RNA–Protein interactions for RNA: ENST00000337526.10

RTN4-202, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,790 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-202ENST00000337526 CEBPAP49715 358 aaPredicted RBP15.91■□□□□ 0.14
RTN4-202ENST00000337526 NUP88Q99567 741 aaPredicted RBP15.91■□□□□ 0.14
RTN4-202ENST00000337526 LRRC2Q9BYS8 371 aa15.91■□□□□ 0.14
RTN4-202ENST00000337526 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.91■□□□□ 0.148e-8■■■■■ 43.4
RTN4-202ENST00000337526 POLR3GO15318 223 aaPredicted RBP15.9■□□□□ 0.14
RTN4-202ENST00000337526 SLC5A1P13866 664 aa15.9■□□□□ 0.14
RTN4-202ENST00000337526 GPTP24298 496 aa15.9■□□□□ 0.14
RTN4-202ENST00000337526 RBM5P52756 815 aaKnown RBP eCLIP15.9■□□□□ 0.14
RTN4-202ENST00000337526 NCOA7Q8NI08 942 aa15.9■□□□□ 0.14
RTN4-202ENST00000337526 TTC12Q9H892 705 aaPredicted RBP15.9■□□□□ 0.14
RTN4-202ENST00000337526 CWC25Q9NXE8 425 aaPredicted RBP15.9■□□□□ 0.14
RTN4-202ENST00000337526 F13A1P00488 732 aa15.9■□□□□ 0.14
RTN4-202ENST00000337526 TMEM67Q5HYA8 995 aa15.9■□□□□ 0.14
RTN4-202ENST00000337526 CCDC144CPQ8IYA2 1237 aa15.9■□□□□ 0.14
RTN4-202ENST00000337526 KLHL34Q8N239 644 aa15.9■□□□□ 0.14
RTN4-202ENST00000337526 PHACTR3Q96KR7 559 aa15.9■□□□□ 0.14
RTN4-202ENST00000337526 PAXBP1Q9Y5B6 917 aa15.9■□□□□ 0.14
RTN4-202ENST00000337526 MAP9Q49MG5 647 aa15.9■□□□□ 0.14
RTN4-202ENST00000337526 ANO6Q4KMQ2 910 aa15.9■□□□□ 0.14
RTN4-202ENST00000337526 TAF3Q5VWG9 929 aa15.9■□□□□ 0.14
RTN4-202ENST00000337526 CEP135Q66GS9 1140 aa15.9■□□□□ 0.14
RTN4-202ENST00000337526 CACNA2D4Q7Z3S7 1137 aa15.9■□□□□ 0.14
RTN4-202ENST00000337526 FBXO3Q9UK99 471 aa15.9■□□□□ 0.14
RTN4-202ENST00000337526 ZNF652Q9Y2D9 606 aa15.9■□□□□ 0.14
RTN4-202ENST00000337526 EIF4A2Q14240 407 aaKnown RBP15.89■□□□□ 0.13
RTN4-202ENST00000337526 KRT24Q2M2I5 525 aa15.89■□□□□ 0.13
RTN4-202ENST00000337526 PUS7Q96PZ0 661 aaKnown RBP15.89■□□□□ 0.13
RTN4-202ENST00000337526 SEC63Q9UGP8 760 aaKnown RBP15.89■□□□□ 0.13
RTN4-202ENST00000337526 CCDC194A0A1B0GVG4 234 aa15.89■□□□□ 0.13
RTN4-202ENST00000337526 ZNF76P36508 570 aa15.89■□□□□ 0.13
RTN4-202ENST00000337526 METAP2P50579 478 aaKnown RBP eCLIP15.89■□□□□ 0.13
RTN4-202ENST00000337526 NLRP5P59047 1200 aa15.89■□□□□ 0.13
RTN4-202ENST00000337526 ATP10BO94823 1461 aa15.89■□□□□ 0.13
RTN4-202ENST00000337526 SPDYE4A6NLX3 237 aa15.88■□□□□ 0.13
RTN4-202ENST00000337526 SNRPA1P09661 255 aaKnown RBP15.88■□□□□ 0.13
RTN4-202ENST00000337526 TMX1Q9H3N1 280 aa15.88■□□□□ 0.13
RTN4-202ENST00000337526 YEATS4O95619 227 aa15.88■□□□□ 0.13
RTN4-202ENST00000337526 CATIPQ7Z7H3 387 aa15.88■□□□□ 0.13
RTN4-202ENST00000337526 SKILP12757 684 aa15.88■□□□□ 0.13
RTN4-202ENST00000337526 TTF1Q15361 905 aaPredicted RBP15.88■□□□□ 0.13
RTN4-202ENST00000337526 ZRANB1Q9UGI0 708 aa15.88■□□□□ 0.13
RTN4-202ENST00000337526 KLF18A0A0U1RQI7 1052 aa15.88■□□□□ 0.13
RTN4-202ENST00000337526 GOLGA6L7A0A1B0GV03 622 aa15.88■□□□□ 0.13
RTN4-202ENST00000337526 GRM8O00222 908 aa15.88■□□□□ 0.13
RTN4-202ENST00000337526 ALDH1L1O75891 902 aa15.88■□□□□ 0.13
RTN4-202ENST00000337526 GOLGA6L9A6NEM1 432 aa15.87■□□□□ 0.13
RTN4-202ENST00000337526 USP8P40818 1118 aa15.87■□□□□ 0.13
RTN4-202ENST00000337526 SYKP43405 635 aa15.87■□□□□ 0.13
RTN4-202ENST00000337526 GNG11P61952 73 aa15.87■□□□□ 0.13
RTN4-202ENST00000337526 PRKCSHP14314 528 aaPredicted RBP15.87■□□□□ 0.13
RTN4-202ENST00000337526 PAFAH1B1P43034 410 aa15.87■□□□□ 0.13
RTN4-202ENST00000337526 ZNF444Q8N0Y2 327 aaPredicted RBP15.87■□□□□ 0.13
RTN4-202ENST00000337526 CCDC150Q8NCX0 1101 aa15.87■□□□□ 0.13
RTN4-202ENST00000337526 USP26Q9BXU7 913 aa15.87■□□□□ 0.13
RTN4-202ENST00000337526 NUP153P49790 1475 aaKnown RBP15.87■□□□□ 0.13
RTN4-202ENST00000337526 ZBTB7BO15156 539 aaPredicted RBP15.87■□□□□ 0.13
RTN4-202ENST00000337526 SEPT7Q16181 437 aaKnown RBP15.87■□□□□ 0.13
RTN4-202ENST00000337526 COPS6Q7L5N1 327 aa15.87■□□□□ 0.13
RTN4-202ENST00000337526 DZIP1Q86YF9 867 aaKnown RBP15.87■□□□□ 0.13
RTN4-202ENST00000337526 SLC26A6Q9BXS9 759 aa15.87■□□□□ 0.13
RTN4-202ENST00000337526 INTS4Q96HW7 963 aaKnown RBP15.86■□□□□ 0.13
RTN4-202ENST00000337526 RAB34Q9BZG1 259 aa15.86■□□□□ 0.13
RTN4-202ENST00000337526 USO1O60763 962 aaKnown RBP15.86■□□□□ 0.13
RTN4-202ENST00000337526 KSR2Q6VAB6 950 aa15.86■□□□□ 0.13
RTN4-202ENST00000337526 ANKRD24Q8TF21 1146 aa15.86■□□□□ 0.13
RTN4-202ENST00000337526 PPP1R12BO60237 982 aaPredicted RBP15.86■□□□□ 0.13
RTN4-202ENST00000337526 MCM3P25205 808 aa15.86■□□□□ 0.13
RTN4-202ENST00000337526 HS1BP3Q53T59 392 aa15.86■□□□□ 0.13
RTN4-202ENST00000337526 XAGE3Q8WTP9 111 aa15.86■□□□□ 0.13
RTN4-202ENST00000337526 DNAJC25Q9H1X3 360 aa15.86■□□□□ 0.13
RTN4-202ENST00000337526 RBM25P49756 843 aaKnown RBP15.86■□□□□ 0.13
RTN4-202ENST00000337526 AK2P54819 239 aa15.86■□□□□ 0.13
RTN4-202ENST00000337526 MTHFSDQ2M296 383 aaKnown RBP15.86■□□□□ 0.13
RTN4-202ENST00000337526 KANK3Q6NY19 840 aa15.86■□□□□ 0.13
RTN4-202ENST00000337526 MFSD6Q6ZSS7 791 aa15.86■□□□□ 0.13
RTN4-202ENST00000337526 BMS1Q14692 1282 aaKnown RBP15.85■□□□□ 0.13
RTN4-202ENST00000337526 MCMDC2Q4G0Z9 681 aa15.85■□□□□ 0.13
RTN4-202ENST00000337526 KCNG4Q8TDN1 519 aa15.85■□□□□ 0.13
RTN4-202ENST00000337526 PA2G4Q9UQ80 394 aaKnown RBP15.85■□□□□ 0.13
RTN4-202ENST00000337526 UBASH3AP57075 661 aa15.85■□□□□ 0.13
RTN4-202ENST00000337526 KRT28Q7Z3Y7 464 aa15.85■□□□□ 0.13
RTN4-202ENST00000337526 MRPS27Q92552 414 aaKnown RBP15.85■□□□□ 0.13
RTN4-202ENST00000337526 CCDC171Q6TFL3 1326 aa15.85■□□□□ 0.13
RTN4-202ENST00000337526 NPHP3Q7Z494 1330 aa15.85■□□□□ 0.13
RTN4-202ENST00000337526 UBA7P41226 1012 aa15.85■□□□□ 0.13
RTN4-202ENST00000337526 ENOX2Q16206 610 aaKnown RBP15.85■□□□□ 0.13
RTN4-202ENST00000337526 TTC21AQ8NDW8 1320 aa15.85■□□□□ 0.13
RTN4-202ENST00000337526 CHMLP26374 656 aa15.84■□□□□ 0.13
RTN4-202ENST00000337526 Q6ZUG5 572 aa15.84■□□□□ 0.13
RTN4-202ENST00000337526 ZSWIM4Q9H7M6 989 aa15.84■□□□□ 0.13
RTN4-202ENST00000337526 PLCH2O75038 1416 aa15.84■□□□□ 0.13
RTN4-202ENST00000337526 FGFR1OPO95684 399 aaKnown RBP15.84■□□□□ 0.13
RTN4-202ENST00000337526 DNA2P51530 1060 aa15.84■□□□□ 0.13
RTN4-202ENST00000337526 TDRD12Q587J7 1177 aaKnown RBP15.84■□□□□ 0.13
RTN4-202ENST00000337526 LMBR1LQ6UX01 489 aa15.84■□□□□ 0.13
RTN4-202ENST00000337526 TSG101Q99816 390 aa15.84■□□□□ 0.13
RTN4-202ENST00000337526 CALCOCO1Q9P1Z2 691 aa15.84■□□□□ 0.13
RTN4-202ENST00000337526 WDR7Q9Y4E6 1490 aa15.84■□□□□ 0.13
RTN4-202ENST00000337526 KDM2BQ8NHM5 1336 aa15.84■□□□□ 0.13
RTN4-202ENST00000337526 LUZP1Q86V48 1076 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms