□ 0.96
SQSTM1-202ENST00000389805 DDX54Q8TDD1 881 aaKnown RBP21.05■□□□□ 0.96
SQSTM1-202ENST00000389805 HSPA2P54652 639 aa21.05■□□□□ 0.96
SQSTM1-202ENST00000389805 PTH1RQ03431 593 aa21.05■□□□□ 0.96
SQSTM1-202ENST00000389805 MST1RQ04912 1400 aa21.04■□□□□ 0.96
SQSTM1-202ENST00000389805 IFNL2Q8IZJ0 200 aa21.04■□□□□ 0.96
SQSTM1-202ENST00000389805 OVOS2A0A0G2JMS6 1433 aa21.04■□□□□ 0.96
SQSTM1-202ENST00000389805 PTGS1P23219 599 aa21.04■□□□□ 0.96
SQSTM1-202ENST00000389805 TTC41PQ6P2S7 1318 aa21.04■□□□□ 0.96
SQSTM1-202ENST00000389805 GTF2E1P29083 439 aaPredicted RBP21.03■□□□□ 0.96
SQSTM1-202ENST00000389805 C16orf45Q96MC5 204 aaPredicted RBP21.03■□□□□ 0.96
SQSTM1-202ENST00000389805 G3BP1Q13283 466 aaKnown RBP eCLIP21.03■□□□□ 0.962e-7■□□□□ 10.8
SQSTM1-202ENST00000389805 NEURL1BA8MQ27 555 aa21.03■□□□□ 0.96
SQSTM1-202ENST00000389805 USP42Q9H9J4 1324 aaKnown RBP21.02■□□□□ 0.96
SQSTM1-202ENST00000389805 UBE2HP62256 183 aa21.02■□□□□ 0.96
SQSTM1-202ENST00000389805 RPAP1Q9BWH6 1393 aaPredicted RBP21.02■□□□□ 0.96
SQSTM1-202ENST00000389805 NCBP1Q09161 790 aaKnown RBP21.02■□□□□ 0.96
SQSTM1-202ENST00000389805 LARP1Q6PKG0 1096 aaKnown RBP21.02■□□□□ 0.96
SQSTM1-202ENST00000389805 ATP5J2-PTCD1G3V325 749 aa21.01■□□□□ 0.95
SQSTM1-202ENST00000389805 PTCD1O75127 700 aaKnown RBP21.01■□□□□ 0.95
SQSTM1-202ENST00000389805 GCKRQ14397 625 aa21.01■□□□□ 0.95
SQSTM1-202ENST00000389805 LRMPQ12912 555 aa21.01■□□□□ 0.95
SQSTM1-202ENST00000389805 BOLA2Q9H3K6 86 aa21.01■□□□□ 0.95
SQSTM1-202ENST00000389805 ZSCAN22P10073 491 aaPredicted RBP21■□□□□ 0.95
SQSTM1-202ENST00000389805 NEXNQ0ZGT2 675 aa21■□□□□ 0.95
SQSTM1-202ENST00000389805 ANKRD13DQ6ZTN6 518 aa21■□□□□ 0.95
SQSTM1-202ENST00000389805 TTC5Q8N0Z6 440 aa21■□□□□ 0.95
SQSTM1-202ENST00000389805 IL17RAQ96F46 866 aa21■□□□□ 0.95
SQSTM1-202ENST00000389805 FAM227BQ96M60 508 aa21■□□□□ 0.95
SQSTM1-202ENST00000389805 UTYO14607 1347 aa21■□□□□ 0.95
SQSTM1-202ENST00000389805 CTIFO43310 598 aaKnown RBP21■□□□□ 0.95
SQSTM1-202ENST00000389805 SYT1P21579 422 aa21■□□□□ 0.95
SQSTM1-202ENST00000389805 AK2P54819 239 aa21■□□□□ 0.95
SQSTM1-202ENST00000389805 ADCK5Q3MIX3 580 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms