RNA–Protein interactions for RNA: ENST00000354822.6

NKX2-1-201, Transcript of NK2 homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene NKX2-1, Length 2,191 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1-201ENST00000354822 VPS53Q5VIR6 699 aa26.78■■□□□ 1.88
NKX2-1-201ENST00000354822 ANP32BQ92688 251 aaKnown RBP26.78■■□□□ 1.88
NKX2-1-201ENST00000354822 SIL1Q9H173 461 aa26.78■■□□□ 1.88
NKX2-1-201ENST00000354822 PTH1RQ03431 593 aa26.77■■□□□ 1.88
NKX2-1-201ENST00000354822 CCDC171Q6TFL3 1326 aa26.77■■□□□ 1.88
NKX2-1-201ENST00000354822 CASTP20810 708 aaKnown RBP26.77■■□□□ 1.88
NKX2-1-201ENST00000354822 NECTIN1Q15223 517 aa26.77■■□□□ 1.88
NKX2-1-201ENST00000354822 EPHA10Q5JZY3 1008 aa26.77■■□□□ 1.88
NKX2-1-201ENST00000354822 NASPP49321 788 aaPredicted RBP26.76■■□□□ 1.87
NKX2-1-201ENST00000354822 ZSCAN31Q96LW9 406 aaPredicted RBP26.76■■□□□ 1.87
NKX2-1-201ENST00000354822 ZSWIM6Q9HCJ5 1215 aa26.76■■□□□ 1.87
NKX2-1-201ENST00000354822 PCDH11XQ9BZA7 1347 aa26.75■■□□□ 1.87
NKX2-1-201ENST00000354822 PCDH11YQ9BZA8 1340 aa26.75■■□□□ 1.87
NKX2-1-201ENST00000354822 FOXD4L5Q5VV16 416 aaPredicted RBP26.75■■□□□ 1.87
NKX2-1-201ENST00000354822 ZCRB1Q8TBF4 217 aaKnown RBP26.75■■□□□ 1.87
NKX2-1-201ENST00000354822 FOXD4L4Q8WXT5 416 aaPredicted RBP26.75■■□□□ 1.87
NKX2-1-201ENST00000354822 CYP46A1Q9Y6A2 500 aa26.75■■□□□ 1.87
NKX2-1-201ENST00000354822 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP26.75■■□□□ 1.87
NKX2-1-201ENST00000354822 ERVV-2B6SEH9 535 aa26.75■■□□□ 1.87
NKX2-1-201ENST00000354822 PRPF40BQ6NWY9 871 aaKnown RBP26.75■■□□□ 1.87
NKX2-1-201ENST00000354822 RUFY3Q7L099 469 aa26.75■■□□□ 1.87
NKX2-1-201ENST00000354822 MAP4K1Q92918 833 aa26.75■■□□□ 1.87
NKX2-1-201ENST00000354822 RFX5P48382 616 aaPredicted RBP26.74■■□□□ 1.87
NKX2-1-201ENST00000354822 CARD10Q9BWT7 1032 aa26.74■■□□□ 1.87
NKX2-1-201ENST00000354822 CCDC173Q0VFZ6 552 aa26.74■■□□□ 1.87
NKX2-1-201ENST00000354822 BOLA2Q9H3K6 86 aa26.74■■□□□ 1.87
NKX2-1-201ENST00000354822 RRAGDQ9NQL2 400 aaPredicted RBP26.74■■□□□ 1.87
NKX2-1-201ENST00000354822 PDRG1Q9NUG6 133 aa26.74■■□□□ 1.87
NKX2-1-201ENST00000354822 NMIQ13287 307 aaPredicted RBP26.73■■□□□ 1.87
NKX2-1-201ENST00000354822 KLHDC4Q8TBB5 520 aa26.73■■□□□ 1.87
NKX2-1-201ENST00000354822 TRIM44Q96DX7 344 aaPredicted RBP26.73■■□□□ 1.87
NKX2-1-201ENST00000354822 JAKMIP1Q96N16 626 aaKnown RBP26.73■■□□□ 1.87
NKX2-1-201ENST00000354822 SH2B1Q9NRF2 756 aaPredicted RBP26.73■■□□□ 1.87
NKX2-1-201ENST00000354822 TLR7Q9NYK1 1049 aaKnown RBP26.73■■□□□ 1.87
NKX2-1-201ENST00000354822 A0A087WZG4 1122 aa26.73■■□□□ 1.87
NKX2-1-201ENST00000354822 PTPN12Q05209 780 aaKnown RBP26.73■■□□□ 1.87
NKX2-1-201ENST00000354822 UBE3BQ7Z3V4 1068 aa26.73■■□□□ 1.87
NKX2-1-201ENST00000354822 FSD1Q9BTV5 496 aa26.73■■□□□ 1.87
NKX2-1-201ENST00000354822 PSMA5P28066 241 aa26.72■■□□□ 1.87
NKX2-1-201ENST00000354822 RBM8AQ9Y5S9 174 aaKnown RBP26.72■■□□□ 1.87
NKX2-1-201ENST00000354822 ATP5JP18859 108 aa26.71■■□□□ 1.87
NKX2-1-201ENST00000354822 KCNJ4P48050 445 aa26.71■■□□□ 1.87
NKX2-1-201ENST00000354822 RNF20Q5VTR2 975 aa26.71■■□□□ 1.87
NKX2-1-201ENST00000354822 LAMB4A4D0S4 1761 aa26.71■■□□□ 1.87
NKX2-1-201ENST00000354822 FAM227BQ96M60 508 aa26.71■■□□□ 1.87
NKX2-1-201ENST00000354822 SMC3Q9UQE7 1217 aa26.71■■□□□ 1.87
NKX2-1-201ENST00000354822 IL2RBP14784 551 aa26.7■■□□□ 1.87
NKX2-1-201ENST00000354822 PIP4K2AP48426 406 aaPredicted RBP26.7■■□□□ 1.87
NKX2-1-201ENST00000354822 NKX1-1Q15270 411 aaPredicted RBP26.7■■□□□ 1.87
NKX2-1-201ENST00000354822 CREB3L3Q68CJ9 461 aa26.7■■□□□ 1.87
NKX2-1-201ENST00000354822 PPP1R9BQ96SB3 815 aa26.7■■□□□ 1.87
NKX2-1-201ENST00000354822 TNNI3KQ59H18 835 aa26.7■■□□□ 1.86
NKX2-1-201ENST00000354822 SYAP1Q96A49 352 aaPredicted RBP26.7■■□□□ 1.86
NKX2-1-201ENST00000354822 FPGT-TNNI3KV9GXZ4 949 aa26.7■■□□□ 1.86
NKX2-1-201ENST00000354822 AFDNP55196 1824 aaKnown RBP26.69■■□□□ 1.86
NKX2-1-201ENST00000354822 ARFGEF2Q9Y6D5 1785 aa26.69■■□□□ 1.86
NKX2-1-201ENST00000354822 CASP7P55210 303 aa26.69■■□□□ 1.86
NKX2-1-201ENST00000354822 ADCK5Q3MIX3 580 aa26.68■■□□□ 1.86
NKX2-1-201ENST00000354822 ATP6V1DQ9Y5K8 247 aa26.68■■□□□ 1.86
NKX2-1-201ENST00000354822 RPAP1Q9BWH6 1393 aaPredicted RBP26.68■■□□□ 1.86
NKX2-1-201ENST00000354822 ATP5J2-PTCD1G3V325 749 aa26.68■■□□□ 1.86
NKX2-1-201ENST00000354822 PTCD1O75127 700 aaKnown RBP26.68■■□□□ 1.86
NKX2-1-201ENST00000354822 PDIA4P13667 645 aaKnown RBP26.68■■□□□ 1.86
NKX2-1-201ENST00000354822 EVA1CP58658 441 aa26.68■■□□□ 1.86
NKX2-1-201ENST00000354822 LRSAM1Q6UWE0 723 aa26.68■■□□□ 1.86
NKX2-1-201ENST00000354822 CHAMP1Q96JM3 812 aa26.68■■□□□ 1.86
NKX2-1-201ENST00000354822 TMEM63CQ9P1W3 806 aa26.68■■□□□ 1.86
NKX2-1-201ENST00000354822 GLI3P10071 1580 aa26.67■■□□□ 1.86
NKX2-1-201ENST00000354822 H7C1W4 665 aa26.67■■□□□ 1.86
NKX2-1-201ENST00000354822 ZSCAN22P10073 491 aaPredicted RBP26.67■■□□□ 1.86
NKX2-1-201ENST00000354822 RFX7Q2KHR2 1363 aa26.67■■□□□ 1.86
NKX2-1-201ENST00000354822 STX6O43752 255 aa26.67■■□□□ 1.86
NKX2-1-201ENST00000354822 CLCN1P35523 988 aa26.67■■□□□ 1.86
NKX2-1-201ENST00000354822 TFCP2Q12800 502 aa26.67■■□□□ 1.86
NKX2-1-201ENST00000354822 STRN4Q9NRL3 753 aa26.67■■□□□ 1.86
NKX2-1-201ENST00000354822 RBM27Q9P2N5 1060 aaKnown RBP26.67■■□□□ 1.86
NKX2-1-201ENST00000354822 SHANK3Q9BYB0 1731 aa26.66■■□□□ 1.86
NKX2-1-201ENST00000354822 MED23Q9ULK4 1368 aa26.66■■□□□ 1.86
NKX2-1-201ENST00000354822 TMEM87AQ8NBN3 555 aa26.66■■□□□ 1.86
NKX2-1-201ENST00000354822 HMG20BQ9P0W2 317 aa26.66■■□□□ 1.86
NKX2-1-201ENST00000354822 DBNLQ9UJU6 430 aaKnown RBP26.66■■□□□ 1.86
NKX2-1-201ENST00000354822 A0A0D9SFI3 127 aa26.65■■□□□ 1.86
NKX2-1-201ENST00000354822 NBPF26B4DH59 902 aa26.65■■□□□ 1.86
NKX2-1-201ENST00000354822 SLC27A2O14975 620 aa26.65■■□□□ 1.86
NKX2-1-201ENST00000354822 PRIM1P49642 420 aaKnown RBP26.65■■□□□ 1.86
NKX2-1-201ENST00000354822 NBPF14Q5TI25 921 aa26.65■■□□□ 1.86
NKX2-1-201ENST00000354822 NBPF10Q6P3W6 841 aaKnown RBP26.65■■□□□ 1.86
NKX2-1-201ENST00000354822 NBPF15Q8N660 670 aa26.65■■□□□ 1.86
NKX2-1-201ENST00000354822 ALDH8A1Q9H2A2 487 aaPredicted RBP26.65■■□□□ 1.86
NKX2-1-201ENST00000354822 SYT1P21579 422 aa26.65■■□□□ 1.86
NKX2-1-201ENST00000354822 ANKRD1Q15327 319 aa26.65■■□□□ 1.86
NKX2-1-201ENST00000354822 JARID2Q92833 1246 aaPredicted RBP26.65■■□□□ 1.86
NKX2-1-201ENST00000354822 CPA1P15085 419 aa26.64■■□□□ 1.86
NKX2-1-201ENST00000354822 TSGA10IPQ3SY00 556 aa26.64■■□□□ 1.86
NKX2-1-201ENST00000354822 CWC25Q9NXE8 425 aaPredicted RBP26.64■■□□□ 1.86
NKX2-1-201ENST00000354822 NSFL1CQ9UNZ2 370 aaKnown RBP26.64■■□□□ 1.85
NKX2-1-201ENST00000354822 JCADQ9P266 1359 aa26.64■■□□□ 1.85
NKX2-1-201ENST00000354822 UBR2Q8IWV8 1755 aa26.63■■□□□ 1.85
NKX2-1-201ENST00000354822 ESPNB1AK53 854 aa26.63■■□□□ 1.85
NKX2-1-201ENST00000354822 LMBR1LQ6UX01 489 aa26.63■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms