RNA–Protein interactions for RNA: ENST00000358730.6

RFX3-202, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 2,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-202ENST00000358730 CCDC183Q5T5S1 534 aa10.29□□□□□ -0.76
RFX3-202ENST00000358730 ZNF790Q6PG37 636 aa10.29□□□□□ -0.76
RFX3-202ENST00000358730 RAPGEF4Q8WZA2 1011 aa10.29□□□□□ -0.76
RFX3-202ENST00000358730 FSD1Q9BTV5 496 aa10.29□□□□□ -0.76
RFX3-202ENST00000358730 TM6SF1Q9BZW5 370 aa10.29□□□□□ -0.76
RFX3-202ENST00000358730 CCDC39Q9UFE4 941 aa10.29□□□□□ -0.76
RFX3-202ENST00000358730 OFD1O75665 1012 aa10.29□□□□□ -0.76
RFX3-202ENST00000358730 UBE2HP62256 183 aa10.29□□□□□ -0.76
RFX3-202ENST00000358730 NECTIN1Q15223 517 aa10.29□□□□□ -0.76
RFX3-202ENST00000358730 CREB3L3Q68CJ9 461 aa10.29□□□□□ -0.76
RFX3-202ENST00000358730 KLHDC4Q8TBB5 520 aa10.29□□□□□ -0.76
RFX3-202ENST00000358730 ZSCAN31Q96LW9 406 aaPredicted RBP10.29□□□□□ -0.76
RFX3-202ENST00000358730 BOLA2Q9H3K6 86 aa10.29□□□□□ -0.76
RFX3-202ENST00000358730 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.29□□□□□ -0.76
RFX3-202ENST00000358730 ZKSCAN5Q9Y2L8 839 aa10.29□□□□□ -0.76
RFX3-202ENST00000358730 KDM6AO15550 1401 aaPredicted RBP10.29□□□□□ -0.76
RFX3-202ENST00000358730 LARP1Q6PKG0 1096 aaKnown RBP10.29□□□□□ -0.76
RFX3-202ENST00000358730 KCNB2Q92953 911 aa10.29□□□□□ -0.76
RFX3-202ENST00000358730 NPHP3Q7Z494 1330 aa10.29□□□□□ -0.76
RFX3-202ENST00000358730 A0A0D9SFI3 127 aa10.28□□□□□ -0.76
RFX3-202ENST00000358730 VPS37CA5D8V6 355 aaPredicted RBP10.28□□□□□ -0.76
RFX3-202ENST00000358730 NEURL1BA8MQ27 555 aa10.28□□□□□ -0.76
RFX3-202ENST00000358730 ZNF500O60304 480 aaPredicted RBP10.28□□□□□ -0.76
RFX3-202ENST00000358730 PTMAP06454 111 aaKnown RBP10.28□□□□□ -0.76
RFX3-202ENST00000358730 TPM2P07951 284 aa10.28□□□□□ -0.76
RFX3-202ENST00000358730 XAGE3Q8WTP9 111 aa10.28□□□□□ -0.76
RFX3-202ENST00000358730 SLC52A2Q9HAB3 445 aa10.28□□□□□ -0.76
RFX3-202ENST00000358730 NLRP2Q9NX02 1062 aa10.28□□□□□ -0.76
RFX3-202ENST00000358730 ME3Q16798 604 aa10.28□□□□□ -0.76
RFX3-202ENST00000358730 NECAB1Q8N987 351 aa10.28□□□□□ -0.76
RFX3-202ENST00000358730 MYD88Q99836 296 aa10.28□□□□□ -0.76
RFX3-202ENST00000358730 MTMR6Q9Y217 621 aa10.28□□□□□ -0.76
RFX3-202ENST00000358730 SLC27A2O14975 620 aa10.27□□□□□ -0.76
RFX3-202ENST00000358730 MRC1P22897 1456 aa10.27□□□□□ -0.76
RFX3-202ENST00000358730 DNM1Q05193 864 aaKnown RBP10.27□□□□□ -0.76
RFX3-202ENST00000358730 ST3GAL1Q11201 340 aa10.27□□□□□ -0.76
RFX3-202ENST00000358730 FAM184AQ8NB25 1140 aa10.27□□□□□ -0.76
RFX3-202ENST00000358730 MAP4K1Q92918 833 aa10.27□□□□□ -0.76
RFX3-202ENST00000358730 AFDNP55196 1824 aaKnown RBP10.27□□□□□ -0.77
RFX3-202ENST00000358730 ALS2Q96Q42 1657 aa10.27□□□□□ -0.77
RFX3-202ENST00000358730 C1orf167Q5SNV9 1468 aa10.27□□□□□ -0.77
RFX3-202ENST00000358730 GCKRQ14397 625 aa10.27□□□□□ -0.77
RFX3-202ENST00000358730 CSPP1Q1MSJ5 1256 aa10.27□□□□□ -0.77
RFX3-202ENST00000358730 COPS6Q7L5N1 327 aa10.27□□□□□ -0.77
RFX3-202ENST00000358730 NFATC2IPQ8NCF5 419 aa10.27□□□□□ -0.77
RFX3-202ENST00000358730 MEGF6O75095 1541 aa10.27□□□□□ -0.77
RFX3-202ENST00000358730 MED23Q9ULK4 1368 aa10.26□□□□□ -0.77
RFX3-202ENST00000358730 TATP17735 454 aaPredicted RBP10.26□□□□□ -0.77
RFX3-202ENST00000358730 PSMA5P28066 241 aa10.26□□□□□ -0.77
RFX3-202ENST00000358730 MCM5P33992 734 aa10.26□□□□□ -0.77
RFX3-202ENST00000358730 EPHA10Q5JZY3 1008 aa10.26□□□□□ -0.77
RFX3-202ENST00000358730 RNF20Q5VTR2 975 aa10.26□□□□□ -0.77
RFX3-202ENST00000358730 TPCN1Q9ULQ1 816 aa10.26□□□□□ -0.77
RFX3-202ENST00000358730 LETM1O95202 739 aaPredicted RBP10.26□□□□□ -0.77
RFX3-202ENST00000358730 PHKG2P15735 406 aa10.26□□□□□ -0.77
RFX3-202ENST00000358730 PROSER2Q86WR7 435 aaPredicted RBP10.26□□□□□ -0.77
RFX3-202ENST00000358730 ZNF496Q96IT1 587 aaPredicted RBP10.26□□□□□ -0.77
RFX3-202ENST00000358730 METTL22Q9BUU2 404 aaPredicted RBP10.26□□□□□ -0.77
RFX3-202ENST00000358730 HCLS1P14317 486 aaPredicted RBP10.26□□□□□ -0.77
RFX3-202ENST00000358730 PIP4K2AP48426 406 aaPredicted RBP10.26□□□□□ -0.77
RFX3-202ENST00000358730 COL9A3Q14050 684 aaPredicted RBP10.26□□□□□ -0.77
RFX3-202ENST00000358730 BLOC1S2Q6QNY1 142 aa10.26□□□□□ -0.77
RFX3-202ENST00000358730 TCEANC2Q96MN5 208 aa10.26□□□□□ -0.77
RFX3-202ENST00000358730 SNRKQ9NRH2 765 aa10.26□□□□□ -0.77
RFX3-202ENST00000358730 USP25Q9UHP3 1055 aa10.26□□□□□ -0.77
RFX3-202ENST00000358730 ADAMTSL3P82987 1691 aa10.25□□□□□ -0.77
RFX3-202ENST00000358730 ZNF589Q86UQ0 364 aaPredicted RBP10.25□□□□□ -0.77
RFX3-202ENST00000358730 TTC5Q8N0Z6 440 aa10.25□□□□□ -0.77
RFX3-202ENST00000358730 JARID2Q92833 1246 aaPredicted RBP10.25□□□□□ -0.77
RFX3-202ENST00000358730 CSB-PGBD3P0DP91 1061 aa10.25□□□□□ -0.77
RFX3-202ENST00000358730 EDC3Q96F86 508 aaKnown RBP10.25□□□□□ -0.77
RFX3-202ENST00000358730 R3HCC1Q9Y3T6 440 aaKnown RBP10.25□□□□□ -0.77
RFX3-202ENST00000358730 ARFGEF2Q9Y6D5 1785 aa10.25□□□□□ -0.77
RFX3-202ENST00000358730 HSP90AA2PQ14568 343 aaPredicted RBP10.24□□□□□ -0.77
RFX3-202ENST00000358730 LARP1BQ659C4 914 aaKnown RBP10.24□□□□□ -0.77
RFX3-202ENST00000358730 ANKRD13DQ6ZTN6 518 aa10.24□□□□□ -0.77
RFX3-202ENST00000358730 TAF6LQ9Y6J9 622 aa10.24□□□□□ -0.77
RFX3-202ENST00000358730 RRP9O43818 475 aaKnown RBP10.24□□□□□ -0.77
RFX3-202ENST00000358730 RPS6KB1P23443 525 aa10.24□□□□□ -0.77
RFX3-202ENST00000358730 ANKRD1Q15327 319 aa10.24□□□□□ -0.77
RFX3-202ENST00000358730 UVSSAQ2YD98 709 aa10.24□□□□□ -0.77
RFX3-202ENST00000358730 CDC37L1Q7L3B6 337 aa10.24□□□□□ -0.77
RFX3-202ENST00000358730 UBE3BQ7Z3V4 1068 aa10.24□□□□□ -0.77
RFX3-202ENST00000358730 IFNL2Q8IZJ0 200 aa10.24□□□□□ -0.77
RFX3-202ENST00000358730 DBNLQ9UJU6 430 aaKnown RBP10.24□□□□□ -0.77
RFX3-202ENST00000358730 USP16Q9Y5T5 823 aa10.24□□□□□ -0.77
RFX3-202ENST00000358730 MST1RQ04912 1400 aa10.24□□□□□ -0.77
RFX3-202ENST00000358730 SNRPA1P09661 255 aaKnown RBP10.23□□□□□ -0.77
RFX3-202ENST00000358730 GIMAP6Q6P9H5 292 aa10.23□□□□□ -0.77
RFX3-202ENST00000358730 FERMT3Q86UX7 667 aa10.23□□□□□ -0.77
RFX3-202ENST00000358730 COPRSQ9NQ92 184 aa10.23□□□□□ -0.77
RFX3-202ENST00000358730 HMG20BQ9P0W2 317 aa10.23□□□□□ -0.77
RFX3-202ENST00000358730 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.23□□□□□ -0.77
RFX3-202ENST00000358730 JCADQ9P266 1359 aa10.23□□□□□ -0.77
RFX3-202ENST00000358730 PRKCSHP14314 528 aaPredicted RBP10.23□□□□□ -0.77
RFX3-202ENST00000358730 TFCP2Q12800 502 aa10.23□□□□□ -0.77
RFX3-202ENST00000358730 TNNI3KQ59H18 835 aa10.23□□□□□ -0.77
RFX3-202ENST00000358730 DDX17Q92841 729 aaKnown RBP10.23□□□□□ -0.77
RFX3-202ENST00000358730 C19orf44Q9H6X5 657 aa10.23□□□□□ -0.77
RFX3-202ENST00000358730 FPGT-TNNI3KV9GXZ4 949 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms