RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 MPRIPQ6WCQ1 1025 aa11.71□□□□□ -0.53
CLIP1-202ENST00000358808 HLA-DOAP06340 250 aa11.71□□□□□ -0.53
CLIP1-202ENST00000358808 IDEP14735 1019 aa11.71□□□□□ -0.53
CLIP1-202ENST00000358808 FBXO31Q5XUX0 539 aaPredicted RBP11.71□□□□□ -0.53
CLIP1-202ENST00000358808 CATIPQ7Z7H3 387 aa11.71□□□□□ -0.53
CLIP1-202ENST00000358808 PHACTR2O75167 634 aa11.71□□□□□ -0.54
CLIP1-202ENST00000358808 AMPD3Q01432 767 aa11.71□□□□□ -0.54
CLIP1-202ENST00000358808 SPECC1LQ69YQ0 1117 aa11.71□□□□□ -0.54
CLIP1-202ENST00000358808 MYD88Q99836 296 aa11.71□□□□□ -0.54
CLIP1-202ENST00000358808 IQCGQ9H095 443 aaKnown RBP11.71□□□□□ -0.54
CLIP1-202ENST00000358808 GOLGA8AA7E2F4 631 aa11.7□□□□□ -0.54
CLIP1-202ENST00000358808 GOLGA8BA8MQT2 603 aa11.7□□□□□ -0.54
CLIP1-202ENST00000358808 URI1O94763 535 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-202ENST00000358808 ZNF710Q8N1W2 664 aa11.7□□□□□ -0.54
CLIP1-202ENST00000358808 CCDC12Q8WUD4 166 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-202ENST00000358808 TRMT112Q9UI30 125 aaKnown RBP11.7□□□□□ -0.54
CLIP1-202ENST00000358808 ODF2LQ9ULJ1 636 aa11.7□□□□□ -0.54
CLIP1-202ENST00000358808 GUCY1B3Q02153 619 aa11.7□□□□□ -0.54
CLIP1-202ENST00000358808 WAPLQ7Z5K2 1190 aa11.7□□□□□ -0.54
CLIP1-202ENST00000358808 CCDC117Q8IWD4 279 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-202ENST00000358808 CCDC61Q9Y6R9 512 aa11.7□□□□□ -0.54
CLIP1-202ENST00000358808 TBCAO75347 108 aaKnown RBP11.7□□□□□ -0.54
CLIP1-202ENST00000358808 FBF1Q8TES7 1133 aa11.7□□□□□ -0.54
CLIP1-202ENST00000358808 C8orf76Q96K31 380 aa11.7□□□□□ -0.54
CLIP1-202ENST00000358808 GRPEL1Q9HAV7 217 aa11.7□□□□□ -0.54
CLIP1-202ENST00000358808 DPH6Q7L8W6 267 aa11.7□□□□□ -0.54
CLIP1-202ENST00000358808 CCDC83Q8IWF9 413 aa11.7□□□□□ -0.54
CLIP1-202ENST00000358808 TPD52P55327 224 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-202ENST00000358808 IFIT5Q13325 482 aaKnown RBP11.7□□□□□ -0.54
CLIP1-202ENST00000358808 RNF41Q9H4P4 317 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-202ENST00000358808 BIN2Q9UBW5 565 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-202ENST00000358808 EXOC5O00471 708 aa11.69□□□□□ -0.54
CLIP1-202ENST00000358808 TCP11L1Q9NUJ3 509 aa11.69□□□□□ -0.54
CLIP1-202ENST00000358808 PTPN14Q15678 1187 aa11.69□□□□□ -0.54
CLIP1-202ENST00000358808 FERMT3Q86UX7 667 aa11.69□□□□□ -0.54
CLIP1-202ENST00000358808 ANO10Q9NW15 660 aa11.69□□□□□ -0.54
CLIP1-202ENST00000358808 IFIT3O14879 490 aaKnown RBP11.69□□□□□ -0.54
CLIP1-202ENST00000358808 CCDC63Q8NA47 563 aa11.69□□□□□ -0.54
CLIP1-202ENST00000358808 BBXQ8WY36 941 aaPredicted RBP11.69□□□□□ -0.54
CLIP1-202ENST00000358808 DAAM2Q86T65 1068 aa11.69□□□□□ -0.54
CLIP1-202ENST00000358808 CNNM3Q8NE01 707 aa11.69□□□□□ -0.54
CLIP1-202ENST00000358808 PAIP2Q9BPZ3 127 aaKnown RBP11.69□□□□□ -0.54
CLIP1-202ENST00000358808 ZNF213O14771 459 aa11.68□□□□□ -0.54
CLIP1-202ENST00000358808 SNX16P57768 344 aa11.68□□□□□ -0.54
CLIP1-202ENST00000358808 PRPF40BQ6NWY9 871 aaKnown RBP11.68□□□□□ -0.54
CLIP1-202ENST00000358808 TBC1D5Q92609 795 aa11.68□□□□□ -0.54
CLIP1-202ENST00000358808 ANAPC4Q9UJX5 808 aa11.68□□□□□ -0.54
CLIP1-202ENST00000358808 PHF8Q9UPP1 1060 aa11.68□□□□□ -0.54
CLIP1-202ENST00000358808 KAT14Q9H8E8 782 aa11.68□□□□□ -0.54
CLIP1-202ENST00000358808 AMOTL2Q9Y2J4 779 aa11.68□□□□□ -0.54
CLIP1-202ENST00000358808 UHRF1BP1LA0JNW5 1464 aa11.68□□□□□ -0.54
CLIP1-202ENST00000358808 MAP7D1Q3KQU3 841 aa11.68□□□□□ -0.54
CLIP1-202ENST00000358808 USHBP1Q8N6Y0 703 aa11.68□□□□□ -0.54
CLIP1-202ENST00000358808 FAM114A1Q8IWE2 563 aa11.68□□□□□ -0.54
CLIP1-202ENST00000358808 DDX12PQ92771 950 aa11.68□□□□□ -0.54
CLIP1-202ENST00000358808 ATP10AO60312 1499 aa11.68□□□□□ -0.54
CLIP1-202ENST00000358808 CHD1LQ86WJ1 897 aa11.68□□□□□ -0.54
CLIP1-202ENST00000358808 NEO1Q92859 1461 aa11.67□□□□□ -0.54
CLIP1-202ENST00000358808 ESPNB1AK53 854 aa11.67□□□□□ -0.54
CLIP1-202ENST00000358808 NCBP1Q09161 790 aaKnown RBP11.67□□□□□ -0.54
CLIP1-202ENST00000358808 KIAA0753Q2KHM9 967 aa11.67□□□□□ -0.54
CLIP1-202ENST00000358808 CEP112Q8N8E3 955 aa11.67□□□□□ -0.54
CLIP1-202ENST00000358808 CFAP43Q8NDM7 1665 aa11.67□□□□□ -0.54
CLIP1-202ENST00000358808 KIF2AO00139 706 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-202ENST00000358808 FOXO3O43524 673 aa11.67□□□□□ -0.54
CLIP1-202ENST00000358808 GJC1P36383 396 aa11.67□□□□□ -0.54
CLIP1-202ENST00000358808 BOLA2Q9H3K6 86 aa11.67□□□□□ -0.54
CLIP1-202ENST00000358808 BIRC2Q13490 618 aa11.67□□□□□ -0.54
CLIP1-202ENST00000358808 AMOTQ4VCS5 1084 aa11.67□□□□□ -0.54
CLIP1-202ENST00000358808 CTR9Q6PD62 1173 aa11.67□□□□□ -0.54
CLIP1-202ENST00000358808 CFAP58Q5T655 872 aa11.67□□□□□ -0.54
CLIP1-202ENST00000358808 PDCL2Q8N4E4 241 aa11.67□□□□□ -0.54
CLIP1-202ENST00000358808 NCOA1Q15788 1441 aa11.67□□□□□ -0.54
CLIP1-202ENST00000358808 FCHSD2O94868 740 aa11.66□□□□□ -0.54
CLIP1-202ENST00000358808 WDR63Q8IWG1 891 aa11.66□□□□□ -0.54
CLIP1-202ENST00000358808 NAIPQ13075 1403 aa11.66□□□□□ -0.54
CLIP1-202ENST00000358808 CCDC160A6NGH7 325 aa11.66□□□□□ -0.54
CLIP1-202ENST00000358808 KIF5BP33176 963 aa11.66□□□□□ -0.54
CLIP1-202ENST00000358808 PLS1Q14651 629 aa11.66□□□□□ -0.54
CLIP1-202ENST00000358808 TSPY2A6NKD2 308 aa11.66□□□□□ -0.54
CLIP1-202ENST00000358808 BAG3O95817 575 aa11.66□□□□□ -0.54
CLIP1-202ENST00000358808 LDHCP07864 332 aa11.66□□□□□ -0.54
CLIP1-202ENST00000358808 ST5P78524 1137 aa11.66□□□□□ -0.54
CLIP1-202ENST00000358808 NAP1L3Q99457 506 aaPredicted RBP11.66□□□□□ -0.54
CLIP1-202ENST00000358808 NSD3Q9BZ95 1437 aa11.66□□□□□ -0.54
CLIP1-202ENST00000358808 CCDC172P0C7W6 258 aa11.66□□□□□ -0.54
CLIP1-202ENST00000358808 DDX46Q7L014 1031 aaKnown RBP11.66□□□□□ -0.54
CLIP1-202ENST00000358808 KRT28Q7Z3Y7 464 aa11.66□□□□□ -0.54
CLIP1-202ENST00000358808 CCDC155Q8N6L0 562 aa11.66□□□□□ -0.54
CLIP1-202ENST00000358808 MIS18AQ9NYP9 233 aa11.66□□□□□ -0.54
CLIP1-202ENST00000358808 TRAPPC8Q9Y2L5 1435 aa11.66□□□□□ -0.54
CLIP1-202ENST00000358808 MRVI1Q9Y6F6 885 aa11.66□□□□□ -0.54
CLIP1-202ENST00000358808 USP37Q86T82 979 aa11.66□□□□□ -0.54
CLIP1-202ENST00000358808 CCDC144CPQ8IYA2 1237 aa11.66□□□□□ -0.54
CLIP1-202ENST00000358808 SMARCC1Q92922 1105 aaPredicted RBP11.66□□□□□ -0.54
CLIP1-202ENST00000358808 FAM212AQ96EL1 285 aa11.66□□□□□ -0.54
CLIP1-202ENST00000358808 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.66□□□□□ -0.54
CLIP1-202ENST00000358808 V9GYY5 206 aaPredicted RBP11.66□□□□□ -0.54
CLIP1-202ENST00000358808 ZFYVE16Q7Z3T8 1539 aa11.65□□□□□ -0.54
CLIP1-202ENST00000358808 MCM4P33991 863 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms