RNA–Protein interactions for RNA: ENST00000379996.7

CDKL5-202, Transcript of cyclin dependent kinase like 5, humanhuman

TSL 1 (best) BASIC

Gene CDKL5, Length 3,449 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5-202ENST00000379996 TBC1D2Q9BYX2 928 aa9.66□□□□□ -0.86
CDKL5-202ENST00000379996 KDM4CQ9H3R0 1056 aa9.66□□□□□ -0.86
CDKL5-202ENST00000379996 COL24A1Q17RW2 1714 aa9.66□□□□□ -0.86
CDKL5-202ENST00000379996 IPO8O15397 1037 aaKnown RBP9.66□□□□□ -0.86
CDKL5-202ENST00000379996 SLC4A9Q96Q91 983 aa9.66□□□□□ -0.86
CDKL5-202ENST00000379996 MYH14Q7Z406 1995 aaKnown RBP9.65□□□□□ -0.86
CDKL5-202ENST00000379996 MKRN3Q13064 507 aaKnown RBP9.65□□□□□ -0.86
CDKL5-202ENST00000379996 KRT24Q2M2I5 525 aa9.65□□□□□ -0.86
CDKL5-202ENST00000379996 HDGFL1Q5TGJ6 251 aa9.65□□□□□ -0.86
CDKL5-202ENST00000379996 C1orf115Q9H7X2 142 aa9.65□□□□□ -0.86
CDKL5-202ENST00000379996 CYP19A1P11511 503 aaPredicted RBP9.65□□□□□ -0.86
CDKL5-202ENST00000379996 CANXP27824 592 aaKnown RBP9.65□□□□□ -0.86
CDKL5-202ENST00000379996 SMC4Q9NTJ3 1288 aa9.65□□□□□ -0.86
CDKL5-202ENST00000379996 ZBTB7BO15156 539 aaPredicted RBP9.65□□□□□ -0.87
CDKL5-202ENST00000379996 KCNQ2O43526 872 aa9.65□□□□□ -0.87
CDKL5-202ENST00000379996 ZMYND10O75800 440 aa9.65□□□□□ -0.87
CDKL5-202ENST00000379996 LAMB2P55268 1798 aa9.65□□□□□ -0.87
CDKL5-202ENST00000379996 LOC102724428A0A0B4J2F2 783 aa9.64□□□□□ -0.87
CDKL5-202ENST00000379996 SIK1P57059 783 aa9.64□□□□□ -0.87
CDKL5-202ENST00000379996 CCDC125Q86Z20 511 aa9.64□□□□□ -0.87
CDKL5-202ENST00000379996 SIRT2Q8IXJ6 389 aa9.64□□□□□ -0.87
CDKL5-202ENST00000379996 UPF1Q92900 1129 aaKnown RBP eCLIP9.64□□□□□ -0.87
CDKL5-202ENST00000379996 STK31Q9BXU1 1019 aa9.64□□□□□ -0.87
CDKL5-202ENST00000379996 API5Q9BZZ5 524 aaKnown RBP9.64□□□□□ -0.87
CDKL5-202ENST00000379996 STARD3NLO95772 234 aa9.63□□□□□ -0.87
CDKL5-202ENST00000379996 RBM25P49756 843 aaKnown RBP9.63□□□□□ -0.87
CDKL5-202ENST00000379996 KIF2CQ99661 725 aa9.63□□□□□ -0.87
CDKL5-202ENST00000379996 ACSBG1Q96GR2 724 aa9.63□□□□□ -0.87
CDKL5-202ENST00000379996 USP16Q9Y5T5 823 aa9.63□□□□□ -0.87
CDKL5-202ENST00000379996 AFDNP55196 1824 aaKnown RBP9.63□□□□□ -0.87
CDKL5-202ENST00000379996 A0A0G2JS52 829 aa9.62□□□□□ -0.87
CDKL5-202ENST00000379996 IL6STP40189 918 aaPredicted RBP9.62□□□□□ -0.87
CDKL5-202ENST00000379996 INTS3Q68E01 1043 aaKnown RBP9.62□□□□□ -0.87
CDKL5-202ENST00000379996 NUP98P52948 1817 aa9.62□□□□□ -0.87
CDKL5-202ENST00000379996 COL15A1P39059 1388 aa9.62□□□□□ -0.87
CDKL5-202ENST00000379996 DPY19L2Q6NUT2 758 aa9.62□□□□□ -0.87
CDKL5-202ENST00000379996 INTS5Q6P9B9 1019 aaKnown RBP9.62□□□□□ -0.87
CDKL5-202ENST00000379996 SGIP1Q9BQI5 828 aa9.62□□□□□ -0.87
CDKL5-202ENST00000379996 CHPF2Q9P2E5 772 aa9.62□□□□□ -0.87
CDKL5-202ENST00000379996 ADCY9O60503 1353 aa9.62□□□□□ -0.87
CDKL5-202ENST00000379996 PRAMEF22A3QJZ6 481 aa9.62□□□□□ -0.87
CDKL5-202ENST00000379996 FLIIQ13045 1269 aa9.62□□□□□ -0.87
CDKL5-202ENST00000379996 NLRP7Q8WX94 980 aa9.62□□□□□ -0.87
CDKL5-202ENST00000379996 NBPF26B4DH59 902 aa9.61□□□□□ -0.87
CDKL5-202ENST00000379996 ITPK1Q13572 414 aa9.61□□□□□ -0.87
CDKL5-202ENST00000379996 NBPF14Q5TI25 921 aa9.61□□□□□ -0.87
CDKL5-202ENST00000379996 NBPF10Q6P3W6 841 aaKnown RBP9.61□□□□□ -0.87
CDKL5-202ENST00000379996 NBPF15Q8N660 670 aa9.61□□□□□ -0.87
CDKL5-202ENST00000379996 DNAJC10Q8IXB1 793 aa9.6□□□□□ -0.87
CDKL5-202ENST00000379996 FTSJ3Q8IY81 847 aaKnown RBP9.6□□□□□ -0.87
CDKL5-202ENST00000379996 ATP6V1AP38606 617 aa9.6□□□□□ -0.87
CDKL5-202ENST00000379996 PTF1AQ7RTS3 328 aa9.6□□□□□ -0.87
CDKL5-202ENST00000379996 SYTL4Q96C24 671 aaPredicted RBP9.6□□□□□ -0.87
CDKL5-202ENST00000379996 CHMP4BQ9H444 224 aaKnown RBP9.6□□□□□ -0.87
CDKL5-202ENST00000379996 CCDC87Q9NVE4 849 aa9.6□□□□□ -0.87
CDKL5-202ENST00000379996 NRXN2Q9P2S2 1712 aa9.6□□□□□ -0.87
CDKL5-202ENST00000379996 ERVV-1B6SEH8 477 aa9.6□□□□□ -0.87
CDKL5-202ENST00000379996 APBB1O00213 710 aa9.6□□□□□ -0.87
CDKL5-202ENST00000379996 ELL2O00472 640 aaPredicted RBP9.6□□□□□ -0.87
CDKL5-202ENST00000379996 EIF5P55010 431 aaKnown RBP9.6□□□□□ -0.87
CDKL5-202ENST00000379996 ITPRIPQ8IWB1 547 aa9.6□□□□□ -0.87
CDKL5-202ENST00000379996 LINC00116Q8NCU8 138 aa9.6□□□□□ -0.87
CDKL5-202ENST00000379996 DDX58O95786 925 aaKnown RBP9.59□□□□□ -0.87
CDKL5-202ENST00000379996 FECHP22830 423 aa9.59□□□□□ -0.87
CDKL5-202ENST00000379996 CCT4P50991 539 aaKnown RBP9.59□□□□□ -0.87
CDKL5-202ENST00000379996 BMP2KLQ5H9B9 411 aa9.59□□□□□ -0.87
CDKL5-202ENST00000379996 KSR2Q6VAB6 950 aa9.59□□□□□ -0.87
CDKL5-202ENST00000379996 UTYO14607 1347 aa9.59□□□□□ -0.87
CDKL5-202ENST00000379996 A0A087WZG4 1122 aa9.59□□□□□ -0.87
CDKL5-202ENST00000379996 PLBD2Q8NHP8 589 aa9.59□□□□□ -0.87
CDKL5-202ENST00000379996 SNX21Q969T3 373 aa9.59□□□□□ -0.87
CDKL5-202ENST00000379996 PTCD1O75127 700 aaKnown RBP9.59□□□□□ -0.87
CDKL5-202ENST00000379996 CRKLP46109 303 aaKnown RBP9.59□□□□□ -0.87
CDKL5-202ENST00000379996 PROSER3Q2NL68 480 aa9.59□□□□□ -0.87
CDKL5-202ENST00000379996 CHD1LQ86WJ1 897 aa9.59□□□□□ -0.87
CDKL5-202ENST00000379996 TMEM106CQ9BVX2 250 aa9.59□□□□□ -0.87
CDKL5-202ENST00000379996 TRIM37O94972 964 aa9.58□□□□□ -0.88
CDKL5-202ENST00000379996 G2E3Q7L622 706 aa9.58□□□□□ -0.88
CDKL5-202ENST00000379996 C22orf23Q9BZE7 217 aa9.58□□□□□ -0.88
CDKL5-202ENST00000379996 CCNL1Q9UK58 526 aaPredicted RBP9.58□□□□□ -0.88
CDKL5-202ENST00000379996 FSD2A1L4K1 749 aa9.58□□□□□ -0.88
CDKL5-202ENST00000379996 RPS6KA4O75676 772 aa9.58□□□□□ -0.88
CDKL5-202ENST00000379996 ALDH1L1O75891 902 aa9.58□□□□□ -0.88
CDKL5-202ENST00000379996 TRIM28Q13263 835 aaKnown RBP9.58□□□□□ -0.88
CDKL5-202ENST00000379996 CAMKK2Q96RR4 588 aa9.58□□□□□ -0.88
CDKL5-202ENST00000379996 BRPF3Q9ULD4 1205 aa9.58□□□□□ -0.88
CDKL5-202ENST00000379996 CASZ1Q86V15 1759 aa9.58□□□□□ -0.88
CDKL5-202ENST00000379996 BECN1Q14457 450 aa9.57□□□□□ -0.88
CDKL5-202ENST00000379996 PHAXQ9H814 394 aaKnown RBP9.57□□□□□ -0.88
CDKL5-202ENST00000379996 EMILIN3Q9NT22 766 aa9.57□□□□□ -0.88
CDKL5-202ENST00000379996 EIF2S2P20042 333 aaKnown RBP9.57□□□□□ -0.88
CDKL5-202ENST00000379996 FAM182BQ5T319 152 aa9.57□□□□□ -0.88
CDKL5-202ENST00000379996 RIC1Q4ADV7 1423 aa9.57□□□□□ -0.88
CDKL5-202ENST00000379996 MAP3K15Q6ZN16 1313 aa9.57□□□□□ -0.88
CDKL5-202ENST00000379996 PDE4DQ08499 809 aa9.57□□□□□ -0.88
CDKL5-202ENST00000379996 BEND3Q5T5X7 828 aa9.57□□□□□ -0.88
CDKL5-202ENST00000379996 METTL22Q9BUU2 404 aaPredicted RBP9.57□□□□□ -0.88
CDKL5-202ENST00000379996 A1BGP04217 495 aa9.56□□□□□ -0.88
CDKL5-202ENST00000379996 DNAAF4Q8WXU2 420 aa9.56□□□□□ -0.88
CDKL5-202ENST00000379996 DDX12PQ92771 950 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms