RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 AOX1Q06278 1338 aa16.45■□□□□ 0.22
HMGB1-202ENST00000339872 CRKLP46109 303 aaKnown RBP16.45■□□□□ 0.22
HMGB1-202ENST00000339872 CLASRPQ8N2M8 674 aaKnown RBP16.45■□□□□ 0.22
HMGB1-202ENST00000339872 BTAF1O14981 1849 aa16.45■□□□□ 0.22
HMGB1-202ENST00000339872 ATRNO75882 1429 aa16.45■□□□□ 0.22
HMGB1-202ENST00000339872 ZNF831Q5JPB2 1677 aa16.45■□□□□ 0.22
HMGB1-202ENST00000339872 HLFQ16534 295 aa16.45■□□□□ 0.22
HMGB1-202ENST00000339872 LMBR1LQ6UX01 489 aa16.45■□□□□ 0.22
HMGB1-202ENST00000339872 DZIP3Q86Y13 1208 aaKnown RBP16.45■□□□□ 0.22
HMGB1-202ENST00000339872 CHMP3Q9Y3E7 222 aa16.45■□□□□ 0.22
HMGB1-202ENST00000339872 MYH14Q7Z406 1995 aaKnown RBP16.44■□□□□ 0.22
HMGB1-202ENST00000339872 AK9Q5TCS8 1911 aa16.44■□□□□ 0.22
HMGB1-202ENST00000339872 FOXO4P98177 505 aa16.44■□□□□ 0.22
HMGB1-202ENST00000339872 INTS5Q6P9B9 1019 aaKnown RBP16.44■□□□□ 0.22
HMGB1-202ENST00000339872 SASH1O94885 1247 aa16.44■□□□□ 0.22
HMGB1-202ENST00000339872 RFX5P48382 616 aaPredicted RBP16.44■□□□□ 0.22
HMGB1-202ENST00000339872 TRIM28Q13263 835 aaKnown RBP16.44■□□□□ 0.22
HMGB1-202ENST00000339872 FAM182BQ5T319 152 aa16.44■□□□□ 0.22
HMGB1-202ENST00000339872 CASC1Q6TDU7 716 aa16.44■□□□□ 0.22
HMGB1-202ENST00000339872 TRPC5Q9UL62 973 aaPredicted RBP16.44■□□□□ 0.22
HMGB1-202ENST00000339872 TBC1D2BQ9UPU7 963 aa16.44■□□□□ 0.22
HMGB1-202ENST00000339872 HSP90AB3PQ58FF7 597 aa16.43■□□□□ 0.22
HMGB1-202ENST00000339872 COPRSQ9NQ92 184 aa16.43■□□□□ 0.22
HMGB1-202ENST00000339872 TRIM6-TRIM34B2RNG4 842 aa16.42■□□□□ 0.22
HMGB1-202ENST00000339872 GPTP24298 496 aa16.42■□□□□ 0.22
HMGB1-202ENST00000339872 PTPN12Q05209 780 aaKnown RBP16.42■□□□□ 0.22
HMGB1-202ENST00000339872 EIF5P55010 431 aaKnown RBP16.42■□□□□ 0.22
HMGB1-202ENST00000339872 PTF1AQ7RTS3 328 aa16.42■□□□□ 0.22
HMGB1-202ENST00000339872 IFIT2P09913 472 aaKnown RBP16.41■□□□□ 0.22
HMGB1-202ENST00000339872 AACSQ86V21 672 aa16.41■□□□□ 0.22
HMGB1-202ENST00000339872 PI4K2BQ8TCG2 481 aa16.41■□□□□ 0.22
HMGB1-202ENST00000339872 RILPL2Q969X0 211 aa16.41■□□□□ 0.22
HMGB1-202ENST00000339872 DAXXQ9UER7 740 aaPredicted RBP16.41■□□□□ 0.22
HMGB1-202ENST00000339872 SBF2Q86WG5 1849 aa16.41■□□□□ 0.22
HMGB1-202ENST00000339872 ERVV-1B6SEH8 477 aa16.41■□□□□ 0.22
HMGB1-202ENST00000339872 PCCAP05165 728 aaPredicted RBP16.41■□□□□ 0.22
HMGB1-202ENST00000339872 FAM89AQ96GI7 184 aa16.41■□□□□ 0.22
HMGB1-202ENST00000339872 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.41■□□□□ 0.22
HMGB1-202ENST00000339872 NLRP10Q86W26 655 aa16.4■□□□□ 0.22
HMGB1-202ENST00000339872 ZBTB38Q8NAP3 1195 aaPredicted RBP16.4■□□□□ 0.22
HMGB1-202ENST00000339872 TTC41PQ6P2S7 1318 aa16.4■□□□□ 0.22
HMGB1-202ENST00000339872 USP42Q9H9J4 1324 aaKnown RBP16.4■□□□□ 0.22
HMGB1-202ENST00000339872 EIF5BO60841 1220 aaKnown RBP16.4■□□□□ 0.22
HMGB1-202ENST00000339872 SLC4A3P48751 1232 aa16.4■□□□□ 0.22
HMGB1-202ENST00000339872 RBM25P49756 843 aaKnown RBP16.39■□□□□ 0.21
HMGB1-202ENST00000339872 GPATCH3Q96I76 525 aa16.39■□□□□ 0.21
HMGB1-202ENST00000339872 SEPT12Q8IYM1 358 aa16.39■□□□□ 0.21
HMGB1-202ENST00000339872 EAF2Q96CJ1 260 aaPredicted RBP16.39■□□□□ 0.21
HMGB1-202ENST00000339872 MYH3P11055 1940 aa16.38■□□□□ 0.21
HMGB1-202ENST00000339872 MAP4K4O95819 1239 aaPredicted RBP16.38■□□□□ 0.21
HMGB1-202ENST00000339872 KCNQ4P56696 695 aa16.38■□□□□ 0.21
HMGB1-202ENST00000339872 LINC00116Q8NCU8 138 aa16.38■□□□□ 0.21
HMGB1-202ENST00000339872 QTRT2Q9H974 415 aaKnown RBP16.38■□□□□ 0.21
HMGB1-202ENST00000339872 ECHDC1Q9NTX5 307 aa16.38■□□□□ 0.21
HMGB1-202ENST00000339872 BCORQ6W2J9 1755 aa16.37■□□□□ 0.21
HMGB1-202ENST00000339872 ERC2O15083 957 aa16.37■□□□□ 0.21
HMGB1-202ENST00000339872 ONECUT3O60422 494 aaPredicted RBP16.37■□□□□ 0.21
HMGB1-202ENST00000339872 GLRX3O76003 335 aaKnown RBP16.37■□□□□ 0.21
HMGB1-202ENST00000339872 CCDC8Q9H0W5 538 aaPredicted RBP16.37■□□□□ 0.21
HMGB1-202ENST00000339872 UBN2Q6ZU65 1347 aa16.37■□□□□ 0.21
HMGB1-202ENST00000339872 CDHR2Q9BYE9 1310 aa16.37■□□□□ 0.21
HMGB1-202ENST00000339872 TFCP2Q12800 502 aa16.36■□□□□ 0.21
HMGB1-202ENST00000339872 SYNE4Q8N205 404 aa16.36■□□□□ 0.21
HMGB1-202ENST00000339872 PLA2G12BQ9BX93 195 aa16.36■□□□□ 0.21
HMGB1-202ENST00000339872 TLR7Q9NYK1 1049 aaKnown RBP16.36■□□□□ 0.21
HMGB1-202ENST00000339872 TRMT112Q9UI30 125 aaKnown RBP16.36■□□□□ 0.21
HMGB1-202ENST00000339872 BECN1Q14457 450 aa16.36■□□□□ 0.21
HMGB1-202ENST00000339872 ZNF34Q8IZ26 560 aa16.36■□□□□ 0.21
HMGB1-202ENST00000339872 LY75O60449 1722 aa16.36■□□□□ 0.21
HMGB1-202ENST00000339872 CAMTA2O94983 1202 aa16.35■□□□□ 0.21
HMGB1-202ENST00000339872 CNTROBQ8N137 903 aa16.35■□□□□ 0.21
HMGB1-202ENST00000339872 ZNF594Q96JF6 807 aaPredicted RBP16.35■□□□□ 0.21
HMGB1-202ENST00000339872 CHMLP26374 656 aa16.35■□□□□ 0.21
HMGB1-202ENST00000339872 CCDC57Q2TAC2 916 aa16.35■□□□□ 0.21
HMGB1-202ENST00000339872 CCDC85AQ96PX6 553 aaPredicted RBP16.35■□□□□ 0.21
HMGB1-202ENST00000339872 REC8O95072 547 aa16.34■□□□□ 0.21
HMGB1-202ENST00000339872 TNNI3KQ59H18 835 aa16.34■□□□□ 0.21
HMGB1-202ENST00000339872 FPGT-TNNI3KV9GXZ4 949 aa16.34■□□□□ 0.21
HMGB1-202ENST00000339872 BRWD3Q6RI45 1802 aa16.34■□□□□ 0.21
HMGB1-202ENST00000339872 CNTNAP4Q9C0A0 1308 aa16.34■□□□□ 0.21
HMGB1-202ENST00000339872 TAF1LQ8IZX4 1826 aa16.33■□□□□ 0.21
HMGB1-202ENST00000339872 IRS4O14654 1257 aaPredicted RBP16.33■□□□□ 0.2
HMGB1-202ENST00000339872 ATG9AQ7Z3C6 839 aa16.33■□□□□ 0.2
HMGB1-202ENST00000339872 ESYT1Q9BSJ8 1104 aa16.33■□□□□ 0.2
HMGB1-202ENST00000339872 USP26Q9BXU7 913 aa16.33■□□□□ 0.2
HMGB1-202ENST00000339872 IL15P40933 162 aaPredicted RBP16.33■□□□□ 0.2
HMGB1-202ENST00000339872 CCNL1Q9UK58 526 aaPredicted RBP16.33■□□□□ 0.2
HMGB1-202ENST00000339872 SCN7AQ01118 1682 aa16.32■□□□□ 0.2
HMGB1-202ENST00000339872 EYA2O00167 538 aa16.32■□□□□ 0.2
HMGB1-202ENST00000339872 CSF1RP07333 972 aa16.32■□□□□ 0.2
HMGB1-202ENST00000339872 CTSWP56202 376 aa16.32■□□□□ 0.2
HMGB1-202ENST00000339872 LRRC24Q50LG9 513 aa16.32■□□□□ 0.2
HMGB1-202ENST00000339872 FAM177BA6PVY3 158 aa16.31■□□□□ 0.2
HMGB1-202ENST00000339872 IFIT5Q13325 482 aaKnown RBP16.31■□□□□ 0.2
HMGB1-202ENST00000339872 TAF7LQ5H9L4 462 aa16.31■□□□□ 0.2
HMGB1-202ENST00000339872 SUSD4Q5VX71 490 aa16.31■□□□□ 0.2
HMGB1-202ENST00000339872 DBNLQ9UJU6 430 aaKnown RBP16.31■□□□□ 0.2
HMGB1-202ENST00000339872 ZNF652Q9Y2D9 606 aa16.31■□□□□ 0.2
HMGB1-202ENST00000339872 CIAO1O76071 339 aa16.31■□□□□ 0.2
HMGB1-202ENST00000339872 TTLL11Q8NHH1 800 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms