RNA–Protein interactions for RNA: ENST00000377670.8

HIF3A-205, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HIF3A, Length 5,852 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-205ENST00000377670 GCP02774 474 aa12.6□□□□□ -0.39
HIF3A-205ENST00000377670 MCM2P49736 904 aa12.6□□□□□ -0.39
HIF3A-205ENST00000377670 CYP46A1Q9Y6A2 500 aa12.6□□□□□ -0.39
HIF3A-205ENST00000377670 H0YIN7 160 aa12.6□□□□□ -0.39
HIF3A-205ENST00000377670 CBX1P83916 185 aa12.6□□□□□ -0.39
HIF3A-205ENST00000377670 PLS1Q14651 629 aa12.6□□□□□ -0.39
HIF3A-205ENST00000377670 PDCL2Q8N4E4 241 aa12.6□□□□□ -0.39
HIF3A-205ENST00000377670 NFATC2IPQ8NCF5 419 aa12.6□□□□□ -0.39
HIF3A-205ENST00000377670 SLAIN2Q9P270 581 aa12.6□□□□□ -0.39
HIF3A-205ENST00000377670 BCS1LQ9Y276 419 aa12.6□□□□□ -0.39
HIF3A-205ENST00000377670 CCDC97Q96F63 343 aaPredicted RBP12.6□□□□□ -0.39
HIF3A-205ENST00000377670 UTP14AQ9BVJ6 771 aaKnown RBP12.6□□□□□ -0.39
HIF3A-205ENST00000377670 COL17A1Q9UMD9 1497 aaPredicted RBP12.6□□□□□ -0.39
HIF3A-205ENST00000377670 BRPF1P55201 1214 aaPredicted RBP12.6□□□□□ -0.39
HIF3A-205ENST00000377670 ZSCAN30Q86W11 494 aa12.6□□□□□ -0.39
HIF3A-205ENST00000377670 RIMBP2O15034 1052 aa12.59□□□□□ -0.39
HIF3A-205ENST00000377670 PPFIA3O75145 1194 aa12.59□□□□□ -0.39
HIF3A-205ENST00000377670 ZGPATQ8N5A5 531 aaKnown RBP12.59□□□□□ -0.39
HIF3A-205ENST00000377670 SNRKQ9NRH2 765 aa12.59□□□□□ -0.39
HIF3A-205ENST00000377670 TRPC5Q9UL62 973 aaPredicted RBP12.59□□□□□ -0.39
HIF3A-205ENST00000377670 ATP10AO60312 1499 aa12.59□□□□□ -0.39
HIF3A-205ENST00000377670 ARHGEF12Q9NZN5 1544 aa12.59□□□□□ -0.39
HIF3A-205ENST00000377670 TNMDQ9H2S6 317 aa12.59□□□□□ -0.39
HIF3A-205ENST00000377670 ARHGAP27Q6ZUM4 889 aa12.59□□□□□ -0.39
HIF3A-205ENST00000377670 DZIP3Q86Y13 1208 aaKnown RBP12.59□□□□□ -0.39
HIF3A-205ENST00000377670 FAM177A1Q8N128 213 aaPredicted RBP12.59□□□□□ -0.39
HIF3A-205ENST00000377670 STIM1Q13586 685 aa12.59□□□□□ -0.39
HIF3A-205ENST00000377670 PRPF40BQ6NWY9 871 aaKnown RBP12.59□□□□□ -0.39
HIF3A-205ENST00000377670 IQCA1Q86XH1 822 aa12.59□□□□□ -0.39
HIF3A-205ENST00000377670 JMYQ8N9B5 988 aa12.59□□□□□ -0.39
HIF3A-205ENST00000377670 NSFL1CQ9UNZ2 370 aaKnown RBP12.59□□□□□ -0.39
HIF3A-205ENST00000377670 POLR3AO14802 1390 aaPredicted RBP12.58□□□□□ -0.4
HIF3A-205ENST00000377670 CASTP20810 708 aaKnown RBP12.58□□□□□ -0.4
HIF3A-205ENST00000377670 STK38Q15208 465 aa12.58□□□□□ -0.4
HIF3A-205ENST00000377670 TTC37Q6PGP7 1564 aa12.58□□□□□ -0.4
HIF3A-205ENST00000377670 SMARCE1Q969G3 411 aa12.58□□□□□ -0.4
HIF3A-205ENST00000377670 ZNF396Q96N95 335 aaPredicted RBP12.58□□□□□ -0.4
HIF3A-205ENST00000377670 COPS6Q7L5N1 327 aa12.58□□□□□ -0.4
HIF3A-205ENST00000377670 DHX37Q8IY37 1157 aaKnown RBP12.58□□□□□ -0.4
HIF3A-205ENST00000377670 CNBD1Q8NA66 436 aa12.58□□□□□ -0.4
HIF3A-205ENST00000377670 CTCFLQ8NI51 663 aaPredicted RBP12.58□□□□□ -0.4
HIF3A-205ENST00000377670 WASF1Q92558 559 aa12.58□□□□□ -0.4
HIF3A-205ENST00000377670 DDX11Q96FC9 970 aa12.58□□□□□ -0.4
HIF3A-205ENST00000377670 EIF2AK4Q9P2K8 1649 aaKnown RBP12.58□□□□□ -0.4
HIF3A-205ENST00000377670 TANGO6Q9C0B7 1094 aa12.58□□□□□ -0.4
HIF3A-205ENST00000377670 ABCA8O94911 1581 aa12.58□□□□□ -0.4
HIF3A-205ENST00000377670 CHD1O14646 1710 aa12.57□□□□□ -0.4
HIF3A-205ENST00000377670 SERPINC1P01008 464 aa12.57□□□□□ -0.4
HIF3A-205ENST00000377670 MRPL50Q8N5N7 158 aaKnown RBP12.57□□□□□ -0.4
HIF3A-205ENST00000377670 XAGE3Q8WTP9 111 aa12.57□□□□□ -0.4
HIF3A-205ENST00000377670 SAMD9LQ8IVG5 1584 aa12.57□□□□□ -0.4
HIF3A-205ENST00000377670 KIAA0754O94854 1291 aa12.57□□□□□ -0.4
HIF3A-205ENST00000377670 HOXC9P31274 260 aa12.57□□□□□ -0.4
HIF3A-205ENST00000377670 LIG1P18858 919 aa12.57□□□□□ -0.4
HIF3A-205ENST00000377670 VAMP4O75379 141 aa12.57□□□□□ -0.4
HIF3A-205ENST00000377670 ANKRD1Q15327 319 aa12.57□□□□□ -0.4
HIF3A-205ENST00000377670 LARGE2Q8N3Y3 721 aa12.57□□□□□ -0.4
HIF3A-205ENST00000377670 KIF22Q14807 665 aa12.56□□□□□ -0.4
HIF3A-205ENST00000377670 BLOC1S2Q6QNY1 142 aa12.56□□□□□ -0.4
HIF3A-205ENST00000377670 PTPRCP08575 1304 aa12.56□□□□□ -0.4
HIF3A-205ENST00000377670 PDCP20941 246 aa12.56□□□□□ -0.4
HIF3A-205ENST00000377670 FILIP1LQ4L180 1135 aa12.56□□□□□ -0.4
HIF3A-205ENST00000377670 FERMT3Q86UX7 667 aa12.56□□□□□ -0.4
HIF3A-205ENST00000377670 PHAXQ9H814 394 aaKnown RBP12.56□□□□□ -0.4
HIF3A-205ENST00000377670 PDRG1Q9NUG6 133 aa12.56□□□□□ -0.4
HIF3A-205ENST00000377670 TBC1D9Q6ZT07 1266 aa12.56□□□□□ -0.4
HIF3A-205ENST00000377670 RNF41Q9H4P4 317 aaPredicted RBP12.56□□□□□ -0.4
HIF3A-205ENST00000377670 TSPOAP1O95153 1857 aa12.56□□□□□ -0.4
HIF3A-205ENST00000377670 WDR33Q9C0J8 1336 aaKnown RBP12.56□□□□□ -0.4
HIF3A-205ENST00000377670 PICALMQ13492 652 aa12.56□□□□□ -0.4
HIF3A-205ENST00000377670 CWF19L2Q2TBE0 894 aaKnown RBP12.56□□□□□ -0.4
HIF3A-205ENST00000377670 TAF3Q5VWG9 929 aa12.56□□□□□ -0.4
HIF3A-205ENST00000377670 PA2G4Q9UQ80 394 aaKnown RBP12.56□□□□□ -0.4
HIF3A-205ENST00000377670 G2E3Q7L622 706 aa12.55□□□□□ -0.4
HIF3A-205ENST00000377670 SYCE3A1L190 88 aa12.55□□□□□ -0.4
HIF3A-205ENST00000377670 PDE4BQ07343 736 aa12.55□□□□□ -0.4
HIF3A-205ENST00000377670 TBX22Q9Y458 520 aa12.55□□□□□ -0.4
HIF3A-205ENST00000377670 PDE6BP35913 854 aa12.55□□□□□ -0.4
HIF3A-205ENST00000377670 PPP4R3BQ5MIZ7 849 aa12.55□□□□□ -0.4
HIF3A-205ENST00000377670 NOD1Q9Y239 953 aa12.55□□□□□ -0.4
HIF3A-205ENST00000377670 PCDH11XQ9BZA7 1347 aa12.55□□□□□ -0.4
HIF3A-205ENST00000377670 PCDH11YQ9BZA8 1340 aa12.55□□□□□ -0.4
HIF3A-205ENST00000377670 TTF1Q15361 905 aaPredicted RBP12.55□□□□□ -0.4
HIF3A-205ENST00000377670 ANKRD13DQ6ZTN6 518 aa12.55□□□□□ -0.4
HIF3A-205ENST00000377670 FLAD1Q8NFF5 587 aa12.55□□□□□ -0.4
HIF3A-205ENST00000377670 ZNF526Q8TF50 670 aaPredicted RBP12.55□□□□□ -0.4
HIF3A-205ENST00000377670 CRNKL1Q9BZJ0 848 aaKnown RBP12.55□□□□□ -0.4
HIF3A-205ENST00000377670 IL16Q14005 1332 aa12.55□□□□□ -0.4
HIF3A-205ENST00000377670 GLRX3O76003 335 aaKnown RBP12.55□□□□□ -0.4
HIF3A-205ENST00000377670 SUPT20HQ8NEM7 779 aa12.55□□□□□ -0.4
HIF3A-205ENST00000377670 FLT4P35916 1363 aa12.55□□□□□ -0.4
HIF3A-205ENST00000377670 EIF3JO75822 258 aaKnown RBP12.54□□□□□ -0.4
HIF3A-205ENST00000377670 FAM193AP78312 1265 aa12.54□□□□□ -0.4
HIF3A-205ENST00000377670 SLC4A8Q2Y0W8 1093 aa12.54□□□□□ -0.4
HIF3A-205ENST00000377670 SAMM50Q9Y512 469 aa12.54□□□□□ -0.4
HIF3A-205ENST00000377670 POTEJP0CG39 1038 aa12.54□□□□□ -0.4
HIF3A-205ENST00000377670 LARP1BQ659C4 914 aaKnown RBP12.54□□□□□ -0.4
HIF3A-205ENST00000377670 TRMT1LQ7Z2T5 733 aaKnown RBP12.54□□□□□ -0.4
HIF3A-205ENST00000377670 CCDC83Q8IWF9 413 aa12.54□□□□□ -0.4
HIF3A-205ENST00000377670 PICK1Q9NRD5 415 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms