RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 RABEP1Q15276 862 aa9.98□□□□□ -0.81
SYNE1-206ENST00000367253 CERKQ8TCT0 537 aa9.98□□□□□ -0.81
SYNE1-206ENST00000367253 ACRBPQ8NEB7 543 aa9.98□□□□□ -0.81
SYNE1-206ENST00000367253 SMARCE1Q969G3 411 aa9.98□□□□□ -0.81
SYNE1-206ENST00000367253 FERMT1Q9BQL6 677 aa9.98□□□□□ -0.81
SYNE1-206ENST00000367253 RASSF4Q9H2L5 321 aa9.98□□□□□ -0.81
SYNE1-206ENST00000367253 LIMCH1Q9UPQ0 1083 aa9.98□□□□□ -0.81
SYNE1-206ENST00000367253 ZNF853P0CG23 659 aa9.97□□□□□ -0.81
SYNE1-206ENST00000367253 PSMA5P28066 241 aa9.97□□□□□ -0.81
SYNE1-206ENST00000367253 IFIT5Q13325 482 aaKnown RBP9.97□□□□□ -0.81
SYNE1-206ENST00000367253 ARMC9Q7Z3E5 817 aa9.97□□□□□ -0.81
SYNE1-206ENST00000367253 CNKSR1Q969H4 720 aa9.97□□□□□ -0.81
SYNE1-206ENST00000367253 RNF216Q9NWF9 866 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-206ENST00000367253 CLASP1Q7Z460 1538 aa9.97□□□□□ -0.81
SYNE1-206ENST00000367253 FAM114A1Q8IWE2 563 aa9.97□□□□□ -0.81
SYNE1-206ENST00000367253 CCDC178Q5BJE1 867 aa9.97□□□□□ -0.81
SYNE1-206ENST00000367253 ZKSCAN2Q63HK3 967 aa9.97□□□□□ -0.81
SYNE1-206ENST00000367253 FSD1Q9BTV5 496 aa9.97□□□□□ -0.81
SYNE1-206ENST00000367253 TSPY26PQ9H489 355 aa9.97□□□□□ -0.81
SYNE1-206ENST00000367253 MAST3O60307 1309 aa9.97□□□□□ -0.81
SYNE1-206ENST00000367253 USP48Q86UV5 1035 aa9.97□□□□□ -0.81
SYNE1-206ENST00000367253 PIBF1Q8WXW3 757 aa9.97□□□□□ -0.81
SYNE1-206ENST00000367253 FAM107BQ9H098 131 aa9.97□□□□□ -0.81
SYNE1-206ENST00000367253 TPD52L2O43399 206 aaKnown RBP9.96□□□□□ -0.81
SYNE1-206ENST00000367253 IL2RBP14784 551 aa9.96□□□□□ -0.81
SYNE1-206ENST00000367253 CCDC146Q8IYE0 955 aa9.96□□□□□ -0.81
SYNE1-206ENST00000367253 SLC17A8Q8NDX2 589 aa9.96□□□□□ -0.81
SYNE1-206ENST00000367253 NUDT16Q96DE0 195 aaKnown RBP9.96□□□□□ -0.81
SYNE1-206ENST00000367253 SDF4Q9BRK5 362 aa9.96□□□□□ -0.81
SYNE1-206ENST00000367253 RPRD2Q5VT52 1461 aaKnown RBP9.96□□□□□ -0.81
SYNE1-206ENST00000367253 DCAF15Q66K64 600 aa9.96□□□□□ -0.81
SYNE1-206ENST00000367253 EXOC6Q8TAG9 804 aa9.96□□□□□ -0.81
SYNE1-206ENST00000367253 DDX11Q96FC9 970 aa9.96□□□□□ -0.81
SYNE1-206ENST00000367253 RAB34Q9BZG1 259 aa9.96□□□□□ -0.81
SYNE1-206ENST00000367253 ANO2Q9NQ90 1003 aa9.96□□□□□ -0.81
SYNE1-206ENST00000367253 TRAPPC8Q9Y2L5 1435 aa9.96□□□□□ -0.82
SYNE1-206ENST00000367253 MYL6BP14649 208 aa9.96□□□□□ -0.82
SYNE1-206ENST00000367253 ECE1P42892 770 aa9.96□□□□□ -0.82
SYNE1-206ENST00000367253 MAP3K12Q12852 859 aa9.96□□□□□ -0.82
SYNE1-206ENST00000367253 KMT5BQ4FZB7 885 aa9.96□□□□□ -0.82
SYNE1-206ENST00000367253 LARP1Q6PKG0 1096 aaKnown RBP9.96□□□□□ -0.82
SYNE1-206ENST00000367253 LUC7LQ9NQ29 371 aaKnown RBP9.96□□□□□ -0.82
SYNE1-206ENST00000367253 CCDC69A6NI79 296 aa9.96□□□□□ -0.82
SYNE1-206ENST00000367253 ZEB2O60315 1214 aa9.96□□□□□ -0.82
SYNE1-206ENST00000367253 RRP1P56182 461 aaKnown RBP9.96□□□□□ -0.82
SYNE1-206ENST00000367253 C2orf69Q8N8R5 385 aa9.96□□□□□ -0.82
SYNE1-206ENST00000367253 WHAMMQ8TF30 809 aa9.96□□□□□ -0.82
SYNE1-206ENST00000367253 NCKAP5LQ9HCH0 1330 aa9.95□□□□□ -0.82
SYNE1-206ENST00000367253 IQCA1LA6NCM1 817 aa9.95□□□□□ -0.82
SYNE1-206ENST00000367253 EPB41L2O43491 1005 aaKnown RBP9.95□□□□□ -0.82
SYNE1-206ENST00000367253 RBBP5Q15291 538 aaKnown RBP9.95□□□□□ -0.82
SYNE1-206ENST00000367253 NBPF1Q3BBV0 1214 aa9.95□□□□□ -0.82
SYNE1-206ENST00000367253 MICALCLQ6ZW33 695 aa9.95□□□□□ -0.82
SYNE1-206ENST00000367253 ACSBG1Q96GR2 724 aa9.95□□□□□ -0.82
SYNE1-206ENST00000367253 SHTN1A0MZ66 631 aa9.95□□□□□ -0.82
SYNE1-206ENST00000367253 PLS1Q14651 629 aa9.95□□□□□ -0.82
SYNE1-206ENST00000367253 TMEM132EQ6IEE7 984 aa9.95□□□□□ -0.82
SYNE1-206ENST00000367253 C10orf67Q8IYJ2 551 aa9.95□□□□□ -0.82
SYNE1-206ENST00000367253 NLGN1Q8N2Q7 840 aa9.95□□□□□ -0.82
SYNE1-206ENST00000367253 EXOC4Q96A65 974 aa9.95□□□□□ -0.82
SYNE1-206ENST00000367253 GGNBP2Q9H3C7 697 aa9.95□□□□□ -0.82
SYNE1-206ENST00000367253 ZHX3Q9H4I2 956 aa9.95□□□□□ -0.82
SYNE1-206ENST00000367253 PEX14O75381 377 aa9.95□□□□□ -0.82
SYNE1-206ENST00000367253 RBM6P78332 1123 aaKnown RBP9.95□□□□□ -0.82
SYNE1-206ENST00000367253 CCNA1P78396 465 aa9.95□□□□□ -0.82
SYNE1-206ENST00000367253 CPLX3Q8WVH0 158 aa9.95□□□□□ -0.82
SYNE1-206ENST00000367253 EIF4E1BA6NMX2 242 aaKnown RBP9.95□□□□□ -0.82
SYNE1-206ENST00000367253 STIM1Q13586 685 aa9.95□□□□□ -0.82
SYNE1-206ENST00000367253 KRT27Q7Z3Y8 459 aa9.95□□□□□ -0.82
SYNE1-206ENST00000367253 STK24Q9Y6E0 443 aa9.95□□□□□ -0.82
SYNE1-206ENST00000367253 CNBD1Q8NA66 436 aa9.94□□□□□ -0.82
SYNE1-206ENST00000367253 DDX12PQ92771 950 aa9.94□□□□□ -0.82
SYNE1-206ENST00000367253 MRFAP1Q9Y605 127 aa9.94□□□□□ -0.82
SYNE1-206ENST00000367253 NEO1Q92859 1461 aa9.94□□□□□ -0.82
SYNE1-206ENST00000367253 ANKRD62A6NC57 917 aa9.94□□□□□ -0.82
SYNE1-206ENST00000367253 SMC2O95347 1197 aa9.94□□□□□ -0.82
SYNE1-206ENST00000367253 BAG4O95429 457 aaKnown RBP9.94□□□□□ -0.82
SYNE1-206ENST00000367253 STXBP4Q6ZWJ1 553 aa9.94□□□□□ -0.82
SYNE1-206ENST00000367253 TXLNBQ8N3L3 684 aa9.94□□□□□ -0.82
SYNE1-206ENST00000367253 CCDC102AQ96A19 550 aa9.94□□□□□ -0.82
SYNE1-206ENST00000367253 MRFAP1L1Q96HT8 127 aa9.94□□□□□ -0.82
SYNE1-206ENST00000367253 UBAP1Q9NZ09 502 aa9.94□□□□□ -0.82
SYNE1-206ENST00000367253 WASLO00401 505 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-206ENST00000367253 FILIP1LQ4L180 1135 aa9.94□□□□□ -0.82
SYNE1-206ENST00000367253 GBP6Q6ZN66 633 aa9.94□□□□□ -0.82
SYNE1-206ENST00000367253 CKAP2LQ8IYA6 745 aa9.94□□□□□ -0.82
SYNE1-206ENST00000367253 CALR3Q96L12 384 aaKnown RBP9.94□□□□□ -0.82
SYNE1-206ENST00000367253 ARHGEF5Q12774 1597 aa9.94□□□□□ -0.82
SYNE1-206ENST00000367253 ATP5J2-PTCD1G3V325 749 aa9.94□□□□□ -0.82
SYNE1-206ENST00000367253 HS1BP3Q53T59 392 aa9.94□□□□□ -0.82
SYNE1-206ENST00000367253 CCDC12Q8WUD4 166 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-206ENST00000367253 C22orf23Q9BZE7 217 aa9.94□□□□□ -0.82
SYNE1-206ENST00000367253 A2MP01023 1474 aa9.94□□□□□ -0.82
SYNE1-206ENST00000367253 HMOX1P09601 288 aa9.93□□□□□ -0.82
SYNE1-206ENST00000367253 TTC31Q49AM3 519 aaPredicted RBP9.93□□□□□ -0.82
SYNE1-206ENST00000367253 CDC37L1Q7L3B6 337 aa9.93□□□□□ -0.82
SYNE1-206ENST00000367253 SRCIN1Q9C0H9 1055 aa9.93□□□□□ -0.82
SYNE1-206ENST00000367253 ANKRD2Q9GZV1 360 aa9.93□□□□□ -0.82
SYNE1-206ENST00000367253 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.93□□□□□ -0.82
SYNE1-206ENST00000367253 A0A1B0GUA9 196 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms