RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 TCHHQ07283 1943 aa26.63■■□□□ 1.85
UPF3A-201ENST00000351487 VPS53Q5VIR6 699 aa26.63■■□□□ 1.85
UPF3A-201ENST00000351487 CABLES1Q8TDN4 633 aa26.63■■□□□ 1.85
UPF3A-201ENST00000351487 ZSCAN21Q9Y5A6 473 aaPredicted RBP26.63■■□□□ 1.85
UPF3A-201ENST00000351487 USP16Q9Y5T5 823 aa26.63■■□□□ 1.85
UPF3A-201ENST00000351487 EPHA10Q5JZY3 1008 aa26.62■■□□□ 1.85
UPF3A-201ENST00000351487 CCDC8Q9H0W5 538 aaPredicted RBP26.62■■□□□ 1.85
UPF3A-201ENST00000351487 ZSWIM6Q9HCJ5 1215 aa26.62■■□□□ 1.85
UPF3A-201ENST00000351487 PRIM1P49642 420 aaKnown RBP26.62■■□□□ 1.85
UPF3A-201ENST00000351487 LRSAM1Q6UWE0 723 aa26.62■■□□□ 1.85
UPF3A-201ENST00000351487 COPRSQ9NQ92 184 aa26.62■■□□□ 1.85
UPF3A-201ENST00000351487 TLR7Q9NYK1 1049 aaKnown RBP26.62■■□□□ 1.85
UPF3A-201ENST00000351487 CHRNA2Q15822 529 aa26.61■■□□□ 1.85
UPF3A-201ENST00000351487 PRPF40BQ6NWY9 871 aaKnown RBP26.61■■□□□ 1.85
UPF3A-201ENST00000351487 SIL1Q9H173 461 aa26.61■■□□□ 1.85
UPF3A-201ENST00000351487 RBSNQ9H1K0 784 aa26.61■■□□□ 1.85
UPF3A-201ENST00000351487 ERBB4Q15303 1308 aa26.61■■□□□ 1.85
UPF3A-201ENST00000351487 MAP4K1Q92918 833 aa26.6■■□□□ 1.85
UPF3A-201ENST00000351487 NMIQ13287 307 aaPredicted RBP26.59■■□□□ 1.85
UPF3A-201ENST00000351487 ADCK5Q3MIX3 580 aa26.59■■□□□ 1.85
UPF3A-201ENST00000351487 RABL6Q3YEC7 729 aaPredicted RBP26.59■■□□□ 1.85
UPF3A-201ENST00000351487 TMEM87AQ8NBN3 555 aa26.59■■□□□ 1.85
UPF3A-201ENST00000351487 JAKMIP1Q96N16 626 aaKnown RBP26.59■■□□□ 1.85
UPF3A-201ENST00000351487 UBR2Q8IWV8 1755 aa26.59■■□□□ 1.85
UPF3A-201ENST00000351487 MED23Q9ULK4 1368 aa26.59■■□□□ 1.85
UPF3A-201ENST00000351487 JCADQ9P266 1359 aa26.58■■□□□ 1.85
UPF3A-201ENST00000351487 RFX5P48382 616 aaPredicted RBP26.58■■□□□ 1.85
UPF3A-201ENST00000351487 KLHDC4Q8TBB5 520 aa26.58■■□□□ 1.85
UPF3A-201ENST00000351487 ZSCAN31Q96LW9 406 aaPredicted RBP26.58■■□□□ 1.85
UPF3A-201ENST00000351487 FAM227BQ96M60 508 aa26.58■■□□□ 1.85
UPF3A-201ENST00000351487 SH2B1Q9NRF2 756 aaPredicted RBP26.58■■□□□ 1.85
UPF3A-201ENST00000351487 PDRG1Q9NUG6 133 aa26.58■■□□□ 1.85
UPF3A-201ENST00000351487 RBM8AQ9Y5S9 174 aaKnown RBP26.58■■□□□ 1.85
UPF3A-201ENST00000351487 CYP46A1Q9Y6A2 500 aa26.58■■□□□ 1.85
UPF3A-201ENST00000351487 XIRP1Q702N8 1843 aaKnown RBP26.58■■□□□ 1.85
UPF3A-201ENST00000351487 ZKSCAN1P17029 563 aaPredicted RBP26.58■■□□□ 1.85
UPF3A-201ENST00000351487 CPA1P15085 419 aa26.57■■□□□ 1.84
UPF3A-201ENST00000351487 SYCE3A1L190 88 aa26.57■■□□□ 1.84
UPF3A-201ENST00000351487 ZSCAN22P10073 491 aaPredicted RBP26.57■■□□□ 1.84
UPF3A-201ENST00000351487 CABP4P57796 275 aa26.57■■□□□ 1.84
UPF3A-201ENST00000351487 CREB3L3Q68CJ9 461 aa26.57■■□□□ 1.84
UPF3A-201ENST00000351487 BOLA2Q9H3K6 86 aa26.57■■□□□ 1.84
UPF3A-201ENST00000351487 SYAP1Q96A49 352 aaPredicted RBP26.56■■□□□ 1.84
UPF3A-201ENST00000351487 SMC3Q9UQE7 1217 aa26.56■■□□□ 1.84
UPF3A-201ENST00000351487 STX6O43752 255 aa26.55■■□□□ 1.84
UPF3A-201ENST00000351487 LARGE1O95461 756 aa26.55■■□□□ 1.84
UPF3A-201ENST00000351487 PTPN12Q05209 780 aaKnown RBP26.55■■□□□ 1.84
UPF3A-201ENST00000351487 FSD1Q9BTV5 496 aa26.55■■□□□ 1.84
UPF3A-201ENST00000351487 NUP188Q5SRE5 1749 aa26.55■■□□□ 1.84
UPF3A-201ENST00000351487 A0A0D9SFI3 127 aa26.55■■□□□ 1.84
UPF3A-201ENST00000351487 SYT1P21579 422 aa26.55■■□□□ 1.84
UPF3A-201ENST00000351487 PLBD2Q8NHP8 589 aa26.55■■□□□ 1.84
UPF3A-201ENST00000351487 ANO8Q9HCE9 1232 aaPredicted RBP26.54■■□□□ 1.84
UPF3A-201ENST00000351487 RFX7Q2KHR2 1363 aa26.54■■□□□ 1.84
UPF3A-201ENST00000351487 PAPPAQ13219 1627 aa26.54■■□□□ 1.84
UPF3A-201ENST00000351487 PIP4K2AP48426 406 aaPredicted RBP26.53■■□□□ 1.84
UPF3A-201ENST00000351487 CASP7P55210 303 aa26.53■■□□□ 1.84
UPF3A-201ENST00000351487 UBE3BQ7Z3V4 1068 aa26.53■■□□□ 1.84
UPF3A-201ENST00000351487 USP48Q86UV5 1035 aa26.53■■□□□ 1.84
UPF3A-201ENST00000351487 PDLIM2Q96JY6 352 aa26.53■■□□□ 1.84
UPF3A-201ENST00000351487 LARP6Q9BRS8 491 aaKnown RBP26.53■■□□□ 1.84
UPF3A-201ENST00000351487 SLC27A2O14975 620 aa26.53■■□□□ 1.84
UPF3A-201ENST00000351487 ATP5JP18859 108 aa26.53■■□□□ 1.84
UPF3A-201ENST00000351487 TNNI3KQ59H18 835 aa26.53■■□□□ 1.84
UPF3A-201ENST00000351487 FPGT-TNNI3KV9GXZ4 949 aa26.53■■□□□ 1.84
UPF3A-201ENST00000351487 DBNLQ9UJU6 430 aaKnown RBP26.52■■□□□ 1.84
UPF3A-201ENST00000351487 F13A1P00488 732 aa26.51■■□□□ 1.84
UPF3A-201ENST00000351487 PSMA5P28066 241 aa26.51■■□□□ 1.84
UPF3A-201ENST00000351487 KCNJ4P48050 445 aa26.51■■□□□ 1.83
UPF3A-201ENST00000351487 RNF20Q5VTR2 975 aa26.51■■□□□ 1.83
UPF3A-201ENST00000351487 GDPD2Q9HCC8 539 aa26.51■■□□□ 1.83
UPF3A-201ENST00000351487 ATP6V1DQ9Y5K8 247 aa26.51■■□□□ 1.83
UPF3A-201ENST00000351487 TJP1Q07157 1748 aa26.51■■□□□ 1.83
UPF3A-201ENST00000351487 A0A087WZG4 1122 aa26.5■■□□□ 1.83
UPF3A-201ENST00000351487 GADD45BO75293 160 aaPredicted RBP26.5■■□□□ 1.83
UPF3A-201ENST00000351487 CCDC83Q8IWF9 413 aa26.5■■□□□ 1.83
UPF3A-201ENST00000351487 WDR17Q8IZU2 1322 aa26.5■■□□□ 1.83
UPF3A-201ENST00000351487 PCDH11XQ9BZA7 1347 aa26.5■■□□□ 1.83
UPF3A-201ENST00000351487 PCDH11YQ9BZA8 1340 aa26.5■■□□□ 1.83
UPF3A-201ENST00000351487 ST3GAL1Q11201 340 aa26.5■■□□□ 1.83
UPF3A-201ENST00000351487 HS1BP3Q53T59 392 aa26.5■■□□□ 1.83
UPF3A-201ENST00000351487 PHF14O94880 888 aa26.49■■□□□ 1.83
UPF3A-201ENST00000351487 HMG20BQ9P0W2 317 aa26.49■■□□□ 1.83
UPF3A-201ENST00000351487 ZBTB4Q9P1Z0 1013 aaPredicted RBP26.49■■□□□ 1.83
UPF3A-201ENST00000351487 GJB2P29033 226 aa26.49■■□□□ 1.83
UPF3A-201ENST00000351487 TFCP2Q12800 502 aa26.49■■□□□ 1.83
UPF3A-201ENST00000351487 TSGA10IPQ3SY00 556 aa26.49■■□□□ 1.83
UPF3A-201ENST00000351487 FOXD4L6Q3SYB3 417 aaPredicted RBP26.49■■□□□ 1.83
UPF3A-201ENST00000351487 FOXD4L3Q6VB84 417 aaPredicted RBP26.49■■□□□ 1.83
UPF3A-201ENST00000351487 ALDH8A1Q9H2A2 487 aaPredicted RBP26.49■■□□□ 1.83
UPF3A-201ENST00000351487 KCPQ6ZWJ8 1503 aa26.48■■□□□ 1.83
UPF3A-201ENST00000351487 ATP5J2-PTCD1G3V325 749 aa26.48■■□□□ 1.83
UPF3A-201ENST00000351487 PTCD1O75127 700 aaKnown RBP26.48■■□□□ 1.83
UPF3A-201ENST00000351487 ME3Q16798 604 aa26.48■■□□□ 1.83
UPF3A-201ENST00000351487 JARID2Q92833 1246 aaPredicted RBP26.48■■□□□ 1.83
UPF3A-201ENST00000351487 SHANK3Q9BYB0 1731 aa26.48■■□□□ 1.83
UPF3A-201ENST00000351487 ZNF589Q86UQ0 364 aaPredicted RBP26.47■■□□□ 1.83
UPF3A-201ENST00000351487 ZSCAN30Q86W11 494 aa26.47■■□□□ 1.83
UPF3A-201ENST00000351487 CNPY2Q9Y2B0 182 aa26.47■■□□□ 1.83
UPF3A-201ENST00000351487 NBPF26B4DH59 902 aa26.46■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 493.2 ms