RNA–Protein interactions for RNA: ENST00000360642.7

CLCN3-202, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 2 BASIC

Gene CLCN3, Length 3,208 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-202ENST00000360642 TMPOP42166 694 aaKnown RBP9.3□□□□□ -0.92
CLCN3-202ENST00000360642 RGS3P49796 1198 aa9.3□□□□□ -0.92
CLCN3-202ENST00000360642 BCAMP50895 628 aa9.3□□□□□ -0.92
CLCN3-202ENST00000360642 COPS2P61201 443 aa9.3□□□□□ -0.92
CLCN3-202ENST00000360642 FRAT1Q92837 279 aaPredicted RBP9.3□□□□□ -0.92
CLCN3-202ENST00000360642 CCDC85AQ96PX6 553 aaPredicted RBP9.3□□□□□ -0.92
CLCN3-202ENST00000360642 TLL1O43897 1013 aa9.29□□□□□ -0.92
CLCN3-202ENST00000360642 DEKP35659 375 aaKnown RBP9.29□□□□□ -0.92
CLCN3-202ENST00000360642 HINFPQ9BQA5 517 aa9.29□□□□□ -0.92
CLCN3-202ENST00000360642 KIF20BQ96Q89 1820 aa9.29□□□□□ -0.92
CLCN3-202ENST00000360642 HDGFL2Q7Z4V5 671 aaPredicted RBP9.29□□□□□ -0.92
CLCN3-202ENST00000360642 CABP1Q9NZU7 370 aa9.29□□□□□ -0.92
CLCN3-202ENST00000360642 TNNQ9UQP3 1299 aa9.29□□□□□ -0.92
CLCN3-202ENST00000360642 CDC42BPGQ6DT37 1551 aa9.29□□□□□ -0.92
CLCN3-202ENST00000360642 VIRMAQ69YN4 1812 aaKnown RBP9.28□□□□□ -0.92
CLCN3-202ENST00000360642 TSPOAP1O95153 1857 aa9.28□□□□□ -0.92
CLCN3-202ENST00000360642 MAPK1P28482 360 aa9.28□□□□□ -0.92
CLCN3-202ENST00000360642 IL16Q14005 1332 aa9.28□□□□□ -0.92
CLCN3-202ENST00000360642 RIMS2Q9UQ26 1411 aa9.28□□□□□ -0.92
CLCN3-202ENST00000360642 ATP7BP35670 1465 aa9.28□□□□□ -0.92
CLCN3-202ENST00000360642 SMARCA5O60264 1052 aaPredicted RBP9.28□□□□□ -0.92
CLCN3-202ENST00000360642 OCLNQ16625 522 aa9.28□□□□□ -0.92
CLCN3-202ENST00000360642 PMFBP1Q8TBY8 1022 aa9.28□□□□□ -0.92
CLCN3-202ENST00000360642 MAPK8IP3Q9UPT6 1336 aa9.28□□□□□ -0.92
CLCN3-202ENST00000360642 NRXN3Q9Y4C0 1643 aa9.28□□□□□ -0.92
CLCN3-202ENST00000360642 U2SURPO15042 1029 aaKnown RBP9.27□□□□□ -0.92
CLCN3-202ENST00000360642 DIAPH1O60610 1272 aaKnown RBP9.27□□□□□ -0.93
CLCN3-202ENST00000360642 GLYCTKQ8IVS8 523 aa9.27□□□□□ -0.93
CLCN3-202ENST00000360642 GTF3C2Q8WUA4 911 aaPredicted RBP9.27□□□□□ -0.93
CLCN3-202ENST00000360642 DNMT3AQ9Y6K1 912 aaPredicted RBP9.27□□□□□ -0.93
CLCN3-202ENST00000360642 ZMYM3Q14202 1370 aa9.27□□□□□ -0.93
CLCN3-202ENST00000360642 RECKO95980 971 aa9.27□□□□□ -0.93
CLCN3-202ENST00000360642 LINC01559Q495D7 138 aa9.27□□□□□ -0.93
CLCN3-202ENST00000360642 WAPLQ7Z5K2 1190 aa9.27□□□□□ -0.93
CLCN3-202ENST00000360642 CCDC24Q8N4L8 307 aa9.27□□□□□ -0.93
CLCN3-202ENST00000360642 ELOAQ14241 798 aaKnown RBP9.26□□□□□ -0.93
CLCN3-202ENST00000360642 TSR2Q969E8 191 aaKnown RBP9.26□□□□□ -0.93
CLCN3-202ENST00000360642 CPSF1Q10570 1443 aaKnown RBP9.26□□□□□ -0.93
CLCN3-202ENST00000360642 PPM1GO15355 546 aaPredicted RBP9.26□□□□□ -0.93
CLCN3-202ENST00000360642 MVPQ14764 893 aaKnown RBP9.26□□□□□ -0.93
CLCN3-202ENST00000360642 VPS9D1Q9Y2B5 631 aa9.26□□□□□ -0.93
CLCN3-202ENST00000360642 USP19O94966 1318 aa9.26□□□□□ -0.93
CLCN3-202ENST00000360642 EXOSC9Q06265 439 aaKnown RBP9.26□□□□□ -0.93
CLCN3-202ENST00000360642 ZKSCAN2Q63HK3 967 aa9.26□□□□□ -0.93
CLCN3-202ENST00000360642 PTCRAQ6ISU1 281 aaPredicted RBP9.26□□□□□ -0.93
CLCN3-202ENST00000360642 CLP1Q92989 425 aaKnown RBP9.26□□□□□ -0.93
CLCN3-202ENST00000360642 SETDB2Q96T68 719 aa9.26□□□□□ -0.93
CLCN3-202ENST00000360642 PNNQ9H307 717 aaKnown RBP9.26□□□□□ -0.93
CLCN3-202ENST00000360642 GIGYF1O75420 1035 aaPredicted RBP9.25□□□□□ -0.93
CLCN3-202ENST00000360642 CCDC102BQ68D86 513 aa9.25□□□□□ -0.93
CLCN3-202ENST00000360642 TRAF7Q6Q0C0 670 aa9.25□□□□□ -0.93
CLCN3-202ENST00000360642 DNAAF2Q9NVR5 837 aaKnown RBP9.25□□□□□ -0.93
CLCN3-202ENST00000360642 POLKQ9UBT6 870 aa9.25□□□□□ -0.93
CLCN3-202ENST00000360642 LAS1LQ9Y4W2 734 aaKnown RBP9.25□□□□□ -0.93
CLCN3-202ENST00000360642 RIPK4P57078 832 aa9.25□□□□□ -0.93
CLCN3-202ENST00000360642 PHTF2Q8N3S3 785 aa9.25□□□□□ -0.93
CLCN3-202ENST00000360642 HOXB1P14653 301 aaPredicted RBP9.24□□□□□ -0.93
CLCN3-202ENST00000360642 GTF2IP78347 998 aa9.24□□□□□ -0.93
CLCN3-202ENST00000360642 DZIP1LQ8IYY4 767 aaKnown RBP9.24□□□□□ -0.93
CLCN3-202ENST00000360642 BCL11AQ9H165 835 aa9.24□□□□□ -0.93
CLCN3-202ENST00000360642 FAM135BQ49AJ0 1406 aa9.24□□□□□ -0.93
CLCN3-202ENST00000360642 LRRC7Q96NW7 1537 aa9.24□□□□□ -0.93
CLCN3-202ENST00000360642 FKBP5Q13451 457 aaPredicted RBP9.24□□□□□ -0.93
CLCN3-202ENST00000360642 SIRT1Q96EB6 747 aa9.24□□□□□ -0.93
CLCN3-202ENST00000360642 NUDT12Q9BQG2 462 aa9.24□□□□□ -0.93
CLCN3-202ENST00000360642 ZSWIM6Q9HCJ5 1215 aa9.24□□□□□ -0.93
CLCN3-202ENST00000360642 METP08581 1390 aa9.24□□□□□ -0.93
CLCN3-202ENST00000360642 WASLO00401 505 aaPredicted RBP9.24□□□□□ -0.93
CLCN3-202ENST00000360642 ZBTB7BO15156 539 aaPredicted RBP9.24□□□□□ -0.93
CLCN3-202ENST00000360642 SSH1Q8WYL5 1049 aa9.24□□□□□ -0.93
CLCN3-202ENST00000360642 RWDD1Q9H446 243 aaPredicted RBP9.24□□□□□ -0.93
CLCN3-202ENST00000360642 KNDC1Q76NI1 1749 aa9.23□□□□□ -0.93
CLCN3-202ENST00000360642 TECPR2O15040 1411 aa9.23□□□□□ -0.93
CLCN3-202ENST00000360642 EDC4Q6P2E9 1401 aaKnown RBP9.23□□□□□ -0.93
CLCN3-202ENST00000360642 TRIM27P14373 513 aa9.23□□□□□ -0.93
CLCN3-202ENST00000360642 TBCELQ5QJ74 424 aa9.23□□□□□ -0.93
CLCN3-202ENST00000360642 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.23□□□□□ -0.93
CLCN3-202ENST00000360642 DKK1O94907 266 aa9.23□□□□□ -0.93
CLCN3-202ENST00000360642 NEFMP07197 916 aa9.23□□□□□ -0.93
CLCN3-202ENST00000360642 SLC4A3P48751 1232 aa9.23□□□□□ -0.93
CLCN3-202ENST00000360642 BRICD5Q6PL45 260 aa9.23□□□□□ -0.93
CLCN3-202ENST00000360642 PPIP5K1Q6PFW1 1433 aa9.23□□□□□ -0.93
CLCN3-202ENST00000360642 ATP5J2-PTCD1G3V325 749 aa9.22□□□□□ -0.93
CLCN3-202ENST00000360642 SCTRP47872 440 aa9.22□□□□□ -0.93
CLCN3-202ENST00000360642 AGERQ15109 404 aa9.22□□□□□ -0.93
CLCN3-202ENST00000360642 ECM1Q16610 540 aa9.22□□□□□ -0.93
CLCN3-202ENST00000360642 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.22□□□□□ -0.93
CLCN3-202ENST00000360642 SMC4Q9NTJ3 1288 aa9.22□□□□□ -0.93
CLCN3-202ENST00000360642 PDZRN3Q9UPQ7 1066 aa9.22□□□□□ -0.93
CLCN3-202ENST00000360642 MAP2P11137 1827 aaKnown RBP9.22□□□□□ -0.93
CLCN3-202ENST00000360642 AATKQ6ZMQ8 1374 aa9.22□□□□□ -0.93
CLCN3-202ENST00000360642 FBLN1P23142 703 aa9.22□□□□□ -0.93
CLCN3-202ENST00000360642 EML3Q32P44 896 aa9.22□□□□□ -0.93
CLCN3-202ENST00000360642 ATF7IPQ6VMQ6 1270 aa9.22□□□□□ -0.93
CLCN3-202ENST00000360642 PLEKHM2Q8IWE5 1019 aa9.22□□□□□ -0.93
CLCN3-202ENST00000360642 FTSJ3Q8IY81 847 aaKnown RBP9.22□□□□□ -0.93
CLCN3-202ENST00000360642 ARHGAP4P98171 946 aa9.21□□□□□ -0.93
CLCN3-202ENST00000360642 HDAC1Q13547 482 aaPredicted RBP9.21□□□□□ -0.93
CLCN3-202ENST00000360642 MLECQ14165 292 aa9.21□□□□□ -0.93
CLCN3-202ENST00000360642 FAM160A2Q8N612 972 aaPredicted RBP9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms