RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 C1orf167Q5SNV9 1468 aa17.11■□□□□ 0.33
CD48-201ENST00000368045 PRAMEF22A3QJZ6 481 aa17.1■□□□□ 0.33
CD48-201ENST00000368045 IGKV5-2P06315 115 aa17.1■□□□□ 0.33
CD48-201ENST00000368045 GDPD2Q9HCC8 539 aa17.1■□□□□ 0.33
CD48-201ENST00000368045 CNPY2Q9Y2B0 182 aa17.1■□□□□ 0.33
CD48-201ENST00000368045 NPHP3Q7Z494 1330 aa17.1■□□□□ 0.33
CD48-201ENST00000368045 JCADQ9P266 1359 aa17.1■□□□□ 0.33
CD48-201ENST00000368045 NEURL1BA8MQ27 555 aa17.1■□□□□ 0.33
CD48-201ENST00000368045 GJB2P29033 226 aa17.1■□□□□ 0.33
CD48-201ENST00000368045 NMIQ13287 307 aaPredicted RBP17.1■□□□□ 0.33
CD48-201ENST00000368045 ADCK5Q3MIX3 580 aa17.1■□□□□ 0.33
CD48-201ENST00000368045 LMOD2Q6P5Q4 547 aa17.1■□□□□ 0.33
CD48-201ENST00000368045 METTL22Q9BUU2 404 aaPredicted RBP17.1■□□□□ 0.33
CD48-201ENST00000368045 MTMR6Q9Y217 621 aa17.1■□□□□ 0.33
CD48-201ENST00000368045 RFX7Q2KHR2 1363 aa17.09■□□□□ 0.33
CD48-201ENST00000368045 MED23Q9ULK4 1368 aa17.09■□□□□ 0.33
CD48-201ENST00000368045 LARGE1O95461 756 aa17.09■□□□□ 0.33
CD48-201ENST00000368045 TATP17735 454 aaPredicted RBP17.09■□□□□ 0.33
CD48-201ENST00000368045 KCNJ4P48050 445 aa17.09■□□□□ 0.33
CD48-201ENST00000368045 XPCQ01831 940 aaPredicted RBP17.09■□□□□ 0.33
CD48-201ENST00000368045 GCKRQ14397 625 aa17.09■□□□□ 0.33
CD48-201ENST00000368045 CCDC83Q8IWF9 413 aa17.09■□□□□ 0.33
CD48-201ENST00000368045 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.09■□□□□ 0.33
CD48-201ENST00000368045 HMG20BQ9P0W2 317 aa17.09■□□□□ 0.33
CD48-201ENST00000368045 KDM6AO15550 1401 aaPredicted RBP17.08■□□□□ 0.33
CD48-201ENST00000368045 AIMP1Q12904 312 aaKnown RBP17.08■□□□□ 0.33
CD48-201ENST00000368045 TSGA10IPQ3SY00 556 aa17.08■□□□□ 0.33
CD48-201ENST00000368045 SLC27A2O14975 620 aa17.07■□□□□ 0.32
CD48-201ENST00000368045 RRP9O43818 475 aaKnown RBP17.07■□□□□ 0.32
CD48-201ENST00000368045 CPA1P15085 419 aa17.07■□□□□ 0.32
CD48-201ENST00000368045 PHKG2P15735 406 aa17.07■□□□□ 0.32
CD48-201ENST00000368045 PDCP20941 246 aa17.07■□□□□ 0.32
CD48-201ENST00000368045 FOXD4L6Q3SYB3 417 aaPredicted RBP17.07■□□□□ 0.32
CD48-201ENST00000368045 FOXD4L3Q6VB84 417 aaPredicted RBP17.07■□□□□ 0.32
CD48-201ENST00000368045 RNF214Q8ND24 703 aa17.07■□□□□ 0.32
CD48-201ENST00000368045 COPRSQ9NQ92 184 aa17.07■□□□□ 0.32
CD48-201ENST00000368045 SETD1BQ9UPS6 1966 aaKnown RBP17.07■□□□□ 0.32
CD48-201ENST00000368045 ADAMTSL3P82987 1691 aa17.07■□□□□ 0.32
CD48-201ENST00000368045 XAGE3Q8WTP9 111 aa17.07■□□□□ 0.32
CD48-201ENST00000368045 FAM227BQ96M60 508 aa17.07■□□□□ 0.32
CD48-201ENST00000368045 FSD1Q9BTV5 496 aa17.07■□□□□ 0.32
CD48-201ENST00000368045 CCDC8Q9H0W5 538 aaPredicted RBP17.07■□□□□ 0.32
CD48-201ENST00000368045 PROSER2Q86WR7 435 aaPredicted RBP17.06■□□□□ 0.32
CD48-201ENST00000368045 IFNL2Q8IZJ0 200 aa17.06■□□□□ 0.32
CD48-201ENST00000368045 C19orf44Q9H6X5 657 aa17.06■□□□□ 0.32
CD48-201ENST00000368045 ALS2Q96Q42 1657 aa17.06■□□□□ 0.32
CD48-201ENST00000368045 SNRPA1P09661 255 aaKnown RBP17.05■□□□□ 0.32
CD48-201ENST00000368045 ATP5JP18859 108 aa17.05■□□□□ 0.32
CD48-201ENST00000368045 KRT32Q14532 448 aa17.05■□□□□ 0.32
CD48-201ENST00000368045 ME3Q16798 604 aa17.05■□□□□ 0.32
CD48-201ENST00000368045 BLOC1S2Q6QNY1 142 aa17.05■□□□□ 0.32
CD48-201ENST00000368045 SCN11AQ9UI33 1791 aa17.05■□□□□ 0.32
CD48-201ENST00000368045 ST3GAL1Q11201 340 aa17.05■□□□□ 0.32
CD48-201ENST00000368045 COPS6Q7L5N1 327 aa17.05■□□□□ 0.32
CD48-201ENST00000368045 MYD88Q99836 296 aa17.05■□□□□ 0.32
CD48-201ENST00000368045 LARP6Q9BRS8 491 aaKnown RBP17.05■□□□□ 0.32
CD48-201ENST00000368045 BOLA2Q9H3K6 86 aa17.05■□□□□ 0.32
CD48-201ENST00000368045 NLRP2Q9NX02 1062 aa17.05■□□□□ 0.32
CD48-201ENST00000368045 TLR7Q9NYK1 1049 aaKnown RBP17.05■□□□□ 0.32
CD48-201ENST00000368045 A0A0D9SFI3 127 aa17.04■□□□□ 0.32
CD48-201ENST00000368045 FIBPO43427 364 aa17.04■□□□□ 0.32
CD48-201ENST00000368045 PTMAP06454 111 aaKnown RBP17.04■□□□□ 0.32
CD48-201ENST00000368045 RPS6KB1P23443 525 aa17.04■□□□□ 0.32
CD48-201ENST00000368045 RABL6Q3YEC7 729 aaPredicted RBP17.04■□□□□ 0.32
CD48-201ENST00000368045 USPL1Q5W0Q7 1092 aa17.04■□□□□ 0.32
CD48-201ENST00000368045 ANKRD13DQ6ZTN6 518 aa17.04■□□□□ 0.32
CD48-201ENST00000368045 TICAM2Q86XR7 235 aa17.04■□□□□ 0.32
CD48-201ENST00000368045 DCAF5Q96JK2 942 aa17.04■□□□□ 0.32
CD48-201ENST00000368045 TPCN1Q9ULQ1 816 aa17.04■□□□□ 0.32
CD48-201ENST00000368045 C5P01031 1676 aa17.03■□□□□ 0.32
CD48-201ENST00000368045 ELP1O95163 1332 aa17.03■□□□□ 0.32
CD48-201ENST00000368045 SLC39A6Q13433 755 aa17.03■□□□□ 0.32
CD48-201ENST00000368045 LRP10Q7Z4F1 713 aa17.03■□□□□ 0.32
CD48-201ENST00000368045 SIL1Q9H173 461 aa17.03■□□□□ 0.32
CD48-201ENST00000368045 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.03■□□□□ 0.32
CD48-201ENST00000368045 MYL6BP14649 208 aa17.02■□□□□ 0.32
CD48-201ENST00000368045 RFX5P48382 616 aaPredicted RBP17.02■□□□□ 0.32
CD48-201ENST00000368045 ZC3H6P61129 1189 aaKnown RBP17.02■□□□□ 0.32
CD48-201ENST00000368045 TTC5Q8N0Z6 440 aa17.02■□□□□ 0.32
CD48-201ENST00000368045 NFATC2IPQ8NCF5 419 aa17.02■□□□□ 0.32
CD48-201ENST00000368045 ZNF496Q96IT1 587 aaPredicted RBP17.02■□□□□ 0.32
CD48-201ENST00000368045 FMNL2Q96PY5 1086 aa17.02■□□□□ 0.32
CD48-201ENST00000368045 KRT85P78386 507 aa17.02■□□□□ 0.31
CD48-201ENST00000368045 DNM1Q05193 864 aaKnown RBP17.02■□□□□ 0.31
CD48-201ENST00000368045 EPHA10Q5JZY3 1008 aa17.02■□□□□ 0.31
CD48-201ENST00000368045 LARP1BQ659C4 914 aaKnown RBP17.02■□□□□ 0.31
CD48-201ENST00000368045 FUCA2Q9BTY2 467 aa17.02■□□□□ 0.31
CD48-201ENST00000368045 MEGF6O75095 1541 aa17.01■□□□□ 0.31
CD48-201ENST00000368045 DCCP43146 1447 aa17.01■□□□□ 0.31
CD48-201ENST00000368045 VPS37CA5D8V6 355 aaPredicted RBP17.01■□□□□ 0.31
CD48-201ENST00000368045 TAF5LO75529 589 aa17.01■□□□□ 0.31
CD48-201ENST00000368045 TRHP20396 242 aaPredicted RBP17.01■□□□□ 0.31
CD48-201ENST00000368045 TNNI3KQ59H18 835 aa17.01■□□□□ 0.31
CD48-201ENST00000368045 FPGT-TNNI3KV9GXZ4 949 aa17.01■□□□□ 0.31
CD48-201ENST00000368045 PTPN12Q05209 780 aaKnown RBP17■□□□□ 0.31
CD48-201ENST00000368045 NECAB1Q8N987 351 aa17■□□□□ 0.31
CD48-201ENST00000368045 U3KPZ7 1027 aaPredicted RBP17■□□□□ 0.31
CD48-201ENST00000368045 KIAA2012Q0VF49 1180 aa17■□□□□ 0.31
CD48-201ENST00000368045 HSP90AA2PQ14568 343 aaPredicted RBP17■□□□□ 0.31
CD48-201ENST00000368045 TOB2Q14106 344 aaPredicted RBP16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms