RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 GCKRQ14397 625 aa10.52□□□□□ -0.73
TRIM55-204ENST00000353317 SMIM5Q71RC9 77 aa10.52□□□□□ -0.73
TRIM55-204ENST00000353317 PLBD2Q8NHP8 589 aa10.52□□□□□ -0.73
TRIM55-204ENST00000353317 QTRT2Q9H974 415 aaKnown RBP10.52□□□□□ -0.73
TRIM55-204ENST00000353317 UTYO14607 1347 aa10.51□□□□□ -0.73
TRIM55-204ENST00000353317 CLEC17AQ6ZS10 378 aa10.51□□□□□ -0.73
TRIM55-204ENST00000353317 BTAF1O14981 1849 aa10.51□□□□□ -0.73
TRIM55-204ENST00000353317 LOC102724428A0A0B4J2F2 783 aa10.51□□□□□ -0.73
TRIM55-204ENST00000353317 GRM8O00222 908 aa10.51□□□□□ -0.73
TRIM55-204ENST00000353317 PTMSP20962 102 aa10.51□□□□□ -0.73
TRIM55-204ENST00000353317 SIK1P57059 783 aa10.51□□□□□ -0.73
TRIM55-204ENST00000353317 HLFQ16534 295 aa10.51□□□□□ -0.73
TRIM55-204ENST00000353317 INTS5Q6P9B9 1019 aaKnown RBP10.51□□□□□ -0.73
TRIM55-204ENST00000353317 SSH3Q8TE77 659 aa10.51□□□□□ -0.73
TRIM55-204ENST00000353317 C9orf78Q9NZ63 289 aaPredicted RBP10.51□□□□□ -0.73
TRIM55-204ENST00000353317 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.51□□□□□ -0.73
TRIM55-204ENST00000353317 BAG4O95429 457 aaKnown RBP10.5□□□□□ -0.73
TRIM55-204ENST00000353317 CASP7P55210 303 aa10.5□□□□□ -0.73
TRIM55-204ENST00000353317 POLA2Q14181 598 aa10.5□□□□□ -0.73
TRIM55-204ENST00000353317 SEPT12Q8IYM1 358 aa10.5□□□□□ -0.73
TRIM55-204ENST00000353317 NUP98P52948 1817 aa10.5□□□□□ -0.73
TRIM55-204ENST00000353317 PALLDQ8WX93 1383 aa10.5□□□□□ -0.73
TRIM55-204ENST00000353317 ATP6V1AP38606 617 aa10.5□□□□□ -0.73
TRIM55-204ENST00000353317 TTC22Q5TAA0 569 aa10.5□□□□□ -0.73
TRIM55-204ENST00000353317 TRIM44Q96DX7 344 aaPredicted RBP10.5□□□□□ -0.73
TRIM55-204ENST00000353317 BICC1Q9H694 974 aaKnown RBP10.5□□□□□ -0.73
TRIM55-204ENST00000353317 TRPC5Q9UL62 973 aaPredicted RBP10.5□□□□□ -0.73
TRIM55-204ENST00000353317 PA2G4Q9UQ80 394 aaKnown RBP10.49□□□□□ -0.73
TRIM55-204ENST00000353317 SRGAP3O43295 1099 aa10.49□□□□□ -0.73
TRIM55-204ENST00000353317 STARD3NLO95772 234 aa10.49□□□□□ -0.73
TRIM55-204ENST00000353317 RABEP1Q15276 862 aa10.49□□□□□ -0.73
TRIM55-204ENST00000353317 KLHL40Q2TBA0 621 aa10.49□□□□□ -0.73
TRIM55-204ENST00000353317 SYNE4Q8N205 404 aa10.49□□□□□ -0.73
TRIM55-204ENST00000353317 KLHDC4Q8TBB5 520 aa10.49□□□□□ -0.73
TRIM55-204ENST00000353317 TEX13AQ9BXU3 409 aaPredicted RBP10.49□□□□□ -0.73
TRIM55-204ENST00000353317 USP26Q9BXU7 913 aa10.49□□□□□ -0.73
TRIM55-204ENST00000353317 DDX49Q9Y6V7 483 aaKnown RBP10.49□□□□□ -0.73
TRIM55-204ENST00000353317 COL5A3P25940 1745 aaPredicted RBP10.48□□□□□ -0.73
TRIM55-204ENST00000353317 GOLGA6L22H0YM25 854 aa10.48□□□□□ -0.73
TRIM55-204ENST00000353317 UBE3BQ7Z3V4 1068 aa10.48□□□□□ -0.73
TRIM55-204ENST00000353317 TBC1D2BQ9UPU7 963 aa10.48□□□□□ -0.73
TRIM55-204ENST00000353317 CRKLP46109 303 aaKnown RBP10.48□□□□□ -0.73
TRIM55-204ENST00000353317 AMIGO3Q86WK7 504 aa10.48□□□□□ -0.73
TRIM55-204ENST00000353317 A0A087WZG4 1122 aa10.47□□□□□ -0.73
TRIM55-204ENST00000353317 NEXNQ0ZGT2 675 aa10.47□□□□□ -0.73
TRIM55-204ENST00000353317 MTX1Q13505 466 aa10.47□□□□□ -0.73
TRIM55-204ENST00000353317 PKP1Q13835 747 aa10.47□□□□□ -0.73
TRIM55-204ENST00000353317 TSHZ3Q63HK5 1081 aa10.47□□□□□ -0.73
TRIM55-204ENST00000353317 LINC00116Q8NCU8 138 aa10.47□□□□□ -0.73
TRIM55-204ENST00000353317 IBTKQ9P2D0 1353 aaPredicted RBP10.47□□□□□ -0.73
TRIM55-204ENST00000353317 EIF5P55010 431 aaKnown RBP10.47□□□□□ -0.73
TRIM55-204ENST00000353317 NHSQ6T4R5 1651 aa10.47□□□□□ -0.73
TRIM55-204ENST00000353317 RREB1Q92766 1687 aa10.46□□□□□ -0.73
TRIM55-204ENST00000353317 H7C1W4 665 aa10.46□□□□□ -0.73
TRIM55-204ENST00000353317 HMMRO75330 724 aa10.46□□□□□ -0.73
TRIM55-204ENST00000353317 CYP2E1P05181 493 aaPredicted RBP10.46□□□□□ -0.73
TRIM55-204ENST00000353317 SDSP20132 328 aa10.46□□□□□ -0.73
TRIM55-204ENST00000353317 NASPP49321 788 aaPredicted RBP10.46□□□□□ -0.73
TRIM55-204ENST00000353317 ISCA1Q9BUE6 129 aa10.46□□□□□ -0.73
TRIM55-204ENST00000353317 IL1RAPL2Q9NP60 686 aa10.46□□□□□ -0.73
TRIM55-204ENST00000353317 SALL3Q9BXA9 1300 aa10.46□□□□□ -0.73
TRIM55-204ENST00000353317 SURF6O75683 361 aaKnown RBP10.46□□□□□ -0.74
TRIM55-204ENST00000353317 TCIRG1Q13488 830 aa10.46□□□□□ -0.74
TRIM55-204ENST00000353317 MCTP1Q6DN14 999 aa10.46□□□□□ -0.74
TRIM55-204ENST00000353317 CICQ96RK0 1608 aaPredicted RBP10.46□□□□□ -0.74
TRIM55-204ENST00000353317 MAP3K15Q6ZN16 1313 aa10.46□□□□□ -0.74
TRIM55-204ENST00000353317 GPTP24298 496 aa10.45□□□□□ -0.74
TRIM55-204ENST00000353317 FOXO4P98177 505 aa10.45□□□□□ -0.74
TRIM55-204ENST00000353317 PPP1R9BQ96SB3 815 aa10.45□□□□□ -0.74
TRIM55-204ENST00000353317 CCDC87Q9NVE4 849 aa10.45□□□□□ -0.74
TRIM55-204ENST00000353317 TUBGCP6Q96RT7 1819 aa10.45□□□□□ -0.74
TRIM55-204ENST00000353317 NUCB2P80303 420 aa10.45□□□□□ -0.74
TRIM55-204ENST00000353317 CCDC173Q0VFZ6 552 aa10.45□□□□□ -0.74
TRIM55-204ENST00000353317 GIGYF2Q6Y7W6 1299 aaKnown RBP10.45□□□□□ -0.74
TRIM55-204ENST00000353317 RGS17Q9UGC6 210 aaPredicted RBP10.45□□□□□ -0.74
TRIM55-204ENST00000353317 TAF1LQ8IZX4 1826 aa10.44□□□□□ -0.74
TRIM55-204ENST00000353317 IL6STP40189 918 aaPredicted RBP10.44□□□□□ -0.74
TRIM55-204ENST00000353317 RFX5P48382 616 aaPredicted RBP10.44□□□□□ -0.74
TRIM55-204ENST00000353317 ZGPATQ8N5A5 531 aaKnown RBP10.44□□□□□ -0.74
TRIM55-204ENST00000353317 FAM89AQ96GI7 184 aa10.44□□□□□ -0.74
TRIM55-204ENST00000353317 LMBRD1Q9NUN5 540 aa10.44□□□□□ -0.74
TRIM55-204ENST00000353317 AK9Q5TCS8 1911 aa10.44□□□□□ -0.74
TRIM55-204ENST00000353317 ANKRD36CQ5JPF3 1778 aa10.44□□□□□ -0.74
TRIM55-204ENST00000353317 LY75O60449 1722 aa10.44□□□□□ -0.74
TRIM55-204ENST00000353317 DZIP3Q86Y13 1208 aaKnown RBP10.44□□□□□ -0.74
TRIM55-204ENST00000353317 LRRCC1Q9C099 1032 aa10.44□□□□□ -0.74
TRIM55-204ENST00000353317 CWC25Q9NXE8 425 aaPredicted RBP10.44□□□□□ -0.74
TRIM55-204ENST00000353317 UBN2Q6ZU65 1347 aa10.44□□□□□ -0.74
TRIM55-204ENST00000353317 ZNF831Q5JPB2 1677 aa10.43□□□□□ -0.74
TRIM55-204ENST00000353317 SASH1O94885 1247 aa10.43□□□□□ -0.74
TRIM55-204ENST00000353317 ZNF445P59923 1031 aa10.43□□□□□ -0.74
TRIM55-204ENST00000353317 RABL6Q3YEC7 729 aaPredicted RBP10.43□□□□□ -0.74
TRIM55-204ENST00000353317 CAVIN1Q6NZI2 390 aaKnown RBP10.43□□□□□ -0.74
TRIM55-204ENST00000353317 CCDC191Q8NCU4 936 aa10.43□□□□□ -0.74
TRIM55-204ENST00000353317 RHPN1Q8TCX5 695 aa10.43□□□□□ -0.74
TRIM55-204ENST00000353317 LRRC4BQ9NT99 713 aa10.43□□□□□ -0.74
TRIM55-204ENST00000353317 ZSCAN23Q3MJ62 389 aa10.43□□□□□ -0.74
TRIM55-204ENST00000353317 LMBR1LQ6UX01 489 aa10.43□□□□□ -0.74
TRIM55-204ENST00000353317 NUTM1Q86Y26 1132 aa10.43□□□□□ -0.74
TRIM55-204ENST00000353317 SMARCC1Q92922 1105 aaPredicted RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms