RNA–Protein interactions for RNA: ENST00000331163.10

PDGFB-201, Transcript of platelet derived growth factor subunit B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFB, Length 3,497 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFB-201ENST00000331163 HSP90AB3PQ58FF7 597 aa19.32■□□□□ 0.68
PDGFB-201ENST00000331163 LARP6Q9BRS8 491 aaKnown RBP19.32■□□□□ 0.68
PDGFB-201ENST00000331163 C22orf23Q9BZE7 217 aa19.32■□□□□ 0.68
PDGFB-201ENST00000331163 ALDH1L1O75891 902 aa19.32■□□□□ 0.68
PDGFB-201ENST00000331163 FOXD4L6Q3SYB3 417 aaPredicted RBP19.32■□□□□ 0.68
PDGFB-201ENST00000331163 FOXD4L3Q6VB84 417 aaPredicted RBP19.32■□□□□ 0.68
PDGFB-201ENST00000331163 TAF5LO75529 589 aa19.31■□□□□ 0.68
PDGFB-201ENST00000331163 WASHC4Q2M389 1173 aa19.31■□□□□ 0.68
PDGFB-201ENST00000331163 CHMP4CQ96CF2 233 aa19.31■□□□□ 0.68
PDGFB-201ENST00000331163 PUS3Q9BZE2 481 aaKnown RBP19.31■□□□□ 0.68
PDGFB-201ENST00000331163 ADCY9O60503 1353 aa19.31■□□□□ 0.68
PDGFB-201ENST00000331163 SETDB2Q96T68 719 aa19.31■□□□□ 0.68
PDGFB-201ENST00000331163 EP400Q96L91 3159 aa19.31■□□□□ 0.68
PDGFB-201ENST00000331163 TOPAZ1Q8N9V7 1692 aa19.3■□□□□ 0.68
PDGFB-201ENST00000331163 SDSP20132 328 aa19.3■□□□□ 0.68
PDGFB-201ENST00000331163 DDX46Q7L014 1031 aaKnown RBP19.3■□□□□ 0.68
PDGFB-201ENST00000331163 ROBO1Q9Y6N7 1651 aa19.3■□□□□ 0.68
PDGFB-201ENST00000331163 OVOS2A0A0G2JMS6 1433 aa19.3■□□□□ 0.68
PDGFB-201ENST00000331163 TCIRG1Q13488 830 aa19.3■□□□□ 0.68
PDGFB-201ENST00000331163 LRRC24Q50LG9 513 aa19.3■□□□□ 0.68
PDGFB-201ENST00000331163 PLEKHM2Q8IWE5 1019 aa19.3■□□□□ 0.68
PDGFB-201ENST00000331163 APPP05067 770 aa19.29■□□□□ 0.68
PDGFB-201ENST00000331163 CYP19A1P11511 503 aaPredicted RBP19.29■□□□□ 0.68
PDGFB-201ENST00000331163 PDE1AP54750 535 aa19.29■□□□□ 0.68
PDGFB-201ENST00000331163 FAM43AQ8N2R8 423 aa19.29■□□□□ 0.68
PDGFB-201ENST00000331163 NWD1Q149M9 1564 aa19.29■□□□□ 0.68
PDGFB-201ENST00000331163 RGPD2P0DJD1 1756 aa19.29■□□□□ 0.68
PDGFB-201ENST00000331163 ZNF652Q9Y2D9 606 aa19.29■□□□□ 0.68
PDGFB-201ENST00000331163 CDC45O75419 566 aa19.28■□□□□ 0.68
PDGFB-201ENST00000331163 VSIG10Q8N0Z9 540 aa19.28■□□□□ 0.68
PDGFB-201ENST00000331163 TOMM22Q9NS69 142 aa19.28■□□□□ 0.68
PDGFB-201ENST00000331163 ANKRD26Q9UPS8 1709 aa19.28■□□□□ 0.68
PDGFB-201ENST00000331163 G3V3G9 751 aa19.28■□□□□ 0.68
PDGFB-201ENST00000331163 BECN1Q14457 450 aa19.28■□□□□ 0.68
PDGFB-201ENST00000331163 TRAPPC3LQ5T215 181 aa19.28■□□□□ 0.68
PDGFB-201ENST00000331163 DCAF8Q5TAQ9 597 aa19.28■□□□□ 0.68
PDGFB-201ENST00000331163 TBC1D9Q6ZT07 1266 aa19.28■□□□□ 0.68
PDGFB-201ENST00000331163 RRAGDQ9NQL2 400 aaPredicted RBP19.28■□□□□ 0.68
PDGFB-201ENST00000331163 ABCF2Q9UG63 623 aa19.27■□□□□ 0.68
PDGFB-201ENST00000331163 THRAP3Q9Y2W1 955 aaKnown RBP19.27■□□□□ 0.68
PDGFB-201ENST00000331163 TLR7Q9NYK1 1049 aaKnown RBP19.27■□□□□ 0.68
PDGFB-201ENST00000331163 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.27■□□□□ 0.67
PDGFB-201ENST00000331163 RGPD5Q99666 1765 aa19.26■□□□□ 0.67
PDGFB-201ENST00000331163 SEC31BQ9NQW1 1179 aa19.26■□□□□ 0.67
PDGFB-201ENST00000331163 SPATA31A6Q5VVP1 1343 aa19.26■□□□□ 0.67
PDGFB-201ENST00000331163 ITGA6P23229 1130 aa19.26■□□□□ 0.67
PDGFB-201ENST00000331163 CHAF1AQ13111 956 aaPredicted RBP19.26■□□□□ 0.67
PDGFB-201ENST00000331163 GOLIM4O00461 696 aa19.26■□□□□ 0.67
PDGFB-201ENST00000331163 IDH1O75874 414 aaKnown RBP19.26■□□□□ 0.67
PDGFB-201ENST00000331163 SLC4A8Q2Y0W8 1093 aa19.26■□□□□ 0.67
PDGFB-201ENST00000331163 TTC39AQ5SRH9 613 aa19.26■□□□□ 0.67
PDGFB-201ENST00000331163 UTP14AQ9BVJ6 771 aaKnown RBP19.26■□□□□ 0.67
PDGFB-201ENST00000331163 GREM2Q9H772 168 aa19.26■□□□□ 0.67
PDGFB-201ENST00000331163 ANKRD18BA2A2Z9 1011 aa19.25■□□□□ 0.67
PDGFB-201ENST00000331163 ERC2O15083 957 aa19.25■□□□□ 0.67
PDGFB-201ENST00000331163 DBNDD2Q9BQY9 259 aa19.25■□□□□ 0.67
PDGFB-201ENST00000331163 HSCBQ8IWL3 235 aa19.25■□□□□ 0.67
PDGFB-201ENST00000331163 UPF3BQ9BZI7 483 aaKnown RBP19.24■□□□□ 0.67
PDGFB-201ENST00000331163 KDM4AO75164 1064 aa19.24■□□□□ 0.67
PDGFB-201ENST00000331163 LINC00116Q8NCU8 138 aa19.24■□□□□ 0.67
PDGFB-201ENST00000331163 KIF1AQ12756 1690 aa19.24■□□□□ 0.67
PDGFB-201ENST00000331163 BRPF1P55201 1214 aaPredicted RBP19.24■□□□□ 0.67
PDGFB-201ENST00000331163 MAP3K15Q6ZN16 1313 aa19.23■□□□□ 0.67
PDGFB-201ENST00000331163 IGHMBP2P38935 993 aaKnown RBP19.23■□□□□ 0.67
PDGFB-201ENST00000331163 GIGYF2Q6Y7W6 1299 aaKnown RBP19.23■□□□□ 0.67
PDGFB-201ENST00000331163 CNTROBQ8N137 903 aa19.23■□□□□ 0.67
PDGFB-201ENST00000331163 CCDC191Q8NCU4 936 aa19.23■□□□□ 0.67
PDGFB-201ENST00000331163 ANKIB1Q9P2G1 1089 aa19.23■□□□□ 0.67
PDGFB-201ENST00000331163 SUSD4Q5VX71 490 aa19.23■□□□□ 0.67
PDGFB-201ENST00000331163 EAF2Q96CJ1 260 aaPredicted RBP19.23■□□□□ 0.67
PDGFB-201ENST00000331163 EN1Q05925 392 aaPredicted RBP19.22■□□□□ 0.67
PDGFB-201ENST00000331163 TTC22Q5TAA0 569 aa19.22■□□□□ 0.67
PDGFB-201ENST00000331163 ERC1Q8IUD2 1116 aa19.22■□□□□ 0.67
PDGFB-201ENST00000331163 SH3TC1Q8TE82 1336 aa19.22■□□□□ 0.67
PDGFB-201ENST00000331163 DEFB132Q7Z7B7 95 aa19.21■□□□□ 0.67
PDGFB-201ENST00000331163 DLG5Q8TDM6 1919 aa19.21■□□□□ 0.67
PDGFB-201ENST00000331163 PPFIA3O75145 1194 aa19.21■□□□□ 0.67
PDGFB-201ENST00000331163 GSPT1P15170 499 aaKnown RBP19.21■□□□□ 0.67
PDGFB-201ENST00000331163 NKX1-1Q15270 411 aaPredicted RBP19.21■□□□□ 0.67
PDGFB-201ENST00000331163 ZNF622Q969S3 477 aaKnown RBP eCLIP19.21■□□□□ 0.67
PDGFB-201ENST00000331163 PANK2Q9BZ23 570 aa19.21■□□□□ 0.67
PDGFB-201ENST00000331163 SLIT3O75094 1523 aa19.21■□□□□ 0.67
PDGFB-201ENST00000331163 SLFNL1Q499Z3 407 aa19.21■□□□□ 0.67
PDGFB-201ENST00000331163 ZNF772Q68DY9 489 aaPredicted RBP19.21■□□□□ 0.67
PDGFB-201ENST00000331163 NLRP10Q86W26 655 aa19.2■□□□□ 0.66
PDGFB-201ENST00000331163 ECHDC1Q9NTX5 307 aa19.2■□□□□ 0.66
PDGFB-201ENST00000331163 IFIT1P09914 478 aaKnown RBP19.2■□□□□ 0.66
PDGFB-201ENST00000331163 CCDC158Q5M9N0 1113 aa19.2■□□□□ 0.66
PDGFB-201ENST00000331163 NCAPD2Q15021 1401 aa19.2■□□□□ 0.66
PDGFB-201ENST00000331163 FNBP4Q8N3X1 1017 aaPredicted RBP19.2■□□□□ 0.66
PDGFB-201ENST00000331163 SSH3Q8TE77 659 aa19.19■□□□□ 0.66
PDGFB-201ENST00000331163 MCCP23508 829 aa19.19■□□□□ 0.66
PDGFB-201ENST00000331163 RBM6P78332 1123 aaKnown RBP19.19■□□□□ 0.66
PDGFB-201ENST00000331163 PI16Q6UXB8 463 aa19.19■□□□□ 0.66
PDGFB-201ENST00000331163 IL6STP40189 918 aaPredicted RBP19.19■□□□□ 0.66
PDGFB-201ENST00000331163 GLIPR1L2Q4G1C9 344 aa19.19■□□□□ 0.66
PDGFB-201ENST00000331163 TCEANC2Q96MN5 208 aa19.19■□□□□ 0.66
PDGFB-201ENST00000331163 TMX4Q9H1E5 349 aaPredicted RBP19.19■□□□□ 0.66
PDGFB-201ENST00000331163 ERFEQ4G0M1 354 aa19.18■□□□□ 0.66
PDGFB-201ENST00000331163 BARGINQ6ZT62 677 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms