RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 TPTE2Q6XPS3 522 aa15.06■□□□□ 0
RTN3-204ENST00000354497 NIP7Q9Y221 180 aaKnown RBP eCLIP15.06■□□□□ 0
RTN3-204ENST00000354497 CNGB1Q14028 1251 aaPredicted RBP15.05■□□□□ -0
RTN3-204ENST00000354497 GAS2L2Q8NHY3 880 aa15.05■□□□□ -0
RTN3-204ENST00000354497 TRAF5O00463 557 aa15.04■□□□□ -0
RTN3-204ENST00000354497 AOC2O75106 756 aa15.04■□□□□ -0
RTN3-204ENST00000354497 ALDH1B1P30837 517 aa15.04■□□□□ -0
RTN3-204ENST00000354497 USP16Q9Y5T5 823 aa15.04■□□□□ -0
RTN3-204ENST00000354497 PRAMEF22A3QJZ6 481 aa15.03■□□□□ -0
RTN3-204ENST00000354497 AMER1Q5JTC6 1135 aaPredicted RBP15.03■□□□□ -0
RTN3-204ENST00000354497 CLEC4GQ6UXB4 293 aa15.03■□□□□ -0
RTN3-204ENST00000354497 TIMELESSQ9UNS1 1208 aa15.03■□□□□ -0
RTN3-204ENST00000354497 THSD7BQ9C0I4 1608 aa15.02■□□□□ -0
RTN3-204ENST00000354497 EPS15P42566 896 aa15.02■□□□□ -0
RTN3-204ENST00000354497 RGS19P49795 217 aa15.02■□□□□ -0
RTN3-204ENST00000354497 CC2D1BQ5T0F9 858 aaKnown RBP15.02■□□□□ -0
RTN3-204ENST00000354497 MCOLN1Q9GZU1 580 aa15.02■□□□□ -0
RTN3-204ENST00000354497 PCDH10Q9P2E7 1040 aa15.02■□□□□ -0
RTN3-204ENST00000354497 KLRG2A4D1S0 409 aaPredicted RBP15.01□□□□□ -0.01
RTN3-204ENST00000354497 TCERG1O14776 1098 aaKnown RBP15.01□□□□□ -0.01
RTN3-204ENST00000354497 LARGE2Q8N3Y3 721 aa15.01□□□□□ -0.01
RTN3-204ENST00000354497 SIPA1L3O60292 1781 aaPredicted RBP15.01□□□□□ -0.01
RTN3-204ENST00000354497 PSMD1Q99460 953 aa15□□□□□ -0.01
RTN3-204ENST00000354497 TLL2Q9Y6L7 1015 aa15□□□□□ -0.01
RTN3-204ENST00000354497 LTBP1Q14766 1721 aa15□□□□□ -0.01
RTN3-204ENST00000354497 SCNN1DP51172 638 aa15□□□□□ -0.01
RTN3-204ENST00000354497 DGKZQ13574 1117 aa15□□□□□ -0.01
RTN3-204ENST00000354497 CST9Q5W186 159 aa15□□□□□ -0.01
RTN3-204ENST00000354497 USP50Q70EL3 339 aaPredicted RBP15□□□□□ -0.01
RTN3-204ENST00000354497 RPGRQ92834 1020 aaKnown RBP15□□□□□ -0.01
RTN3-204ENST00000354497 COL4A5P29400 1685 aa14.99□□□□□ -0.01
RTN3-204ENST00000354497 CELF2O95319 508 aaKnown RBP14.99□□□□□ -0.01
RTN3-204ENST00000354497 SNRPA1P09661 255 aaKnown RBP14.99□□□□□ -0.01
RTN3-204ENST00000354497 HLFQ16534 295 aa14.99□□□□□ -0.01
RTN3-204ENST00000354497 NUTM1Q86Y26 1132 aa14.99□□□□□ -0.01
RTN3-204ENST00000354497 NIM1KQ8IY84 436 aa14.99□□□□□ -0.01
RTN3-204ENST00000354497 ZNF408Q9H9D4 720 aa14.99□□□□□ -0.01
RTN3-204ENST00000354497 MAP2K2P36507 400 aa14.98□□□□□ -0.01
RTN3-204ENST00000354497 NGEFQ8N5V2 710 aa14.98□□□□□ -0.01
RTN3-204ENST00000354497 ABCC12Q96J65 1359 aa14.98□□□□□ -0.01
RTN3-204ENST00000354497 CC2D2BQ6DHV5 1058 aa14.97□□□□□ -0.01
RTN3-204ENST00000354497 CEMIPQ8WUJ3 1361 aa14.97□□□□□ -0.01
RTN3-204ENST00000354497 NBPF26B4DH59 902 aa14.96□□□□□ -0.01
RTN3-204ENST00000354497 PPEF1O14829 653 aaPredicted RBP14.96□□□□□ -0.01
RTN3-204ENST00000354497 CA12O43570 354 aa14.96□□□□□ -0.01
RTN3-204ENST00000354497 PRKAR2BP31323 418 aa14.96□□□□□ -0.01
RTN3-204ENST00000354497 NBPF10Q6P3W6 841 aaKnown RBP14.96□□□□□ -0.01
RTN3-204ENST00000354497 SLC51AQ86UW1 340 aa14.96□□□□□ -0.01
RTN3-204ENST00000354497 NBPF15Q8N660 670 aa14.96□□□□□ -0.01
RTN3-204ENST00000354497 RTF1Q92541 710 aaKnown RBP14.96□□□□□ -0.01
RTN3-204ENST00000354497 NYXQ9GZU5 481 aa14.96□□□□□ -0.01
RTN3-204ENST00000354497 PPIP5K2O43314 1243 aa14.95□□□□□ -0.02
RTN3-204ENST00000354497 CIAPIN1Q6FI81 312 aa14.95□□□□□ -0.02
RTN3-204ENST00000354497 MCM10Q7L590 875 aa14.95□□□□□ -0.02
RTN3-204ENST00000354497 SAPCD2Q86UD0 394 aa14.95□□□□□ -0.02
RTN3-204ENST00000354497 RBM17Q96I25 401 aaKnown RBP14.95□□□□□ -0.02
RTN3-204ENST00000354497 PHACTR3Q96KR7 559 aa14.95□□□□□ -0.02
RTN3-204ENST00000354497 GLIS2Q9BZE0 524 aaPredicted RBP14.95□□□□□ -0.02
RTN3-204ENST00000354497 ADARB2Q9NS39 739 aaKnown RBP14.95□□□□□ -0.02
RTN3-204ENST00000354497 COL3A1P02461 1466 aaPredicted RBP14.95□□□□□ -0.02
RTN3-204ENST00000354497 SNED1Q8TER0 1413 aa14.95□□□□□ -0.02
RTN3-204ENST00000354497 TRPM7Q96QT4 1865 aa14.94□□□□□ -0.02
RTN3-204ENST00000354497 MKRN4PQ13434 485 aaPredicted RBP14.94□□□□□ -0.02
RTN3-204ENST00000354497 AOC3Q16853 763 aa14.94□□□□□ -0.02
RTN3-204ENST00000354497 TMX4Q9H1E5 349 aaPredicted RBP14.94□□□□□ -0.02
RTN3-204ENST00000354497 GPTP24298 496 aa14.93□□□□□ -0.02
RTN3-204ENST00000354497 BRPF1P55201 1214 aaPredicted RBP14.93□□□□□ -0.02
RTN3-204ENST00000354497 CRY2Q49AN0 593 aa14.93□□□□□ -0.02
RTN3-204ENST00000354497 GPRC5DQ9NZD1 345 aa14.93□□□□□ -0.02
RTN3-204ENST00000354497 RGL2O15211 777 aa14.92□□□□□ -0.02
RTN3-204ENST00000354497 GMPSP49915 693 aaPredicted RBP14.92□□□□□ -0.02
RTN3-204ENST00000354497 ANP32EQ9BTT0 268 aa14.92□□□□□ -0.02
RTN3-204ENST00000354497 NPC1L1Q9UHC9 1359 aa14.92□□□□□ -0.02
RTN3-204ENST00000354497 SOX10P56693 466 aa14.92□□□□□ -0.02
RTN3-204ENST00000354497 DCTN1Q14203 1278 aa14.92□□□□□ -0.02
RTN3-204ENST00000354497 GRIPAP1Q4V328 841 aa14.92□□□□□ -0.02
RTN3-204ENST00000354497 KIF6Q6ZMV9 814 aa14.92□□□□□ -0.02
RTN3-204ENST00000354497 BCL2L13Q9BXK5 485 aa14.92□□□□□ -0.02
RTN3-204ENST00000354497 KIF7Q2M1P5 1343 aa14.91□□□□□ -0.02
RTN3-204ENST00000354497 TRIM26Q12899 539 aaPredicted RBP14.91□□□□□ -0.02
RTN3-204ENST00000354497 HOXA10P31260 410 aaPredicted RBP14.9□□□□□ -0.02
RTN3-204ENST00000354497 RSPH6AQ9H0K4 717 aa14.9□□□□□ -0.02
RTN3-204ENST00000354497 ZBTB3Q9H5J0 574 aa14.9□□□□□ -0.02
RTN3-204ENST00000354497 MIS18AQ9NYP9 233 aa14.9□□□□□ -0.02
RTN3-204ENST00000354497 RRP7AQ9Y3A4 280 aaKnown RBP14.9□□□□□ -0.02
RTN3-204ENST00000354497 GTF3C3Q9Y5Q9 886 aa14.9□□□□□ -0.02
RTN3-204ENST00000354497 MYL6BP14649 208 aa14.89□□□□□ -0.03
RTN3-204ENST00000354497 CXCL9Q07325 125 aa14.89□□□□□ -0.03
RTN3-204ENST00000354497 SUSD4Q5VX71 490 aa14.89□□□□□ -0.03
RTN3-204ENST00000354497 HHIPL1Q96JK4 782 aa14.89□□□□□ -0.03
RTN3-204ENST00000354497 CFAP53Q96M91 514 aa14.89□□□□□ -0.03
RTN3-204ENST00000354497 CRAMP1Q96RY5 1269 aa14.89□□□□□ -0.03
RTN3-204ENST00000354497 ZIC5Q96T25 663 aa14.89□□□□□ -0.03
RTN3-204ENST00000354497 ZNRF3Q9ULT6 936 aa14.89□□□□□ -0.03
RTN3-204ENST00000354497 MAP3K15Q6ZN16 1313 aa14.89□□□□□ -0.03
RTN3-204ENST00000354497 CASP8AP2Q9UKL3 1982 aa14.89□□□□□ -0.03
RTN3-204ENST00000354497 RIC1Q4ADV7 1423 aa14.88□□□□□ -0.03
RTN3-204ENST00000354497 RAD17O75943 681 aa14.88□□□□□ -0.03
RTN3-204ENST00000354497 HUNKP57058 714 aa14.88□□□□□ -0.03
RTN3-204ENST00000354497 NOGQ13253 232 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 138.3 ms